Prupe.5G185800_v2.0.a1

HPP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0007927
Physical Location & Seq
Forward (+)
15401566 .. 15403676
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G185800.1

Sequence Viewer

Length: 891 bp
ATGACCTTTCGAGACCACCAAAAGACCATCGTATTGAAAATCTGGTTTGTCACTCCCAACGGTCAGATAGACCTCTCTCTGTCCGACACTTTCTGTTTCCTTCTTTCTAAGAGATCATCTTCATATCCATCTGAACCAATTTGGAAGAGAAAGAGAGATCAAATCAGAGAAATGGGCATGCAGCTGATGAGGAGCTCCAGCTATCATCGCCATCTTCATCCCCACGGAGCTTCTAAAACTCCAGCATTCTCTGCATCTTTGCACCCCTTTTCTTCTTCAATTGTGTTACAGATTGGTTTTGAACATGGCAGCACTAGAAGCACAGGGAGCATAAAAAGAAGAATTCAGAAGCATGGGATTGTAGCCTCAAGCAATTTGGCTGCTCCACCTTGGGAGAGCTGGAATCCTGAGAAGGGTTCTGCTTCTCCTTCTCTCAGTGACATTGTTTGGCCTTCTGCAGGTGCTTTTGCAGCAATGGCAATATTGGGAAGGGTGGATCAGATTCTAGCACCAAAAGGAGTTTCAATGACAATTGCACCTTTAGGGGCTGTTTGTGCTGTCCTCTTTGCCACTCCCTCCTCCCCAGCTGCTAGGAAATACAATATGTTCTTGGCACAAATTGGCTGTGCAGCAATTGGGGTGCTGGCATTTTCCATATTTGGGCCAGGATGGCTTGCTAGGAGCTTTGCCCTAGCTGCATCCATTGCTTTCATGACTTACACACGCTCCCCACATCCCCCTGCTGCAAGCTTACCAATACTGTTCATTGATGGAGCTAAGCTTCATCACTTGAATTTTTGGTATGCTTTGTTCCCGGGTGCCGCTGGATGCCTTCTTCTCTGCTTGATTCAAGAGATGGTGTTATACTTGCAGGAAAACTTCAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HPP

Protein Analysis

297

Amino Acids

32.39

Weight (kDa)

