AT3G48480

Ulp1 protease family, C-terminal catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005644
Physical Location & Seq
Reverse (-)
17956936 .. 17959124
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48480.1

Sequence Viewer

Length: 897 bp
ATGTCAAGAAGACGAAGTAATCGTGTTCGAAATACTAATAGTAAATACGTCAGCAGTCCTGCTCGTGTTACTATTATTGATGATTGTGAGGAAGATGAGTATTTACACCACAGGACGTGTTGGAAGCATATTGCTGCTGCCTTGAGTAAGTGTGGTTCGAAACCGAAGCGAACCAAGGAGTTGGAGATATTCAAATTGACTGCTCCTTGTTTCTATGACGAATGCACACGCCGTGGGAGGTCAGAAAGAAGAATCAAGTGCAAGTATTTAGACTCCAAGCTACGGAAAAAACTGAATTCCAAAGCATTTGTAGGTTACCTAGAGGATGTATGGAGGGGCTTCTCGGATGAGAAAAAGAACTCTTTTGTCTACTTAGATTGTCTTTGGTTCAGTATGTACAAAAGTGAAAACCATAACATTAGAAGTAGTGTTTTCGATTCCGTAAAGACAAAGCAGATCTTCTCGAAGAAATACGTTTTTCTTCCTATCGTCTACTGGAGCCATTGGACTTTGTTGATCTTTTGCAATTTTGGGGAGGATCTTGATTCTGATAAAACATGCATGTTGTTTCTTGACTCACTACAAACAACTGACTCTTCGCAGCGGCTTGAACCAGATATAAGAAAGTTTGTGTTGGACATATACAGAGCTGAGGGAAGAACTGAAGACTCAAGTCTGGTTGATGAAATCCCGTTTTATGTGCCAATGGTTCCACAGCAAACAAATGATGTGGAATGTGGAAGCTTTGTCCTCTACTACATTCATCGGTTCATAGAAGACGCTCCTGAGAACTTCAACGTCGAAGATATGCCGTATTTTCTGAAAGAGGACTGGTTTAGTCATAAAGACTTGGAAAAGTTCTGTGACGAGCTTCATTCTTTGGGAACTATTCATTGA

Protein Analysis

298

Amino Acids

35.43

Weight (kDa)

7.09

Isoelectric Point (pI)

