Rh7CG036600

HPP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007927
Physical Location & Seq
Forward (+)
2492147 .. 2493965
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG036600.1

Sequence Viewer

Length: 720 bp
ATGGGCATGCAAATGAGGATTATTAGCTTCCACCACCATCTCCTTCATCACAATGCTTCTTCTGCAACTCCGGCATTCTCAATGTCTTTACACCCTTTTTCTTCTTCTTCTTCAATTTTATTCCGATTTCACAAGAACCTCGCCGGCCGAAGCGTAATCAGAACGACGAAAGGAAGAAGTAGTTATCATAACTATGGGATTGTGGCCTCAAGCAACGTGGGTGCGCCGGTTTGGGAGGCTTGGAAACCTGACAAGGCTTCTTCTGCTCCTTCCCTCAGCGATGTTCTTTGGCCTTCTGCAGCAATGGCGATATTGGGAAGAATAGATGAGATGCTAACACCGAAAGGAGTTTCAATGACAATTGCACCTTTAGGAGCTGTTTGTGCTGTCCTCTTTGCTACTCCCACCTCTCCAGGTGCTCGGAAGTACAACATGTTCATGGCACAAATTGGTTGTGCAGCCATTGGTGTCCTAGCATTTTCTGTATTAGGGCCAGGGTGGCTTGCCCGGAGCTTTGCCCTCGCTGCTTCCATTGCCTTCATGATCTTCACACGCTCCACTCATCCGCCAGCTGCGAGCTTGCCAATACTCTTCATTGACGGAGCAAAGTTGCATAACCTGAATTATTGGTATGCTTTCTTCCCCGGCGCTGCCGGATGCATCCTTCTTTGCTTGATTCAAGTGATGGTGTTACACTTGAAGGACAACTTCAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HPP

Protein Analysis

239

Amino Acids

25.8

Weight (kDa)

