Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Forward (+)

31800420 .. 31801337

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG152500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTGCAGGAACTTATGGAAGAGCTTCTCTGAGGACAAGAAAACTTCCTGCACATACCTTGACTGTTTATGGTTTACCTTGTACATTAAACCAACCACCACAGACAAGGTGCTAACCTGGATTAAGAAGAAGCATATTTTTTCAAAGAAATATGTTTTTGTTCCTATTGTGTGCTGGAGCCACTGGAACCTACTAATATTGTGTCATTTTGGTGAGAATCTCGAATCAAATACCCAAAGACCATGCATGTTGTTGTTTGATTCTCTTGAAATGGCAGATCCGAGGAGGCTCGAACCAAATATAAGAAAATTTGTAGTGGACATCTTTAGAGAAGAGGGTAGGCCTGAGAATATGAATCTTCTGAGAAAAATTCCTCTTTTGATACCTAAGGTGCCACAGCAGAGAAATGATGAGGAATGTGGTAATTTTGTTCTCTACTTCATTAATTTGTTCACGGAGAGTGCTCCGCAGAATTTTAGCATGGAGGGCTACCCTTACTTTATGAAGAAAAACTGGTTTACATATGAAAGCTTGGATTGCTTCTGCCAGGAACTCTATTCCTCAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

190

Amino Acids

22.84

Weight (kDa)

8.32

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	36 - 169	3.9e-12	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	391
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	3 cut(s)	308, 369, 472
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	144, 269
AjnI	CCWGG	2 cut(s)	116, 546
AluBI	AGCT	2 cut(s)	24, 531
AluI	AGCT	2 cut(s)	24, 531
Alw21I	GWGCWC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	341
ApoI	RAATTY	3 cut(s)	308, 369, 472
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	562
BciT130I	CCWGG	2 cut(s)	118, 548
Bme1390I	CCNGG	2 cut(s)	118, 548
BmiI	GGNNCC	3 cut(s)	179, 188, 393
BmrFI	CCNGG	2 cut(s)	118, 548
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	562
BsaJI	CCNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	188, 518
Bse21I	CCTNAGG	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	118, 548
BseDI	CCNNGG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	21, 336, 353
BseNI	ACTGG	2 cut(s)	188, 518
BseRI	GAGGAG	1 cut(s)	298
BsgI	GTGCAG	2 cut(s)	25, 34
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	3 cut(s)	22, 337, 354
BspLI	GGNNCC	3 cut(s)	179, 188, 393
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	391
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	188, 518
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	118, 548
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	2 cut(s)	14, 327
BstAUI	TGTACA	1 cut(s)	81
BstDEI	CTNAG	5 cut(s)	30, 345, 362, 387, 562
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	486, 537
BstNI	CCWGG	2 cut(s)	118, 548
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	116, 546
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	3 cut(s)	243, 247, 481
CviJI	RGCY	6 cut(s)	24, 180, 289, 343, 489, 531
CviKI_1	RGCY	6 cut(s)	24, 180, 289, 343, 489, 531
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	5 cut(s)	30, 345, 362, 387, 562
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eam1104I	CTCTTC	2 cut(s)	14, 327
EarI	CTCTTC	2 cut(s)	14, 327
Eco147I	AGGCCT	1 cut(s)	343
Eco81I	CCTNAGG	1 cut(s)	387
EcoRII	CCWGG	2 cut(s)	116, 546
EcoT22I	ATGCAT	1 cut(s)	248
FaeI	CATG	3 cut(s)	246, 250, 484
FatI	CATG	3 cut(s)	242, 246, 480
FauNDI	CATATG	1 cut(s)	523
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	343
Hin1II	CATG	3 cut(s)	246, 250, 484
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	4 cut(s)	217, 224, 260, 355
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	4 cut(s)	75, 319, 453, 519
Hpy188I	TCNGA	3 cut(s)	31, 282, 363
Hpy188III	TCNNGA	2 cut(s)	221, 266
Hpy8I	GTNNAC	4 cut(s)	75, 319, 453, 519
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	3 cut(s)	6, 51, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	486, 537
HpyF3I	CTNAG	5 cut(s)	30, 345, 362, 387, 562
Hsp92II	CATG	3 cut(s)	246, 250, 484
Kzo9I	GATC	1 cut(s)	277
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	177, 469
LpnPI	CCDG	9 cut(s)	61, 103, 130, 160, 169, 357, 499, 533, 560
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	5 cut(s)	31, 139, 344, 350, 517
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	5 cut(s)	308, 369, 424, 445, 472
MnlI	CCTC	8 cut(s)	25, 276, 279, 328, 384, 406, 478, 571
Mph1103I	ATGCAT	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	3 cut(s)	87, 123, 444
MslI	CAYNNNNRTG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	118, 548
MvaI	CCWGG	2 cut(s)	118, 548
MwoI	GCNNNNNNNGC	2 cut(s)	486, 537
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	3 cut(s)	246, 250, 484
NlaIV	GGNNCC	3 cut(s)	179, 188, 393
NsiI	ATGCAT	1 cut(s)	248
NspI	RCATGY	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	217, 224, 260, 355
PshBI	ATTAAT	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	116, 546
PspGI	CCWGG	2 cut(s)	116, 546
PspN4I	GGNNCC	3 cut(s)	179, 188, 393
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	87, 123, 444
Sau3AI	GATC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	118, 548
SduI	GDGCHC	1 cut(s)	466
SetI	ASST	9 cut(s)	26, 60, 80, 111, 119, 192, 388, 393, 533
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	5 cut(s)	308, 369, 424, 445, 472
SseBI	AGGCCT	1 cut(s)	343
SsiI	CCGC	1 cut(s)	467
SspI	AATATT	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	116, 546
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	222, 291
TasI	AATT	5 cut(s)	308, 369, 424, 445, 472
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	4 cut(s)	217, 224, 260, 355
Tru1I	TTAA	3 cut(s)	87, 123, 444
Tru9I	TTAA	3 cut(s)	87, 123, 444
TscAI	CASTG	1 cut(s)	188
TspDTI	ATGAA	4 cut(s)	368, 430, 518, 540
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	3 cut(s)	308, 369, 472
XceI	RCATGY	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.