Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005903.1

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Reverse (-)

26106 .. 28113

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005903.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgggaaggagaaaacctagcagcgacggacccattaacattgactccgactccgaacccgagtccgacctgaagtgctcgatttcagcagcttcgaaagctcaaagacagagcttgactcggggagaaactgaagagatcaaaaagatatccccatgctttttaactttttctcctcaccgccagagatcaacgaggtgtgttaagagcaagtatgtcaaccgtgaagtgtcaagaaaaacacagaaccaagacactaaaacgtgttcagtgtcaagaagaaaaccagtgccagtctctcgagcttgtagagtgtcacggaagaaacagaagctaggctctgaggcctttgagtgctactttgagaacttatggaagagcttctctgaggacaagaaaacttcctgcacataccttgactgtttatggttttccttgtacattaaaccaaccaccacagacaaggtgctaacctggattaagaagaagcatattttttcaaagaaatatgtttttgttcctattgtgtgctggagccactggaacctactaatattgtgtcattttggtgagaatctcgaatcaaagacccaaagaccatgcatgttgttgcttgattctcttgaaatggcagatccgaggaggctcgaaccaaatataagaaaatttgtagtggacatctttagagaagagggtaggcctgagaatatgaatcttctgagaaaaattcctcttttgatacctaaggtgccacagcagagaaatgatgaggaatgtggtaattttgttctctacttcattaatttgttcacggagagtgctccgcagaattttagcatggagggctacccttactttatgaagaaaaactggtttacatatgaaagcttggattgcttctgccaggaactctattcctcagcaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

309

Amino Acids

36.25

Weight (kDa)