9.92

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TM_HPP PF04982 99 - 233 8.3e-29 HPP, transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 566
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 713
AfaI GTAC 1 cut(s) 428
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 5 cut(s) 114, 354, 680, 700, 712
AjnI CCWGG 2 cut(s) 412, 493
AluBI AGCT 5 cut(s) 27, 377, 513, 572, 579
AluI AGCT 5 cut(s) 27, 377, 513, 572, 579
Alw21I GWGCWC 1 cut(s) 421
AoxI GGCC 4 cut(s) 145, 204, 290, 491
ApeKI GCWGC 5 cut(s) 299, 458, 524, 572, 650
ApoI RAATTY 1 cut(s) 713
AspLEI GCGC 2 cut(s) 226, 650
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 2 cut(s) 508, 645
BarI GAAGNNNNNNTAC 2 cut(s) 623, 655
Bbv12I GWGCWC 1 cut(s) 421
BbvCI CCTCAGC 1 cut(s) 275
BbvI GCAGC 5 cut(s) 311, 470, 511, 559, 637
BccI CCATC 2 cut(s) 45, 679
BciT130I CCWGG 2 cut(s) 414, 495
BcnI CCSGG 2 cut(s) 508, 645
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 297
BfoI RGCGCY 1 cut(s) 651
BglI GCCNNNNNGGC 1 cut(s) 499
BisI GCNGC 5 cut(s) 300, 459, 525, 573, 651
BlsI GCNGC 5 cut(s) 301, 460, 526, 574, 652
Bme1390I CCNGG 4 cut(s) 414, 495, 508, 645
BmgT120I GGNCC 1 cut(s) 491
BmrFI CCNGG 4 cut(s) 414, 495, 508, 645
BmsI GCATC 3 cut(s) 321, 647, 669
BpmI CTGGAG 1 cut(s) 396
Bpu10I CCTNAGC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 193
BpuMI CCSGG 2 cut(s) 508, 645
BsaJI CCNNGG 2 cut(s) 494, 643
Bse118I RCCGGY 2 cut(s) 143, 226
Bse3DI GCAATG 2 cut(s) 309, 531
BseBI CCWGG 2 cut(s) 414, 495
BseDI CCNNGG 2 cut(s) 494, 643
BseGI GGATG 3 cut(s) 562, 660, 662
BseMI GCAATG 2 cut(s) 309, 531
BseMII CTCAG 1 cut(s) 289
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 5 cut(s) 311, 470, 511, 559, 637
BsgI GTGCAG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 4 cut(s) 147, 206, 292, 493
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 6 cut(s) 71, 144, 227, 508, 645, 654
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 4 cut(s) 147, 206, 292, 493
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 1 cut(s) 543
BspACI CCGC 1 cut(s) 566
BspANI GGCC 4 cut(s) 147, 206, 292, 493
BspCNI CTCAG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 540
BspMAI CTGCAG 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 309, 531
BsrFI RCCGGY 2 cut(s) 143, 226
BssAI RCCGGY 2 cut(s) 143, 226
BssECI CCNNGG 2 cut(s) 494, 643
BssMI GATC 1 cut(s) 543
Bst2UI CCWGG 2 cut(s) 414, 495
Bst6I CTCTTC 1 cut(s) 596
BstC8I GCNNGC 6 cut(s) 8, 145, 504, 570, 577, 581
BstDEI CTNAG 1 cut(s) 275
BstF5I GGATG 3 cut(s) 562, 660, 662
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 2 cut(s) 226, 650
BstKTI GATC 1 cut(s) 546
BstMBI GATC 1 cut(s) 543
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 8 cut(s) 62, 71, 263, 305, 383, 499, 524, 533
BstNI CCWGG 2 cut(s) 414, 495
BstNSI RCATGY 2 cut(s) 10, 436
BstSCI CCNGG 4 cut(s) 412, 493, 506, 643
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 5 cut(s) 311, 470, 511, 559, 637
BstZI CGGCCG 1 cut(s) 145
BsuRI GGCC 4 cut(s) 147, 206, 292, 493
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 562, 660, 662
Cac8I GCNNGC 6 cut(s) 8, 145, 504, 570, 577, 581
CciI TCATGA 1 cut(s) 540
CfoI GCGC 2 cut(s) 226, 650
Cfr10I RCCGGY 2 cut(s) 143, 226
Cfr13I GGNCC 1 cut(s) 491
Csp6I GTAC 1 cut(s) 427
CspCI CAANNNNNGTGG 2 cut(s) 198, 233
CviAII CATG 4 cut(s) 7, 433, 439, 541
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 1 cut(s) 275
DpnI GATC 1 cut(s) 545
DpnII GATC 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 145
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
EciI GGCGGA 1 cut(s) 555
EclXI CGGCCG 1 cut(s) 145
Eco52I CGGCCG 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 412, 493
