Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Forward (+)

43467260 .. 43469214

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0316900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAGCATGGCGGCCCAGCTCAGCTTCCTCAAGCTTCCTGTTCTCCTTCCCCACAAAACCAACTATTGCATCTCAAAATTACAAGTACAACCCTCATCATCAAAACCCAATATTCCAAAGCAGGACTCAACTCCTTCCCCACAGAAACTAGTCACAACCACCCTCCACAGCCTCAAGTCAGCTTCTCTTCCCCTCACAGCTCTCACATTGCCATTTTTCTTGGACCCCAAGGATGCATTTGCTGTTGGTGGGGAGTTTGGGATTTTGGAGGGAAGGACGTTTGCTCTGATACACCCAATTGTGATGGGCGGGTTGTTCGTTTACACATTGTGGGCCGGGTATTTGGGCTGGCAATGGAGGAGGGTCAGGACAATCCAGAATGAGATTAGTGAGCTCAAGAAGCAAGAGAAGCCTACCCCTGTCACACCAGATGGGACACCAGTTGAAGCACCACCATCTCCTGTTGCTCTTCAAATTAAGCAACTCAGTGAGGAAAGGAAGGAGTTGGTGAAAGGGAATTACCGGGATAGACACTTCAATGCAGGATCAATACTGCTCGCTTTTGGAGTTTTTGAGGCGATTGGTGGAGGAGTTAACACATGGTTTAGGACTGGAAAGCTATTTCCGGGTCCCCATTTGTTTGCAGGAGCAGGCATCACGGTGCTATGGGCAGCAGCTGCTGCACTTGTACCTGCAATGCAAAAGGGGAATGAGACGGCTAGAAGCCTTCACATTGCAATCAACGCGATAAACGTTCTGCTTTTCATATGGCAGATACCTACTGGACTTGACATAGTTTGGAAAGTGTTTGAATTCACTAAATGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

276

Amino Acids

30.38

Weight (kDa)

