Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Reverse (-)

18440112 .. 18442320

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAACGGTCAAGATGGAGGAGAAGACTACTCTTGGTCTCTTTCTCTTCAGAGTCTCTGTCCAAACTCAATGGGGAGGAGAAAACCTAGCAGCGATGAACCCATTAACATAGACTCCGACTCCGAAACCGAATCTGACTTGAACTGCTCGGTTTCAGAGATTTACAATGATCAAATGTCAAAGCATCGAACATGTTGGATGCATGTGTTAGCAGCTTCGAAAGCTCAAAGACAGAGCTTGAGTCAGAGAGAAACTCAAGAGATTAAGAAGATATCCCCATGCTTTTTAACTTTTCATCCTCACCGTCAGAGATCAGTAAGGAGTTTTAAGACCAAGTATGTCAAACGTCAAGTGTTAAGAAAAAAACAGAACCAAGAATCTAAAGCGTGTGCGGTGTCAAGAAGAAAGCCAGTCTCTCGAGGTTGTAGAGTGTCACGGAAGAAACAGGAGTTAGACTCTGGAAGCTTTCAGTCCTGCTTTGAGTCCTTATGGAAGAGCTTTTCTGAGGACAAGAAGACTTATTTCACATACCTTGACTGTTTATGGTTTTCCTTGTATATAGAACCCACCACCAAAGACAAGGTGCTAACCTGGATCAAGAAGAAGCATATTTTCTCAAAGAAATATGTTTTTGTTCCTATTGTTTGCTGGTGCCACTGGAGCCTACTAATATTGTGTCATTTTGGTGAGAATCTTGAATCAAAGACCCAAAGACCATGCATGTTGTTGCTTGATTCTCTTGAAATGACAGATCCCAAGAGGCTCGAACCAAATATAAGAAGGTTTGTAGTGGACATCTTTAGAGAAGAGGGTAGGCGTGAGAATATGGATCTTTTGAGAAAAATTCCTCTTTTGGTACCTAAGGTGCCTAAGCAGAGAAATGATCAAGAATGTGGTAATTTTGTCCTCTACTTCATTAATTTGTTCATGGAGAGTGCTCCGCAGACTTTTAGCATGGAGGGGTACCCTTACTTTATGAAGAAAAACTGGTTTGCATATGAAAGCTTGGATTGCTTCTGCCAGGAAATTTATTCATCAGCAAAGGGATGTTCCCAGAACTCAATATGGGCATATCCTTTTGTAGACTGGTTTCAAGTGTCTCAATTGCCACAAACTGCACCAGGCCACCTGGGTAAACCATATCTTAGTAGATATCTTATCTTAGATCTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAACCATATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

404

Amino Acids

47.44

Weight (kDa)

9.4

Isoelectric Point (pI)