9.82

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 449
Acc36I ACCTGC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 818
AciI CCGC 1 cut(s) 822
AclWI GGATC 1 cut(s) 504
AcsI RAATTY 3 cut(s) 342, 793, 884
AfiI CCNNNNNNNGG 3 cut(s) 413, 458, 660
AgsI TTSAA 7 cut(s) 37, 279, 302, 525, 793, 851, 883
AjnI CCWGG 1 cut(s) 664
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 6
AlwI GGATC 1 cut(s) 504
Ama87I CYCGRG 1 cut(s) 814
AoxI GGCC 2 cut(s) 449, 662
ApeKI GCWGC 8 cut(s) 181, 309, 380, 470, 587, 629, 695, 743
ApoI RAATTY 3 cut(s) 342, 793, 884
AspS9I GGNCC 1 cut(s) 662
AsuC2I CCSGG 2 cut(s) 815, 816
AvaI CYCGRG 1 cut(s) 814
BanI GGYRCC 1 cut(s) 818
BanII GRGCYC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 8 cut(s) 193, 321, 367, 482, 574, 641, 682, 730
BccI CCATC 6 cut(s) 35, 136, 219, 663, 764, 850
BciT130I CCWGG 1 cut(s) 666
BcnI CCSGG 2 cut(s) 815, 816
BcoDI GTCTC 1 cut(s) 6
BfaI CTAG 5 cut(s) 315, 506, 591, 678, 692
BfmI CTRYAG 1 cut(s) 456
BfuAI ACCTGC 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 670
BisI GCNGC 9 cut(s) 182, 310, 381, 471, 588, 630, 696, 744, 822
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 9 cut(s) 183, 311, 382, 472, 589, 631, 697, 745, 823
Bme1390I CCNGG 3 cut(s) 666, 815, 816
BmeT110I CYCGRG 1 cut(s) 814
BmgT120I GGNCC 1 cut(s) 662
BmiI GGNNCC 1 cut(s) 820
BmrFI CCNGG 3 cut(s) 666, 815, 816
BmsI GCATC 3 cut(s) 263, 707, 818
BpmI CTGGAG 2 cut(s) 181, 225
Bpu1102I GCTNAGC 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 352
BpuMI CCSGG 2 cut(s) 815, 816
BsaI GGTCTC 1 cut(s) 6
BsaJI CCNNGG 3 cut(s) 223, 389, 814
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 3 cut(s) 413, 458, 660
Bse3DI GCAATG 2 cut(s) 480, 702
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 3 cut(s) 223, 389, 814
BseGI GGATG 5 cut(s) 217, 674, 698, 733, 833
BseLI CCNNNNNNNGG 3 cut(s) 413, 458, 660
BseMI GCAATG 2 cut(s) 480, 702
BseMII CTCAG 2 cut(s) 399, 448
BseRI GAGGAG 2 cut(s) 205, 568
BseXI GCAGC 8 cut(s) 193, 321, 367, 482, 574, 641, 682, 730
BseYI CCCAGC 1 cut(s) 583
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 2 cut(s) 451, 664
BshNI GGYRCC 1 cut(s) 818
BsiHKAI GWGCWC 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 1 cut(s) 815
BslI CCNNNNNNNGG 3 cut(s) 413, 458, 660
BsmAI GTCTC 1 cut(s) 6
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 2 cut(s) 451, 664
Bso31I GGTCTC 1 cut(s) 6
BsoBI CYCGRG 1 cut(s) 814
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 3 cut(s) 113, 157, 496
Bsp1720I GCTNAGC 1 cut(s) 777
BspACI CCGC 1 cut(s) 822
BspANI GGCC 2 cut(s) 451, 664
BspCNI CTCAG 2 cut(s) 400, 447
BspHI TCATGA 1 cut(s) 711
BspLI GGNNCC 1 cut(s) 820
BspMAI CTGCAG 1 cut(s) 460
BspMI ACCTGC 1 cut(s) 449
BspPI GGATC 1 cut(s) 504
BspT107I GGYRCC 1 cut(s) 818
BspTNI GGTCTC 1 cut(s) 6
BsrDI GCAATG 2 cut(s) 480, 702
BssECI CCNNGG 3 cut(s) 223, 389, 814
BssMI GATC 3 cut(s) 113, 157, 496
BssT1I CCWWGG 1 cut(s) 389
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 2 cut(s) 62, 762
Bst6I CTCTTC 1 cut(s) 140
BstAPI GCANNNNNTGC 2 cut(s) 251, 704
BstC8I GCNNGC 4 cut(s) 179, 645, 675, 748
BstDEI CTNAG 4 cut(s) 108, 408, 434, 777
BstDSI CCRYGG 1 cut(s) 223
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 5 cut(s) 217, 674, 698, 733, 833
BstKTI GATC 3 cut(s) 116, 160, 499
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 3 cut(s) 113, 157, 496
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 3 cut(s) 664, 813, 814
BstSFI CTRYAG 1 cut(s) 456
BstV1I GCAGC 8 cut(s) 193, 321, 367, 482, 574, 641, 682, 730
BsuRI GGCC 2 cut(s) 451, 664
BtgI CCRYGG 1 cut(s) 223
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 5 cut(s) 217, 674, 698, 733, 833
BtsIMutI CAGTG 1 cut(s) 442
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 4 cut(s) 179, 645, 675, 748
CciI TCATGA 1 cut(s) 711
Cfr13I GGNCC 1 cut(s) 662
Cfr9I CCCGGG 1 cut(s) 814
CviAII CATG 4 cut(s) 178, 305, 353, 712
