Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Forward (+)

30052214 .. 30052767

Gene Structure 554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG137300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCAGATCCGAGGAGGCTCGAACCAAATATAAGAAAATTTGTAGTGGACATCTTTAGAGAAGAGGGTAGGCCTGAGAATATGAATCTTCTGAGAAAAATTCCTCTTTTGATACCTAAGGTGCCACAGCAGAGAAATGATGAGGAATGTGGTAATTTTGTTCTCTACTTCATTAATTTGTTCACGGAGAGTGCTCCGCAGAATTTTAGCATGGAGGGCTACCCTTACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

77

Amino Acids

9.19

Weight (kDa)

5.36

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	38 - 70	5.3e-07	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	2
AcsI	RAATTY	3 cut(s)	38, 99, 202
Alw21I	GWGCWC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	2
AoxI	GGCC	1 cut(s)	71
ApoI	RAATTY	3 cut(s)	38, 99, 202
AseI	ATTAAT	1 cut(s)	174
AxyI	CCTNAGG	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	11
Bse21I	CCTNAGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	66, 83
BseRI	GAGGAG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	67, 84
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	75, 92, 117
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
Bsu36I	CCTNAGG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	73
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	3 cut(s)	19, 73, 219
CviKI_1	RGCY	3 cut(s)	19, 73, 219
DdeI	CTNAG	3 cut(s)	75, 92, 117
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	73
Eco81I	CCTNAGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	214
FaiI	YATR	3 cut(s)	32, 83, 212
FatI	CATG	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	214
HinfI	GANTC	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	49, 183
Hpy188I	TCNGA	2 cut(s)	12, 93
Hpy8I	GTNNAC	2 cut(s)	49, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	3 cut(s)	75, 92, 117
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	1 cut(s)	87
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	2 cut(s)	74, 80
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	5 cut(s)	38, 99, 154, 175, 202
MnlI	CCTC	6 cut(s)	6, 9, 58, 114, 136, 208
MseI	TTAA	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	216
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	2 cut(s)	118, 123
SgeI	CNNG	5 cut(s)	24, 32, 86, 196, 223
Sse9I	AATT	5 cut(s)	38, 99, 154, 175, 202
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	197
StuI	AGGCCT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	21
TasI	AATT	5 cut(s)	38, 99, 154, 175, 202
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	98, 160
TspGWI	ACGGA	1 cut(s)	200
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	3 cut(s)	38, 99, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.