62.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	194 - 327	2.7e-13	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	856, 963
AccB1I	GGYRCC	4 cut(s)	651, 856, 865, 963
AccI	GTMKAC	1 cut(s)	1083
AciI	CCGC	2 cut(s)	392, 941
AclWI	GGATC	3 cut(s)	602, 746, 837
AcsI	RAATTY	2 cut(s)	843, 1026
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	2 cut(s)	858, 965
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	142, 698, 743, 1094
AjnI	CCWGG	4 cut(s)	590, 1020, 1120, 1128
AluBI	AGCT	6 cut(s)	215, 224, 237, 465, 498, 1005
AluI	AGCT	6 cut(s)	215, 224, 237, 465, 498, 1005
Alw21I	GWGCWC	1 cut(s)	940
Alw26I	GTCTC	4 cut(s)	42, 59, 418, 1104
AlwI	GGATC	3 cut(s)	602, 746, 837
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	1 cut(s)	1123
ApeKI	GCWGC	2 cut(s)	90, 212
ApoI	RAATTY	2 cut(s)	843, 1026
AseI	ATTAAT	1 cut(s)	918
Asp718I	GGTACC	2 cut(s)	856, 963
AsuHPI	GGTGA	2 cut(s)	293, 698
AsuII	TTCGAA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	417
AxyI	CCTNAGG	1 cut(s)	861
BanI	GGYRCC	4 cut(s)	651, 856, 865, 963
BbsI	GAAGAC	2 cut(s)	30, 521
Bbv12I	GWGCWC	1 cut(s)	940
BbvI	GCAGC	2 cut(s)	102, 224
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	4 cut(s)	592, 1022, 1122, 1130
BclI	TGATCA	2 cut(s)	169, 883
BcoDI	GTCTC	4 cut(s)	42, 59, 418, 1104
BfaI	CTAG	1 cut(s)	87
BglII	AGATCT	1 cut(s)	1165
BisI	GCNGC	2 cut(s)	91, 213
BlsI	GCNGC	2 cut(s)	92, 214
Bme1390I	CCNGG	4 cut(s)	592, 1022, 1122, 1130
BmeT110I	CYCGRG	1 cut(s)	417
BmiI	GGNNCC	5 cut(s)	653, 662, 858, 867, 965
BmrFI	CCNGG	4 cut(s)	592, 1022, 1122, 1130
BmsI	GCATC	2 cut(s)	189, 193
BpiI	GAAGAC	2 cut(s)	30, 521
BplI	GAGNNNNNCTC	4 cut(s)	238, 270, 440, 472
BpmI	CTGGAG	1 cut(s)	679
Bpu10I	CCTNAGC	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	2 cut(s)	240, 259
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	1129
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 104, 128, 134
Bse1I	ACTGG	4 cut(s)	410, 662, 992, 1091
Bse21I	CCTNAGG	1 cut(s)	861
BseBI	CCWGG	4 cut(s)	592, 1022, 1122, 1130
BseDI	CCNNGG	1 cut(s)	1129
BseGI	GGATG	3 cut(s)	204, 295, 1052
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	4 cut(s)	410, 662, 992, 1091
BseRI	GAGGAG	2 cut(s)	33, 91
BseXI	GCAGC	2 cut(s)	102, 224
BsgI	GTGCAG	1 cut(s)	1101
BshFI	GGCC	1 cut(s)	1125
BshNI	GGYRCC	4 cut(s)	651, 856, 865, 963
BsiHKAI	GWGCWC	1 cut(s)	940
BsiHKCI	CYCGRG	1 cut(s)	417
BsmAI	GTCTC	4 cut(s)	42, 59, 418, 1104
BsnI	GGCC	1 cut(s)	1125
Bso31I	GGTCTC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	417
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	940
Bsp143I	GATC	7 cut(s)	169, 311, 594, 751, 829, 883, 1165
BspACI	CCGC	2 cut(s)	392, 941
BspANI	GGCC	1 cut(s)	1125
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	5 cut(s)	653, 662, 858, 867, 965
BspPI	GGATC	3 cut(s)	602, 746, 837
BspQI	GCTCTTC	1 cut(s)	488
BspT104I	TTCGAA	1 cut(s)	218
BspT107I	GGYRCC	4 cut(s)	651, 856, 865, 963
BspTNI	GGTCTC	1 cut(s)	42
BsrI	ACTGG	4 cut(s)	410, 662, 992, 1091
BssECI	CCNNGG	1 cut(s)	1129
BssMI	GATC	7 cut(s)	169, 311, 594, 751, 829, 883, 1165
Bst2UI	CCWGG	4 cut(s)	592, 1022, 1122, 1130
Bst4CI	ACNGT	3 cut(s)	8, 305, 539
Bst6I	CTCTTC	3 cut(s)	51, 488, 801
BstBI	TTCGAA	1 cut(s)	218
BstDEI	CTNAG	6 cut(s)	504, 861, 870, 1145, 1162, 1209
BstF5I	GGATG	3 cut(s)	204, 295, 1052
BstKTI	GATC	7 cut(s)	172, 314, 597, 754, 832, 886, 1168