EcoT22I ATGCAT 1 cut(s) 662
FaeI CATG 4 cut(s) 10, 436, 442, 544
FaiI YATR 8 cut(s) 8, 189, 195, 434, 440, 542, 615, 633
FalI AAGNNNNNCTT 1 cut(s) 692
FatI CATG 4 cut(s) 6, 432, 438, 540
Fnu4HI GCNGC 5 cut(s) 300, 459, 525, 573, 651
FokI GGATG 3 cut(s) 549, 647, 669
Fsp4HI GCNGC 5 cut(s) 300, 459, 525, 573, 651
FspBI CTAG 1 cut(s) 473
GlaI GCGC 2 cut(s) 225, 649
GluI GCNGC 5 cut(s) 300, 459, 525, 573, 651
GsuI CTGGAG 1 cut(s) 396
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 4 cut(s) 147, 206, 292, 493
HapII CCGG 6 cut(s) 71, 144, 227, 508, 645, 654
HhaI GCGC 2 cut(s) 226, 650
Hin1II CATG 4 cut(s) 10, 436, 442, 544
Hin6I GCGC 2 cut(s) 224, 648
HinP1I GCGC 2 cut(s) 224, 648
HinfI GANTC 1 cut(s) 676
HpaII CCGG 6 cut(s) 71, 144, 227, 508, 645, 654
Hpy188I TCNGA 4 cut(s) 125, 161, 423, 719
Hpy188III TCNNGA 1 cut(s) 541
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 6 cut(s) 53, 279, 303, 547, 674, 694
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 7 cut(s) 10, 65, 299, 365, 458, 613, 660
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 71, 263, 305, 383, 499, 524, 533
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 4 cut(s) 10, 436, 442, 544
HspAI GCGC 2 cut(s) 224, 648
KroI GCCGGC 1 cut(s) 143
KroNI GCCGGC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 543
LmnI GCTCC 5 cut(s) 271, 374, 510, 560, 602
Lsp1109I GCAGC 5 cut(s) 311, 470, 511, 559, 637
LweI GCATC 3 cut(s) 321, 647, 669
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 690
MalI GATC 1 cut(s) 545
MboI GATC 1 cut(s) 543
MfeI CAATTG 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 5 cut(s) 114, 360, 447, 622, 713
MnlI CCTC 8 cut(s) 9, 149, 217, 229, 284, 401, 418, 530
Mph1103I ATGCAT 1 cut(s) 662
MroNI GCCGGC 1 cut(s) 143
MslI CAYNNNNRTG 4 cut(s) 11, 51, 192, 437
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 6 cut(s) 71, 144, 227, 508, 645, 654
MspR9I CCNGG 4 cut(s) 414, 495, 508, 645
MunI CAATTG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 2 cut(s) 414, 495
MwoI GCNNNNNNNGC 8 cut(s) 62, 71, 263, 305, 383, 499, 524, 533
NaeI GCCGGC 1 cut(s) 145
NciI CCSGG 2 cut(s) 508, 645
NdeII GATC 1 cut(s) 543
NgoMIV GCCGGC 1 cut(s) 143
NlaIII CATG 4 cut(s) 10, 436, 442, 544
NsiI ATGCAT 1 cut(s) 662
NspI RCATGY 2 cut(s) 10, 436
PaeI GCATGC 1 cut(s) 10
PagI TCATGA 1 cut(s) 540
PciI ACATGT 1 cut(s) 432
PctI GAATGC 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 676
PkrI GCNGC 5 cut(s) 301, 460, 526, 574, 652
PscI ACATGT 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 412, 493
PspGI CCWGG 2 cut(s) 412, 493
PspPI GGNCC 1 cut(s) 491
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
PstI CTGCAG 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 4 cut(s) 11, 51, 192, 437
SatI GCNGC 5 cut(s) 300, 459, 525, 573, 651
Sau3AI GATC 1 cut(s) 543
Sau96I GGNCC 1 cut(s) 491
ScrFI CCNGG 4 cut(s) 414, 495, 508, 645
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 3 cut(s) 321, 647, 669
SfcI CTRYAG 1 cut(s) 297
SmiMI CAYNNNNRTG 4 cut(s) 11, 51, 192, 437
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SphI GCATGC 1 cut(s) 10
Sse9I AATT 5 cut(s) 114, 360, 447, 622, 713
SsiI CCGC 1 cut(s) 566
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 4 cut(s) 412, 493, 506, 643
TaiI ACGT 1 cut(s) 219
TasI AATT 5 cut(s) 114, 360, 447, 622, 713
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 1 cut(s) 676
TseI GCWGC 5 cut(s) 299, 458, 524, 572, 650
TspDTI ATGAA 4 cut(s) 35, 427, 529, 583
TspGWI ACGGA 1 cut(s) 615
XapI RAATTY 1 cut(s) 713
XceI RCATGY 2 cut(s) 10, 436
XspI CTAG 1 cut(s) 473
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.