Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Forward (+)

31800058 .. 31800351

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG152400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCATGTATTAGCAGCTTCGAAAGCTCAAAGACAGAGCTTGACTCGGGGAGAAACTGAAGAGATCAAAAAGATATCCCCATGCTTTTTAACTTTTTCTCCTCACCGCCAGAGATCAACGAGGTGTGTTAAGAGCAAGTATGTCAACCGTGAAGTGTCAAGAAAAACACAGAACCAAGACACTAAAACGTGTTCAGTGTCAAGAAGAAAACCGGTGCCAGTCTCTCGAGCTTGTAGAGTGTCACGGAAGAAACAGAAGCTAGGCTCTGAGGCCTTTGAGTGCTACTTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

97

Amino Acids

11.24

Weight (kDa)

10.35

Isoelectric Point (pI)

71.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AciI	CCGC	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	188
AgeI	ACCGGT	1 cut(s)	211
AluBI	AGCT	5 cut(s)	17, 26, 39, 230, 259
AluI	AGCT	5 cut(s)	17, 26, 39, 230, 259
Alw26I	GTCTC	1 cut(s)	226
Ama87I	CYCGRG	2 cut(s)	45, 225
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	14
AsiGI	ACCGGT	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	95
AsuII	TTCGAA	1 cut(s)	20
AvaI	CYCGRG	2 cut(s)	45, 225
BanI	GGYRCC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmeT110I	CYCGRG	2 cut(s)	45, 225
BmiI	GGNNCC	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
Bpu14I	TTCGAA	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	214
BshTI	ACCGGT	1 cut(s)	211
BsiHKCI	CYCGRG	2 cut(s)	45, 225
BsiSI	CCGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	272
BsoBI	CYCGRG	2 cut(s)	45, 225
Bsp119I	TTCGAA	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	63, 113
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	211
BssMI	GATC	2 cut(s)	63, 113
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	54
BstBI	TTCGAA	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	267
BstKTI	GATC	2 cut(s)	66, 116
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	2 cut(s)	63, 113
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	211
CviAII	CATG	2 cut(s)	5, 81
CviJI	RGCY	7 cut(s)	17, 26, 39, 230, 259, 264, 272
CviKI_1	RGCY	7 cut(s)	17, 26, 39, 230, 259, 264, 272
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	2 cut(s)	65, 115
DpnII	GATC	2 cut(s)	63, 113
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	2 cut(s)	45, 225
EcoRV	GATATC	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 84
FaiI	YATR	3 cut(s)	6, 82, 141
FatI	CATG	2 cut(s)	4, 80
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	2 cut(s)	8, 84
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	3 cut(s)	159, 201, 225
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	8, 84
Kzo9I	GATC	2 cut(s)	63, 113
LpnPI	CCDG	3 cut(s)	122, 225, 231
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	2 cut(s)	65, 115
MboI	GATC	2 cut(s)	63, 113
MboII	GAAGA	3 cut(s)	71, 216, 259
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	3 cut(s)	111, 114, 262
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	89, 129
MspI	CCGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	2 cut(s)	63, 113
NlaIII	CATG	2 cut(s)	8, 84
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	272
PinAI	ACCGGT	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	89, 129
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	63, 113
SchI	GAGTC	1 cut(s)	37
SetI	ASST	7 cut(s)	19, 28, 41, 125, 191, 232, 261
Sfr274I	CTCGAG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	20, 226
Tru1I	TTAA	2 cut(s)	89, 129
Tru9I	TTAA	2 cut(s)	89, 129
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	1 cut(s)	201
XceI	RCATGY	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	225
XspI	CTAG	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.