DdeI CTNAG 4 cut(s) 108, 408, 434, 777
DpnI GATC 3 cut(s) 115, 159, 498
DpnII GATC 3 cut(s) 113, 157, 496
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 814
EcoICRI GAGCTC 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 389
FaeI CATG 4 cut(s) 181, 308, 356, 715
FatI CATG 4 cut(s) 177, 304, 352, 711
Fnu4HI GCNGC 9 cut(s) 182, 310, 381, 471, 588, 630, 696, 744, 822
FokI GGATG 5 cut(s) 204, 681, 685, 720, 840
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 9 cut(s) 182, 310, 381, 471, 588, 630, 696, 744, 822
FspBI CTAG 5 cut(s) 315, 506, 591, 678, 692
GluI GCNGC 9 cut(s) 182, 310, 381, 471, 588, 630, 696, 744, 822
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 2 cut(s) 181, 225
HaeIII GGCC 2 cut(s) 451, 664
HapII CCGG 1 cut(s) 815
Hin1II CATG 4 cut(s) 181, 308, 356, 715
HindIII AAGCTT 2 cut(s) 748, 779
HinfI GANTC 3 cut(s) 403, 502, 847
HpaII CCGG 1 cut(s) 815
Hpy188I TCNGA 6 cut(s) 66, 85, 133, 167, 348, 501
Hpy188III TCNNGA 4 cut(s) 11, 407, 712, 851
HpyAV CCTTC 6 cut(s) 110, 406, 438, 462, 483, 842
HpyCH4III ACNGT 2 cut(s) 62, 762
HpyF3I CTNAG 4 cut(s) 108, 408, 434, 777
Hsp92II CATG 4 cut(s) 181, 308, 356, 715
Kzo9I GATC 3 cut(s) 113, 157, 496
LmnI GCTCC 8 cut(s) 192, 200, 227, 327, 388, 681, 731, 773
Lsp1109I GCAGC 8 cut(s) 193, 321, 367, 482, 574, 641, 682, 730
LweI GCATC 3 cut(s) 263, 707, 818
MaeI CTAG 5 cut(s) 315, 506, 591, 678, 692
MaeIII GTNAC 3 cut(s) 49, 285, 437
MalI GATC 3 cut(s) 115, 159, 498
MboI GATC 3 cut(s) 113, 157, 496
MboII GAAGA 7 cut(s) 111, 157, 206, 264, 267, 351, 827
MfeI CAATTG 3 cut(s) 279, 531, 633
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 9 cut(s) 138, 279, 342, 373, 531, 618, 633, 793, 884
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 6 cut(s) 83, 183, 376, 572, 586, 589
MspA1I CMGCKG 3 cut(s) 184, 587, 824
MspI CCGG 1 cut(s) 815
MspR9I CCNGG 3 cut(s) 666, 815, 816
MunI CAATTG 3 cut(s) 279, 531, 633
Mva1269I GAATGC 1 cut(s) 245
MvaI CCWGG 1 cut(s) 666
NciI CCSGG 2 cut(s) 815, 816
NdeII GATC 3 cut(s) 113, 157, 496
NlaIII CATG 4 cut(s) 181, 308, 356, 715
NlaIV GGNNCC 1 cut(s) 820
NmuCI GTSAC 2 cut(s) 49, 437
NspI RCATGY 1 cut(s) 181
PaeI GCATGC 1 cut(s) 181
PagI TCATGA 1 cut(s) 711
PaqCI CACCTGC 1 cut(s) 449
PctI GAATGC 1 cut(s) 245
PfeI GAWTC 3 cut(s) 403, 502, 847
PkrI GCNGC 9 cut(s) 183, 311, 382, 472, 589, 631, 697, 745, 823
Psp124BI GAGCTC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 664
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 1 cut(s) 820
PspPI GGNCC 1 cut(s) 662
PsrI GAACNNNNNNTAC 2 cut(s) 794, 826
PstI CTGCAG 1 cut(s) 460
PvuII CAGCTG 2 cut(s) 184, 587
SacI GAGCTC 1 cut(s) 197
SatI GCNGC 9 cut(s) 182, 310, 381, 471, 588, 630, 696, 744, 822
Sau3AI GATC 3 cut(s) 113, 157, 496
Sau96I GGNCC 1 cut(s) 662
ScrFI CCNGG 3 cut(s) 666, 815, 816
SduI GDGCHC 1 cut(s) 197
SfaNI GCATC 3 cut(s) 263, 707, 818
SfcI CTRYAG 1 cut(s) 456
SmaI CCCGGG 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
SphI GCATGC 1 cut(s) 181
Sse9I AATT 9 cut(s) 138, 279, 342, 373, 531, 618, 633, 793, 884
SsiI CCGC 1 cut(s) 822
SspI AATATT 1 cut(s) 483
SspMI CTAG 5 cut(s) 315, 506, 591, 678, 692
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 3 cut(s) 664, 813, 814
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 2 cut(s) 62, 762
TaqI TCGA 1 cut(s) 10
TasI AATT 9 cut(s) 138, 279, 342, 373, 531, 618, 633, 793, 884
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 3 cut(s) 403, 502, 847
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 2 cut(s) 49, 437
TseI GCWGC 8 cut(s) 181, 309, 380, 470, 587, 629, 695, 743
Tsp45I GTSAC 2 cut(s) 49, 437
TspDTI ATGAA 5 cut(s) 111, 206, 700, 754, 773
TspGWI ACGGA 1 cut(s) 240
TspMI CCCGGG 1 cut(s) 814
TspRI CASTG 1 cut(s) 442
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 3 cut(s) 342, 793, 884
XceI RCATGY 1 cut(s) 181
XmaI CCCGGG 1 cut(s) 814
XspI CTAG 5 cut(s) 315, 506, 591, 678, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.