9.68

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4079	PF13301	95 - 268	7.8e-46	Protein of unknown function (DUF4079)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	700
AccII	CGCG	1 cut(s)	746
AciI	CCGC	2 cut(s)	11, 309
AclI	AACGTT	1 cut(s)	753
AclWI	GGATC	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	812
AdeI	CACNNNGTG	1 cut(s)	330
AfaI	GTAC	2 cut(s)	87, 690
AgsI	TTSAA	4 cut(s)	446, 473, 538, 812
AhlI	ACTAGT	1 cut(s)	148
AluBI	AGCT	8 cut(s)	19, 24, 34, 182, 200, 394, 619, 677
AluI	AGCT	8 cut(s)	19, 24, 34, 182, 200, 394, 619, 677
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	707
AlwI	GGATC	1 cut(s)	553
AlwNI	CAGNNNCTG	2 cut(s)	677, 680
AoxI	GGCC	3 cut(s)	12, 333, 824
ApeKI	GCWGC	4 cut(s)	671, 674, 677, 680
ApoI	RAATTY	1 cut(s)	812
AspS9I	GGNCC	4 cut(s)	13, 223, 333, 629
AsuC2I	CCSGG	3 cut(s)	337, 524, 627
AsuHPI	GGTGA	1 cut(s)	520
AvaII	GGWCC	2 cut(s)	223, 629
BanII	GRGCYC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	664, 667, 683, 686
BccI	CCATC	3 cut(s)	298, 425, 463
BceAI	ACGGC	1 cut(s)	732
BcnI	CCSGG	3 cut(s)	337, 524, 627
BcoDI	GTCTC	1 cut(s)	707
BcuI	ACTAGT	1 cut(s)	148
BfaI	CTAG	2 cut(s)	149, 720
BfuAI	ACCTGC	1 cut(s)	700
BisI	GCNGC	5 cut(s)	12, 672, 675, 678, 681
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	5 cut(s)	13, 673, 676, 679, 682
Bme1390I	CCNGG	3 cut(s)	337, 524, 627
Bme18I	GGWCC	2 cut(s)	223, 629
BmgT120I	GGNCC	4 cut(s)	13, 223, 333, 629
BmiI	GGNNCC	3 cut(s)	225, 630, 631
BmrFI	CCNGG	3 cut(s)	337, 524, 627
BmsI	GCATC	3 cut(s)	78, 223, 663
Bpu1102I	GCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	3 cut(s)	14, 158, 380
BpuMI	CCSGG	3 cut(s)	337, 524, 627
BsaJI	CCNNGG	1 cut(s)	228
Bse1I	ACTGG	3 cut(s)	440, 616, 787
Bse3DI	GCAATG	4 cut(s)	206, 359, 702, 732
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	238
BseMI	GCAATG	4 cut(s)	206, 359, 702, 732
BseMII	CTCAG	2 cut(s)	34, 499
BseNI	ACTGG	3 cut(s)	440, 616, 787
BseRI	GAGGAG	2 cut(s)	373, 603
BseXI	GCAGC	4 cut(s)	664, 667, 683, 686
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	666
Bsh1236I	CGCG	1 cut(s)	746
BshFI	GGCC	3 cut(s)	14, 335, 826
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	336, 523, 626
BslFI	GGGAC	2 cut(s)	448, 615
BsmAI	GTCTC	1 cut(s)	707
BsmBI	CGTCTC	1 cut(s)	707
BsmFI	GGGAC	2 cut(s)	448, 615
BsnI	GGCC	3 cut(s)	14, 335, 826
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	545
Bsp1720I	GCTNAGC	1 cut(s)	20
BspACI	CCGC	2 cut(s)	11, 309
BspANI	GGCC	3 cut(s)	14, 335, 826
BspCNI	CTCAG	2 cut(s)	33, 498
BspFNI	CGCG	1 cut(s)	746
BspLI	GGNNCC	3 cut(s)	225, 630, 631
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	1 cut(s)	553
BspQI	GCTCTTC	1 cut(s)	474
BsrDI	GCAATG	4 cut(s)	206, 359, 702, 732
BsrI	ACTGG	3 cut(s)	440, 616, 787
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	545
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	661
Bst6I	CTCTTC	2 cut(s)	192, 474
BstAPI	GCANNNNNTGC	2 cut(s)	677, 680
BstC8I	GCNNGC	3 cut(s)	350, 558, 652
BstDEI	CTNAG	2 cut(s)	20, 485
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	746
BstKTI	GATC	1 cut(s)	548
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	1 cut(s)	545
BstMWI	GCNNNNNNNGC	5 cut(s)	400, 409, 677, 680, 743
BstSCI	CCNGG	3 cut(s)	335, 522, 625
BstUI	CGCG	1 cut(s)	746
BstV1I	GCAGC	4 cut(s)	664, 667, 683, 686
BsuRI	GGCC	3 cut(s)	14, 335, 826
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	3 cut(s)	350, 558, 652
CaiI	CAGNNNCTG	2 cut(s)	677, 680
Cfr13I	GGNCC	4 cut(s)	13, 223, 333, 629
Csp6I	GTAC	2 cut(s)	86, 689
CviAII	CATG	2 cut(s)	7, 600
CviQI	GTAC	2 cut(s)	86, 689
DdeI	CTNAG	2 cut(s)	20, 485
DpnI	GATC	1 cut(s)	547
DpnII	GATC	1 cut(s)	545
DraIII	CACNNNGTG	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	192, 474
EarI	CTCTTC	2 cut(s)	192, 474
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	223, 629
Eco53kI	GAGCTC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	629
EcoRI	GAATTC	1 cut(s)	812
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	707
FaeI	CATG	2 cut(s)	10, 603
