Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Forward (+)

9942132 .. 9944427

Gene Structure 2296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGGAAGGAGAAAACCTAGCAGCGACGGTCCCATTAACATTGACTCCGACTCCGAACCCGAACCCGAGTCCGACCTGAAGTGCTCGATTTCAGAGATTTACAATGATCAACTGTCAAAGCATCGAACATGTTGGATGCATGTATTAGCAGCTTCGAAAGCTCAAAGACAGAGCTTGACTCGGGGAGAAACTGAAGAGATCAAAAAGATATCCCCATGCTTTTTAACTTTTTCTTCTCACCGCCAGAGATCAACCAGGTGTGTTAAGAGCAAGTATGTCAACCGTGAAGTGTCAAGAAAAACACAGAACCAAGACACTAAAACGTGTTCAGTGTCAAGAAGAAAACCAGTGCCAGTCTCTCGAGCTTGTAGAGTGTCACGGAAGAAACAGAAGCTAGGCTCTGAGGCCTTTGAGTGCTACTTTGAGAACTTATGGAAGAGCTTCTCTGAGGACAAGAAAACTTCCTTCACATACCTTGACTGTTTATGGTTTTCCTTGTACATTAAACCAACCACCACAGACAAGGTGCTAACCTGGATTAAGAAGAAGCATATTTTTTCAAAGAAATATGTTTTTGTTCCTATTGTGTGCTGGAGCCACTGGAACCTACTAATATTGTGTCATTTTGGTGAGAATCTCAAATCAAAGACACAAAGACCATGCATGTTGTTGCTTGATTCTCTTGAAATGGCAGATCCGAGGAGGCTCGAACCAAATATAAGAAAATTTGTAGTGGACATCTTTAGAGAAGAGGGTAGGCCTGAGAATATGAATCTTCTGAGAAAAATTCCTCTTTTGATACCTAAGGTGCCACAGCAGAGAAATGATGAGGAATGTGGTAATTTTGTTCTCTACTTCATTAATTTGTTCACGGAGAGTGCTCCGCAGAATTTTAGCATGGAGGGCTACCCTTACTTTATGAAGAAAAACTGGTTTACATATGAAAGCTTGGATTGCTTCTGCCAGGAACTCTATTCCTCAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

329

Amino Acids

38.77

Weight (kDa)

