Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Reverse (-)

57826254 .. 57830468

Gene Structure 4215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTGTTGCTTGATTCTCTTGAAATGGCAGATCCGAGGAGGCTCGAACCAAATATAAGAAAATTTGTAGTGGACATCTTTAGAGAAGAGGGTAGGCCTGAGAATAAGAATCTTCTGAGAAAAATTCCTCTTTTGATACCTAAGGTGCCACAGCAGAGAAATGATGAGGAATGTGGTAATTTTGTTCTCTACTTCATTAATTTGTTCATGGAGAGTGCTCCGCAGAATTTTAGCATGGAGGGCTACCCTTACTTTATGAAGAAAAACTGGTTTACATATGAAAGCTTGGATTGCTTCTGCCAGGAACTCTATTCCTCAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

108

Amino Acids

12.94

Weight (kDa)

5.2

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	46 - 88	9.2e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	26
AcsI	RAATTY	3 cut(s)	62, 123, 226
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw21I	GWGCWC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	1 cut(s)	95
ApoI	RAATTY	3 cut(s)	62, 123, 226
AseI	ATTAAT	1 cut(s)	198
AxyI	CCTNAGG	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	220
BbvCI	CCTCAGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	272
Bse21I	CCTNAGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	35
BseMII	CTCAG	2 cut(s)	90, 107
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	91, 108
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	4 cut(s)	99, 116, 141, 316
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 291
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	97
CviAII	CATG	2 cut(s)	208, 235
CviJI	RGCY	4 cut(s)	43, 97, 243, 285
CviKI_1	RGCY	4 cut(s)	43, 97, 243, 285
DdeI	CTNAG	4 cut(s)	99, 116, 141, 316
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	97
Eco81I	CCTNAGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	211, 238
FaiI	YATR	6 cut(s)	56, 209, 236, 257, 277, 279
FatI	CATG	2 cut(s)	207, 234
FauNDI	CATATG	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	211, 238
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	2 cut(s)	14, 109
Hpy166II	GTNNAC	2 cut(s)	73, 273
Hpy188I	TCNGA	2 cut(s)	36, 117
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	73, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 291
HpyF3I	CTNAG	4 cut(s)	99, 116, 141, 316
Hsp92II	CATG	2 cut(s)	211, 238
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	4 cut(s)	111, 253, 287, 314
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	3 cut(s)	98, 104, 271
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	5 cut(s)	62, 123, 178, 199, 226
MnlI	CCTC	7 cut(s)	30, 33, 82, 138, 160, 232, 325
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	240, 291
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	211, 238
NlaIV	GGNNCC	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	14, 109
PshBI	ATTAAT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	3 cut(s)	142, 147, 287
Sse9I	AATT	5 cut(s)	62, 123, 178, 199, 226
SseBI	AGGCCT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	221
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	300
TaqI	TCGA	1 cut(s)	45
TasI	AATT	5 cut(s)	62, 123, 178, 199, 226
TfiI	GAWTC	2 cut(s)	14, 109
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TspDTI	ATGAA	4 cut(s)	184, 196, 272, 294
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	3 cut(s)	62, 123, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.