9.25

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	748
AciI	CCGC	2 cut(s)	181, 824
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	3 cut(s)	665, 726, 829
AcuI	CTGAAG	2 cut(s)	92, 153
AfaI	GTAC	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	501, 626
AjnI	CCWGG	2 cut(s)	473, 903
AluBI	AGCT	7 cut(s)	92, 101, 114, 305, 334, 381, 888
AluI	AGCT	7 cut(s)	92, 101, 114, 305, 334, 381, 888
Alw21I	GWGCWC	2 cut(s)	80, 823
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	629
Ama87I	CYCGRG	3 cut(s)	59, 120, 300
AoxI	GGCC	2 cut(s)	345, 698
ApeKI	GCWGC	2 cut(s)	21, 89
ApoI	RAATTY	3 cut(s)	665, 726, 829
AseI	ATTAAT	1 cut(s)	801
Asp700I	GAANNNNTTC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	170, 581
AsuII	TTCGAA	1 cut(s)	95
AvaI	CYCGRG	3 cut(s)	59, 120, 300
AvaII	GGWCC	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	744
BanI	GGYRCC	1 cut(s)	748
Bbv12I	GWGCWC	2 cut(s)	80, 823
BbvCI	CCTCAGC	1 cut(s)	919
BbvI	GCAGC	2 cut(s)	33, 101
BciT130I	CCWGG	2 cut(s)	475, 905
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	18, 335
BisI	GCNGC	2 cut(s)	22, 90
BlsI	GCNGC	2 cut(s)	23, 91
Bme1390I	CCNGG	2 cut(s)	475, 905
Bme18I	GGWCC	1 cut(s)	29
BmeT110I	CYCGRG	3 cut(s)	59, 120, 300
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	4 cut(s)	31, 536, 545, 750
BmrFI	CCNGG	2 cut(s)	475, 905
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	1 cut(s)	553
Bpu10I	CCTNAGC	1 cut(s)	919
Bpu14I	TTCGAA	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	638
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 35, 59, 65, 157, 187
Bse1I	ACTGG	4 cut(s)	287, 293, 545, 875
Bse21I	CCTNAGG	1 cut(s)	744
BseBI	CCWGG	2 cut(s)	475, 905
BseDI	CCNNGG	1 cut(s)	638
BseMII	CTCAG	4 cut(s)	333, 378, 693, 710
BseNI	ACTGG	4 cut(s)	287, 293, 545, 875
BseRI	GAGGAG	2 cut(s)	165, 655
BseXI	GCAGC	2 cut(s)	33, 101
BsgI	GTGCAG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	347, 700
BshNI	GGYRCC	1 cut(s)	748
BsiHKAI	GWGCWC	2 cut(s)	80, 823
BsiHKCI	CYCGRG	3 cut(s)	59, 120, 300
BsmAI	GTCTC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	347, 700
BsoBI	CYCGRG	3 cut(s)	59, 120, 300
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	80, 823
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	3 cut(s)	138, 188, 634
BspACI	CCGC	2 cut(s)	181, 824
BspANI	GGCC	2 cut(s)	347, 700
BspCNI	CTCAG	4 cut(s)	334, 379, 694, 711
BspLI	GGNNCC	4 cut(s)	31, 536, 545, 750
BspPI	GGATC	1 cut(s)	629
BspQI	GCTCTTC	1 cut(s)	371
BspT104I	TTCGAA	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	748
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	4 cut(s)	287, 293, 545, 875
BssECI	CCNNGG	1 cut(s)	638
BssMI	GATC	3 cut(s)	138, 188, 634
Bst2UI	CCWGG	2 cut(s)	475, 905
Bst4CI	ACNGT	2 cut(s)	224, 422
Bst6I	CTCTTC	3 cut(s)	129, 371, 684
BstAUI	TGTACA	1 cut(s)	438
BstBI	TTCGAA	1 cut(s)	95
BstDEI	CTNAG	6 cut(s)	342, 387, 702, 719, 744, 919
BstKTI	GATC	3 cut(s)	141, 191, 637
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	3 cut(s)	138, 188, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 843, 894
BstNI	CCWGG	2 cut(s)	475, 905
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	2 cut(s)	473, 903
BstV1I	GCAGC	2 cut(s)	33, 101
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
Bsu36I	CCTNAGG	1 cut(s)	744
BsuRI	GGCC	2 cut(s)	347, 700
BtsIMutI	CAGTG	3 cut(s)	276, 294, 538
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	4 cut(s)	156, 600, 604, 838
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	6 cut(s)	342, 387, 702, 719, 744, 919
DpnI	GATC	3 cut(s)	140, 190, 636
DpnII	GATC	3 cut(s)	138, 188, 634
Eam1104I	CTCTTC	3 cut(s)	129, 371, 684
EarI	CTCTTC	3 cut(s)	129, 371, 684
Eco147I	AGGCCT	2 cut(s)	347, 700
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	92, 153
Eco81I	CCTNAGG	1 cut(s)	744
Eco88I	CYCGRG	3 cut(s)	59, 120, 300
EcoRII	CCWGG	2 cut(s)	473, 903
EcoRV	GATATC	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	605