9.28

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	175 - 308	2.5e-11	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	808
AciI	CCGC	2 cut(s)	241, 884
AclWI	GGATC	1 cut(s)	689
AcsI	RAATTY	3 cut(s)	725, 786, 889
AcuI	CTGAAG	2 cut(s)	98, 213
AfaI	GTAC	1 cut(s)	500
AflIII	ACRYGT	2 cut(s)	128, 323
AgsI	TTSAA	2 cut(s)	561, 686
AjnI	CCWGG	3 cut(s)	254, 533, 963
AluBI	AGCT	7 cut(s)	152, 161, 174, 365, 394, 441, 948
AluI	AGCT	7 cut(s)	152, 161, 174, 365, 394, 441, 948
Alw21I	GWGCWC	2 cut(s)	86, 883
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	689
Ama87I	CYCGRG	3 cut(s)	65, 180, 360
AoxI	GGCC	2 cut(s)	405, 758
ApeKI	GCWGC	2 cut(s)	21, 149
ApoI	RAATTY	3 cut(s)	725, 786, 889
AseI	ATTAAT	1 cut(s)	861
Asp700I	GAANNNNTTC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	230, 641
AsuII	TTCGAA	1 cut(s)	155
AvaI	CYCGRG	3 cut(s)	65, 180, 360
AvaII	GGWCC	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	804
BanI	GGYRCC	1 cut(s)	808
Bbv12I	GWGCWC	2 cut(s)	86, 883
BbvCI	CCTCAGC	1 cut(s)	979
BbvI	GCAGC	2 cut(s)	33, 161
BciT130I	CCWGG	3 cut(s)	256, 535, 965
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	2 cut(s)	18, 395
BisI	GCNGC	2 cut(s)	22, 150
BlsI	GCNGC	2 cut(s)	23, 151
Bme1390I	CCNGG	3 cut(s)	256, 535, 965
Bme18I	GGWCC	1 cut(s)	29
BmeT110I	CYCGRG	3 cut(s)	65, 180, 360
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	4 cut(s)	31, 596, 605, 810
BmrFI	CCNGG	3 cut(s)	256, 535, 965
BmsI	GCATC	2 cut(s)	126, 130
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	979
Bpu14I	TTCGAA	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	698
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 35, 59, 65
Bse1I	ACTGG	4 cut(s)	347, 353, 605, 935
Bse21I	CCTNAGG	1 cut(s)	804
BseBI	CCWGG	3 cut(s)	256, 535, 965
BseDI	CCNNGG	1 cut(s)	698
BseGI	GGATG	1 cut(s)	141
BseMII	CTCAG	4 cut(s)	393, 438, 753, 770
BseNI	ACTGG	4 cut(s)	347, 353, 605, 935
BseRI	GAGGAG	1 cut(s)	715
BseXI	GCAGC	2 cut(s)	33, 161
BshFI	GGCC	2 cut(s)	407, 760
BshNI	GGYRCC	1 cut(s)	808
BsiHKAI	GWGCWC	2 cut(s)	86, 883
BsiHKCI	CYCGRG	3 cut(s)	65, 180, 360
BslFI	GGGAC	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	407, 760
BsoBI	CYCGRG	3 cut(s)	65, 180, 360
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	86, 883
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	4 cut(s)	106, 198, 248, 694
BspACI	CCGC	2 cut(s)	241, 884
BspANI	GGCC	2 cut(s)	407, 760
BspCNI	CTCAG	4 cut(s)	394, 439, 754, 771
BspLI	GGNNCC	4 cut(s)	31, 596, 605, 810
BspPI	GGATC	1 cut(s)	689
BspQI	GCTCTTC	1 cut(s)	431
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	808
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	4 cut(s)	347, 353, 605, 935
BssECI	CCNNGG	1 cut(s)	698
BssMI	GATC	4 cut(s)	106, 198, 248, 694
Bst2UI	CCWGG	3 cut(s)	256, 535, 965
Bst4CI	ACNGT	4 cut(s)	29, 114, 284, 482
Bst6I	CTCTTC	3 cut(s)	189, 431, 744
BstAUI	TGTACA	1 cut(s)	498
BstBI	TTCGAA	1 cut(s)	155
BstDEI	CTNAG	6 cut(s)	402, 447, 762, 779, 804, 979
BstF5I	GGATG	1 cut(s)	141
BstKTI	GATC	4 cut(s)	109, 201, 251, 697
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	4 cut(s)	106, 198, 248, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 903, 954
BstNI	CCWGG	3 cut(s)	256, 535, 965
BstNSI	RCATGY	3 cut(s)	132, 143, 667
BstSCI	CCNGG	3 cut(s)	254, 533, 963
BstV1I	GCAGC	2 cut(s)	33, 161
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
Bsu36I	CCTNAGG	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	407, 760
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	3 cut(s)	336, 354, 598
Cfr13I	GGNCC	1 cut(s)	29
CsiI	ACCWGGT	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	6 cut(s)	129, 140, 216, 660, 664, 898
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	6 cut(s)	402, 447, 762, 779, 804, 979
DpnI	GATC	4 cut(s)	108, 200, 250, 696
DpnII	GATC	4 cut(s)	106, 198, 248, 694
Eam1104I	CTCTTC	3 cut(s)	189, 431, 744
EarI	CTCTTC	3 cut(s)	189, 431, 744
Eco147I	AGGCCT	2 cut(s)	407, 760
Eco32I	GATATC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	98, 213
Eco81I	CCTNAGG	1 cut(s)	804
Eco88I	CYCGRG	3 cut(s)	65, 180, 360
EcoRII	CCWGG	3 cut(s)	254, 533, 963
EcoRV	GATATC	1 cut(s)	210
EcoT22I	ATGCAT	2 cut(s)	141, 665
FaeI	CATG	6 cut(s)	132, 143, 219, 663, 667, 901
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	6 cut(s)	128, 139, 215, 659, 663, 897