FaiI	YATR	6 cut(s)	8, 601, 667, 767, 769, 794
FaqI	GGGAC	2 cut(s)	448, 615
FatI	CATG	2 cut(s)	6, 599
FauI	CCCGC	1 cut(s)	302
FauNDI	CATATG	1 cut(s)	767
Fnu4HI	GCNGC	5 cut(s)	12, 672, 675, 678, 681
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	5 cut(s)	12, 672, 675, 678, 681
FspBI	CTAG	2 cut(s)	149, 720
GluI	GCNGC	5 cut(s)	12, 672, 675, 678, 681
GsaI	CCCAGC	1 cut(s)	19
HaeIII	GGCC	3 cut(s)	14, 335, 826
HapII	CCGG	3 cut(s)	336, 523, 626
Hin1II	CATG	2 cut(s)	10, 603
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	1 cut(s)	125
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	3 cut(s)	336, 523, 626
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	322, 595
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	3 cut(s)	367, 376, 397
Hpy8I	GTNNAC	2 cut(s)	322, 595
HpyAV	CCTTC	5 cut(s)	56, 144, 267, 493, 737
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4IV	ACGT	2 cut(s)	278, 753
HpyCH4V	TGCA	8 cut(s)	69, 236, 542, 644, 683, 695, 700, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	400, 409, 677, 680, 743
HpyF3I	CTNAG	2 cut(s)	20, 485
HpySE526I	ACGT	2 cut(s)	278, 753
Hsp92II	CATG	2 cut(s)	10, 603
KflI	GGGWCCC	1 cut(s)	629
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	1 cut(s)	545
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	1 cut(s)	647
Lsp1109I	GCAGC	4 cut(s)	664, 667, 683, 686
LweI	GCATC	3 cut(s)	78, 223, 663
MaeI	CTAG	2 cut(s)	149, 720
MaeII	ACGT	2 cut(s)	278, 753
MaeIII	GTNAC	2 cut(s)	151, 421
MalI	GATC	1 cut(s)	547
MboI	GATC	1 cut(s)	545
MboII	GAAGA	2 cut(s)	179, 461
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	5 cut(s)	77, 297, 474, 517, 812
MlyI	GAGTC	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	2 cut(s)	477, 594
MslI	CAYNNNNRTG	2 cut(s)	537, 659
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	3 cut(s)	336, 523, 626
MspR9I	CCNGG	3 cut(s)	337, 524, 627
MunI	CAATTG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	746
MwoI	GCNNNNNNNGC	5 cut(s)	400, 409, 677, 680, 743
NciI	CCSGG	3 cut(s)	337, 524, 627
NdeI	CATATG	1 cut(s)	767
NdeII	GATC	1 cut(s)	545
NlaIII	CATG	2 cut(s)	10, 603
NlaIV	GGNNCC	3 cut(s)	225, 630, 631
NmuCI	GTSAC	2 cut(s)	151, 421
NsiI	ATGCAT	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	750
PkrI	GCNGC	5 cut(s)	13, 673, 676, 679, 682
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	629
Psp124BI	GAGCTC	1 cut(s)	396
Psp1406I	AACGTT	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	629
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	225, 630, 631
PspPI	GGNCC	4 cut(s)	13, 223, 333, 629
PspPPI	RGGWCCY	1 cut(s)	629
PstNI	CAGNNNCTG	2 cut(s)	677, 680
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	2 cut(s)	87, 690
RsaNI	GTAC	2 cut(s)	86, 689
RseI	CAYNNNNRTG	2 cut(s)	537, 659
SacI	GAGCTC	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	477, 594
SatI	GCNGC	5 cut(s)	12, 672, 675, 678, 681
Sau3AI	GATC	1 cut(s)	545
Sau96I	GGNCC	4 cut(s)	13, 223, 333, 629
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	337, 524, 627
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	3 cut(s)	78, 223, 663
SinI	GGWCC	2 cut(s)	223, 629
SmiMI	CAYNNNNRTG	2 cut(s)	537, 659
SmlI	CTYRAG	3 cut(s)	29, 173, 395
SmoI	CTYRAG	3 cut(s)	29, 173, 395
SpeI	ACTAGT	1 cut(s)	148
Sse9I	AATT	5 cut(s)	77, 297, 474, 517, 812
SsiI	CCGC	2 cut(s)	11, 309
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	149, 720
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	335, 522, 625
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	661
TaiI	ACGT	2 cut(s)	281, 756
TasI	AATT	5 cut(s)	77, 297, 474, 517, 812
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	477, 594
Tru9I	TTAA	2 cut(s)	477, 594
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	151, 421
TseI	GCWGC	4 cut(s)	671, 674, 677, 680
Tsp45I	GTSAC	2 cut(s)	151, 421
TspDTI	ATGAA	1 cut(s)	754
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	223, 629
XapI	RAATTY	1 cut(s)	812
XspI	CTAG	2 cut(s)	149, 720
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.