FaeI	CATG	4 cut(s)	159, 603, 607, 841
FatI	CATG	4 cut(s)	155, 599, 603, 837
FauNDI	CATATG	1 cut(s)	880
Fnu4HI	GCNGC	2 cut(s)	22, 90
Fsp4HI	GCNGC	2 cut(s)	22, 90
FspBI	CTAG	2 cut(s)	18, 335
GluI	GCNGC	2 cut(s)	22, 90
GsuI	CTGGAG	1 cut(s)	553
HaeIII	GGCC	2 cut(s)	347, 700
Hin1II	CATG	4 cut(s)	159, 603, 607, 841
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	886
HinfI	GANTC	8 cut(s)	44, 50, 62, 118, 574, 581, 617, 712
HphI	GGTGA	2 cut(s)	170, 581
Hpy166II	GTNNAC	4 cut(s)	220, 676, 810, 876
Hpy188I	TCNGA	7 cut(s)	49, 55, 67, 343, 388, 639, 720
Hpy188III	TCNNGA	5 cut(s)	234, 276, 300, 578, 623
Hpy8I	GTNNAC	4 cut(s)	220, 676, 810, 876
Hpy99I	CGWCG	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	224, 422
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	408, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 843, 894
HpyF3I	CTNAG	6 cut(s)	342, 387, 702, 719, 744, 919
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	159, 603, 607, 841
Kzo9I	GATC	3 cut(s)	138, 188, 634
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	2 cut(s)	534, 826
Lsp1109I	GCAGC	2 cut(s)	33, 101
MaeI	CTAG	2 cut(s)	18, 335
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	3 cut(s)	140, 190, 636
MboI	GATC	3 cut(s)	138, 188, 634
MboII	GAAGA	8 cut(s)	146, 291, 334, 388, 496, 701, 707, 874
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	2 cut(s)	80, 823
MluCI	AATT	5 cut(s)	665, 726, 781, 802, 829
MlyI	GAGTC	4 cut(s)	38, 44, 71, 112
MmeI	TCCRAC	2 cut(s)	72, 90
Mph1103I	ATGCAT	1 cut(s)	605
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	6 cut(s)	36, 164, 204, 444, 480, 801
MslI	CAYNNNNRTG	1 cut(s)	567
MspR9I	CCNGG	2 cut(s)	475, 905
MvaI	CCWGG	2 cut(s)	475, 905
MwoI	GCNNNNNNNGC	3 cut(s)	98, 843, 894
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	3 cut(s)	138, 188, 634
NlaIII	CATG	4 cut(s)	159, 603, 607, 841
NlaIV	GGNNCC	4 cut(s)	31, 536, 545, 750
NmuCI	GTSAC	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	605
NspI	RCATGY	1 cut(s)	607
NspV	TTCGAA	1 cut(s)	95
PaeR7I	CTCGAG	1 cut(s)	300
PceI	AGGCCT	2 cut(s)	347, 700
PciSI	GCTCTTC	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	4 cut(s)	574, 581, 617, 712
PkrI	GCNGC	2 cut(s)	23, 91
PleI	GAGTC	4 cut(s)	38, 44, 70, 112
PpsI	GAGTC	4 cut(s)	38, 44, 70, 112
PshBI	ATTAAT	1 cut(s)	801
Psp6I	CCWGG	2 cut(s)	473, 903
PspGI	CCWGG	2 cut(s)	473, 903
PspN4I	GGNNCC	4 cut(s)	31, 536, 545, 750
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	634
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	6 cut(s)	36, 164, 204, 444, 480, 801
SatI	GCNGC	2 cut(s)	22, 90
Sau3AI	GATC	3 cut(s)	138, 188, 634
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	4 cut(s)	38, 44, 71, 112
ScrFI	CCNGG	2 cut(s)	475, 905
SduI	GDGCHC	2 cut(s)	80, 823
Sfr274I	CTCGAG	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	95
SinI	GGWCC	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	5 cut(s)	665, 726, 781, 802, 829
SseBI	AGGCCT	2 cut(s)	347, 700
SsiI	CCGC	2 cut(s)	181, 824
SspI	AATATT	1 cut(s)	555
SspMI	CTAG	2 cut(s)	18, 335
StuI	AGGCCT	2 cut(s)	347, 700
StyD4I	CCNGG	2 cut(s)	473, 903
TaaI	ACNGT	2 cut(s)	224, 422
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	5 cut(s)	80, 95, 301, 579, 648
TasI	AATT	5 cut(s)	665, 726, 781, 802, 829
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	4 cut(s)	574, 581, 617, 712
Tru1I	TTAA	6 cut(s)	36, 164, 204, 444, 480, 801
Tru9I	TTAA	6 cut(s)	36, 164, 204, 444, 480, 801
TscAI	CASTG	3 cut(s)	276, 294, 545
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	2 cut(s)	21, 89
Tsp45I	GTSAC	1 cut(s)	315
TspDTI	ATGAA	4 cut(s)	725, 787, 875, 897
TspGWI	ACGGA	3 cut(s)	42, 334, 827
TspRI	CASTG	3 cut(s)	276, 294, 545
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	801
XapI	RAATTY	3 cut(s)	665, 726, 829
XceI	RCATGY	1 cut(s)	607
XhoI	CTCGAG	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	2 cut(s)	18, 335
Zsp2I	ATGCAT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.