FauNDI	CATATG	1 cut(s)	940
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	22, 150
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	22, 150
FspBI	CTAG	2 cut(s)	18, 395
GluI	GCNGC	2 cut(s)	22, 150
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	2 cut(s)	407, 760
Hin1II	CATG	6 cut(s)	132, 143, 219, 663, 667, 901
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	946
HinfI	GANTC	7 cut(s)	44, 50, 68, 178, 634, 677, 772
HphI	GGTGA	2 cut(s)	230, 641
Hpy166II	GTNNAC	4 cut(s)	280, 736, 870, 936
Hpy188I	TCNGA	8 cut(s)	49, 55, 73, 94, 403, 448, 699, 780
Hpy188III	TCNNGA	4 cut(s)	294, 336, 360, 683
Hpy8I	GTNNAC	4 cut(s)	280, 736, 870, 936
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	4 cut(s)	29, 114, 284, 482
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	2 cut(s)	139, 663
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 903, 954
HpyF3I	CTNAG	6 cut(s)	402, 447, 762, 779, 804, 979
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	6 cut(s)	132, 143, 219, 663, 667, 901
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	106, 198, 248, 694
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	2 cut(s)	594, 886
Lsp1109I	GCAGC	2 cut(s)	33, 161
LweI	GCATC	2 cut(s)	126, 130
MabI	ACCWGGT	1 cut(s)	254
MaeI	CTAG	2 cut(s)	18, 395
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	4 cut(s)	108, 200, 250, 696
MboI	GATC	4 cut(s)	106, 198, 248, 694
MboII	GAAGA	9 cut(s)	206, 225, 351, 394, 448, 556, 761, 767, 934
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	2 cut(s)	86, 883
MluCI	AATT	5 cut(s)	725, 786, 841, 862, 889
MlyI	GAGTC	4 cut(s)	38, 44, 77, 172
MmeI	TCCRAC	3 cut(s)	72, 96, 113
MnlI	CCTC	9 cut(s)	397, 442, 693, 696, 745, 801, 823, 895, 988
Mph1103I	ATGCAT	2 cut(s)	141, 665
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	6 cut(s)	36, 224, 264, 504, 540, 861
MslI	CAYNNNNRTG	1 cut(s)	627
MspR9I	CCNGG	3 cut(s)	256, 535, 965
MvaI	CCWGG	3 cut(s)	256, 535, 965
MwoI	GCNNNNNNNGC	3 cut(s)	158, 903, 954
NdeI	CATATG	1 cut(s)	940
NdeII	GATC	4 cut(s)	106, 198, 248, 694
NlaIII	CATG	6 cut(s)	132, 143, 219, 663, 667, 901
NlaIV	GGNNCC	4 cut(s)	31, 596, 605, 810
NmuCI	GTSAC	1 cut(s)	375
NsiI	ATGCAT	2 cut(s)	141, 665
NspI	RCATGY	3 cut(s)	132, 143, 667
NspV	TTCGAA	1 cut(s)	155
PaeR7I	CTCGAG	1 cut(s)	360
PceI	AGGCCT	2 cut(s)	407, 760
PciI	ACATGT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	634, 677, 772
PkrI	GCNGC	2 cut(s)	23, 151
PleI	GAGTC	4 cut(s)	38, 44, 76, 172
PpsI	GAGTC	4 cut(s)	38, 44, 76, 172
PscI	ACATGT	1 cut(s)	128
PshBI	ATTAAT	1 cut(s)	861
Psp6I	CCWGG	3 cut(s)	254, 533, 963
PspGI	CCWGG	3 cut(s)	254, 533, 963
PspN4I	GGNNCC	4 cut(s)	31, 596, 605, 810
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	627
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	6 cut(s)	36, 224, 264, 504, 540, 861
SatI	GCNGC	2 cut(s)	22, 150
Sau3AI	GATC	4 cut(s)	106, 198, 248, 694
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	4 cut(s)	38, 44, 77, 172
ScrFI	CCNGG	3 cut(s)	256, 535, 965
SduI	GDGCHC	2 cut(s)	86, 883
SexAI	ACCWGGT	1 cut(s)	254
SfaNI	GCATC	2 cut(s)	126, 130
Sfr274I	CTCGAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	155
SinI	GGWCC	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	5 cut(s)	725, 786, 841, 862, 889
SseBI	AGGCCT	2 cut(s)	407, 760
SsiI	CCGC	2 cut(s)	241, 884
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	2 cut(s)	18, 395
StuI	AGGCCT	2 cut(s)	407, 760
StyD4I	CCNGG	3 cut(s)	254, 533, 963
TaaI	ACNGT	4 cut(s)	29, 114, 284, 482
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	5 cut(s)	86, 124, 155, 361, 708
TasI	AATT	5 cut(s)	725, 786, 841, 862, 889
TatI	WGTACW	1 cut(s)	498
TfiI	GAWTC	3 cut(s)	634, 677, 772
Tru1I	TTAA	6 cut(s)	36, 224, 264, 504, 540, 861
Tru9I	TTAA	6 cut(s)	36, 224, 264, 504, 540, 861
TscAI	CASTG	3 cut(s)	336, 354, 605
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	2 cut(s)	21, 149
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	4 cut(s)	785, 847, 935, 957
TspGWI	ACGGA	2 cut(s)	394, 887
TspRI	CASTG	3 cut(s)	336, 354, 605
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	3 cut(s)	725, 786, 889
XceI	RCATGY	3 cut(s)	132, 143, 667
XhoI	CTCGAG	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	2 cut(s)	18, 395
Zsp2I	ATGCAT	2 cut(s)	141, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.