63.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 135 - 275 1.3e-13 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 369, 492
AciI CCGC 1 cut(s) 604
AclWI GGATC 1 cut(s) 546
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 684
AdeI CACNNNGTG 1 cut(s) 233
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 282
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 3 cut(s) 193, 611, 796
AjiI CACGTC 1 cut(s) 117
AluBI AGCT 4 cut(s) 280, 650, 744, 871
AluI AGCT 4 cut(s) 280, 650, 744, 871
AlwI GGATC 1 cut(s) 546
ApeKI GCWGC 3 cut(s) 134, 137, 601
ApoI RAATTY 1 cut(s) 295
AsuII TTCGAA 2 cut(s) 28, 158
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 3 cut(s) 16, 672, 783
BbvCI CCTCAGC 1 cut(s) 651
BbvI GCAGC 3 cut(s) 121, 124, 613
BceAI ACGGC 2 cut(s) 216, 796
BfaI CTAG 1 cut(s) 320
BglII AGATCT 1 cut(s) 456
BisI GCNGC 4 cut(s) 135, 138, 602, 605
BlsI GCNGC 4 cut(s) 136, 139, 603, 606
BmgBI CACGTC 1 cut(s) 117
BmiI GGNNCC 2 cut(s) 500, 711
BoxI GACNNNNGTC 1 cut(s) 672
BpiI GAAGAC 3 cut(s) 16, 672, 783
BpmI CTGGAG 1 cut(s) 517
Bpu10I CCTNAGC 1 cut(s) 651
Bpu14I TTCGAA 2 cut(s) 28, 158
BpuEI CTTGAG 2 cut(s) 163, 655
BsaJI CCNNGG 2 cut(s) 174, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 500, 836
BseDI CCNNGG 2 cut(s) 174, 232
BseGI GGATG 2 cut(s) 331, 352
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 642, 777
BseNI ACTGG 2 cut(s) 500, 836
BseXI GCAGC 3 cut(s) 121, 124, 613
BslI CCNNNNNNNGG 1 cut(s) 282
BsmI GAATGC 1 cut(s) 227
Bsp119I TTCGAA 2 cut(s) 28, 158
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 3 cut(s) 456, 516, 538
BspACI CCGC 1 cut(s) 604
BspCNI CTCAG 2 cut(s) 643, 778
BspLI GGNNCC 2 cut(s) 500, 711
BspPI GGATC 1 cut(s) 546
BspT104I TTCGAA 2 cut(s) 28, 158
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 2 cut(s) 500, 836
BssECI CCNNGG 2 cut(s) 174, 232
BssMI GATC 3 cut(s) 456, 516, 538
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 601
BstAUI TGTACA 1 cut(s) 396
BstBI TTCGAA 2 cut(s) 28, 158
BstDEI CTNAG 3 cut(s) 373, 651, 786
BstDSI CCRYGG 1 cut(s) 232
BstEII GGTNACC 1 cut(s) 314
BstF5I GGATG 2 cut(s) 331, 352
BstKTI GATC 3 cut(s) 459, 519, 541
BstMBI GATC 3 cut(s) 456, 516, 538
BstNSI RCATGY 2 cut(s) 561, 565
BstPAI GACNNNNGTC 1 cut(s) 672
BstPI GGTNACC 1 cut(s) 314
BstV1I GCAGC 3 cut(s) 121, 124, 613
BstV2I GAAGAC 3 cut(s) 16, 672, 783
BstX2I RGATCY 2 cut(s) 456, 538
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 2 cut(s) 456, 538
BtgI CCRYGG 1 cut(s) 232
BtrI CACGTC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 331, 352
CseI GACGC 1 cut(s) 788
Csp6I GTAC 1 cut(s) 397
CspCI CAANNNNNGTGG 2 cut(s) 711, 746
CviAII CATG 2 cut(s) 558, 562
CviJI RGCY 7 cut(s) 280, 339, 501, 607, 650, 744, 871
CviKI_1 RGCY 7 cut(s) 280, 339, 501, 607, 650, 744, 871
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 3 cut(s) 373, 651, 786
DpnI GATC 3 cut(s) 458, 518, 540
DpnII GATC 3 cut(s) 456, 516, 538
DraIII CACNNNGTG 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
Eco130I CCWWGG 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 314
EcoO65I GGTNACC 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 2 cut(s) 561, 565
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FatI CATG 2 cut(s) 557, 561
FblI GTMKAC 2 cut(s) 369, 492
Fnu4HI GCNGC 4 cut(s) 135, 138, 602, 605
FokI GGATG 2 cut(s) 338, 359
Fsp4HI GCNGC 4 cut(s) 135, 138, 602, 605
FspBI CTAG 1 cut(s) 320
GluI GCNGC 4 cut(s) 135, 138, 602, 605
GsuI CTGGAG 1 cut(s) 517
HgaI GACGC 1 cut(s) 788
Hin1II CATG 2 cut(s) 561, 565
HindIII AAGCTT 1 cut(s) 742
HinfI GANTC 7 cut(s) 252, 272, 437, 545, 575, 593, 668
Hpy166II GTNNAC 2 cut(s) 370, 493
Hpy188I TCNGA 4 cut(s) 244, 346, 550, 822
Hpy188III TCNNGA 5 cut(s) 6, 463, 542, 572, 785
Hpy8I GTNNAC 2 cut(s) 370, 493
Hpy99I CGWCG 1 cut(s) 803
HpyCH4IV ACGT 4 cut(s) 48, 116, 474, 798
HpyCH4V TGCA 4 cut(s) 225, 261, 525, 561
HpyF3I CTNAG 3 cut(s) 373, 651, 786
HpySE526I ACGT 4 cut(s) 48, 116, 474, 798
Hsp92II CATG 2 cut(s) 561, 565
Kzo9I GATC 3 cut(s) 456, 516, 538
LmnI GCTCC 3 cut(s) 208, 498, 787
LpnPI CCDG 7 cut(s) 72, 97, 481, 627, 662, 798, 817
Lsp1109I GCAGC 3 cut(s) 121, 124, 613
MaeI CTAG 1 cut(s) 320
MaeII ACGT 4 cut(s) 48, 116, 474, 798
MaeIII GTNAC 3 cut(s) 67, 314, 863
MalI GATC 3 cut(s) 458, 518, 540
MboI GATC 3 cut(s) 456, 516, 538
MflI RGATCY 2 cut(s) 456, 538
MluCI AATT 3 cut(s) 194, 295, 526
MlyI GAGTC 4 cut(s) 266, 569, 587, 662
MmeI TCCRAC 3 cut(s) 101, 162, 615
MnlI CCTC 8 cut(s) 82, 231, 316, 327, 529, 646, 761, 820
Mph1103I ATGCAT 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 604
Mva1269I GAATGC 1 cut(s) 227
NdeII GATC 3 cut(s) 456, 516, 538
NlaIII CATG 2 cut(s) 561, 565
NlaIV GGNNCC 2 cut(s) 500, 711
NmuCI GTSAC 1 cut(s) 863
NsiI ATGCAT 1 cut(s) 563
NspI RCATGY 2 cut(s) 561, 565
NspV TTCGAA 2 cut(s) 28, 158
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PctI GAATGC 1 cut(s) 227
PfeI GAWTC 3 cut(s) 252, 437, 545
PkrI GCNGC 4 cut(s) 136, 139, 603, 606
PleI GAGTC 4 cut(s) 266, 569, 587, 662
PpsI GAGTC 4 cut(s) 266, 569, 587, 662
PshAI GACNNNNGTC 1 cut(s) 672
PspEI GGTNACC 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 500, 711
PsrI GAACNNNNNNTAC 2 cut(s) 139, 171
PsuI RGATCY 2 cut(s) 456, 538
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SatI GCNGC 4 cut(s) 135, 138, 602, 605
Sau3AI GATC 3 cut(s) 456, 516, 538
SchI GAGTC 4 cut(s) 266, 569, 587, 662
SfuI TTCGAA 2 cut(s) 28, 158
SmlI CTYRAG 2 cut(s) 142, 670
SmoI CTYRAG 2 cut(s) 142, 670
Sse9I AATT 3 cut(s) 194, 295, 526
SsiI CCGC 1 cut(s) 604
SspMI CTAG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 174
TaiI ACGT 4 cut(s) 51, 119, 477, 801
TaqI TCGA 5 cut(s) 28, 158, 435, 464, 801
TasI AATT 3 cut(s) 194, 295, 526
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 3 cut(s) 252, 437, 545
TseFI GTSAC 1 cut(s) 863
TseI GCWGC 3 cut(s) 134, 137, 601
Tsp45I GTSAC 1 cut(s) 863
TspDTI ATGAA 5 cut(s) 699, 752, 760, 863, 881
TspGWI ACGGA 2 cut(s) 298, 430
XapI RAATTY 1 cut(s) 295
XceI RCATGY 2 cut(s) 561, 565
XmiI GTMKAC 2 cut(s) 369, 492
XspI CTAG 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.