BstMAI	GTCTC	4 cut(s)	42, 59, 418, 1104
BstMBI	GATC	7 cut(s)	169, 311, 594, 751, 829, 883, 1165
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 660, 1011
BstNI	CCWGG	4 cut(s)	592, 1022, 1122, 1130
BstNSI	RCATGY	3 cut(s)	195, 206, 724
BstSCI	CCNGG	4 cut(s)	590, 1020, 1120, 1128
BstV1I	GCAGC	2 cut(s)	102, 224
BstV2I	GAAGAC	2 cut(s)	30, 521
BstX2I	RGATCY	3 cut(s)	751, 829, 1165
BstYI	RGATCY	3 cut(s)	751, 829, 1165
Bsu36I	CCTNAGG	1 cut(s)	861
BsuRI	GGCC	1 cut(s)	1125
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	204, 295, 1052
BtsIMutI	CAGTG	1 cut(s)	655
Csp6I	GTAC	2 cut(s)	857, 964
CviAII	CATG	7 cut(s)	192, 203, 279, 717, 721, 928, 955
CviQI	GTAC	2 cut(s)	857, 964
DdeI	CTNAG	6 cut(s)	504, 861, 870, 1145, 1162, 1209
DpnI	GATC	7 cut(s)	171, 313, 596, 753, 831, 885, 1167
DpnII	GATC	7 cut(s)	169, 311, 594, 751, 829, 883, 1165
Eam1104I	CTCTTC	3 cut(s)	51, 488, 801
EarI	CTCTTC	3 cut(s)	51, 488, 801
Eco31I	GGTCTC	1 cut(s)	42
Eco32I	GATATC	2 cut(s)	273, 1154
Eco57I	CTGAAG	1 cut(s)	32
Eco81I	CCTNAGG	1 cut(s)	861
Eco88I	CYCGRG	1 cut(s)	417
EcoRII	CCWGG	4 cut(s)	590, 1020, 1120, 1128
EcoRV	GATATC	2 cut(s)	273, 1154
EcoT22I	ATGCAT	2 cut(s)	204, 722
FaeI	CATG	7 cut(s)	195, 206, 282, 720, 724, 931, 958
FatI	CATG	7 cut(s)	191, 202, 278, 716, 720, 927, 954
FauNDI	CATATG	1 cut(s)	997
FbaI	TGATCA	2 cut(s)	169, 883
FblI	GTMKAC	1 cut(s)	1083
Fnu4HI	GCNGC	2 cut(s)	91, 213
FokI	GGATG	3 cut(s)	211, 282, 1059
Fsp4HI	GCNGC	2 cut(s)	91, 213
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	2 cut(s)	91, 213
GsuI	CTGGAG	1 cut(s)	679
HaeIII	GGCC	1 cut(s)	1125
Hin1II	CATG	7 cut(s)	195, 206, 282, 720, 724, 931, 958
HindIII	AAGCTT	2 cut(s)	463, 1003
HphI	GGTGA	2 cut(s)	293, 698
Hpy166II	GTNNAC	3 cut(s)	793, 1084, 1136
Hpy188I	TCNGA	8 cut(s)	51, 118, 124, 136, 157, 246, 309, 505
Hpy188III	TCNNGA	9 cut(s)	11, 257, 399, 417, 459, 598, 695, 740, 887
Hpy8I	GTNNAC	3 cut(s)	793, 1084, 1136
HpyAV	CCTTC	1 cut(s)	774
HpyCH4III	ACNGT	3 cut(s)	8, 305, 539
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	202, 720, 995, 1118
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 660, 1011
HpyF3I	CTNAG	6 cut(s)	504, 861, 870, 1145, 1162, 1209
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	7 cut(s)	195, 206, 282, 720, 724, 931, 958
KpnI	GGTACC	2 cut(s)	860, 967
Ksp22I	TGATCA	2 cut(s)	169, 883
Kzo9I	GATC	7 cut(s)	169, 311, 594, 751, 829, 883, 1165
LguI	GCTCTTC	1 cut(s)	488
LmnI	GCTCC	2 cut(s)	660, 943
Lsp1109I	GCAGC	2 cut(s)	102, 224
LweI	GCATC	2 cut(s)	189, 193
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	7 cut(s)	171, 313, 596, 753, 831, 885, 1167
MboI	GATC	7 cut(s)	169, 311, 594, 751, 829, 883, 1165
MfeI	CAATTG	1 cut(s)	1103
MflI	RGATCY	3 cut(s)	751, 829, 1165
MhlI	GDGCHC	1 cut(s)	940
MluCI	AATT	5 cut(s)	843, 898, 919, 1026, 1103
MlyI	GAGTC	6 cut(s)	61, 107, 113, 250, 449, 491
MmeI	TCCRAC	2 cut(s)	141, 176
Mph1103I	ATGCAT	2 cut(s)	204, 722
MseI	TTAA	6 cut(s)	105, 264, 287, 327, 356, 918
MslI	CAYNNNNRTG	1 cut(s)	684
MspR9I	CCNGG	4 cut(s)	592, 1022, 1122, 1130
MunI	CAATTG	1 cut(s)	1103
MvaI	CCWGG	4 cut(s)	592, 1022, 1122, 1130
MwoI	GCNNNNNNNGC	3 cut(s)	221, 660, 1011
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	7 cut(s)	169, 311, 594, 751, 829, 883, 1165
NlaIII	CATG	7 cut(s)	195, 206, 282, 720, 724, 931, 958
NlaIV	GGNNCC	5 cut(s)	653, 662, 858, 867, 965
NmuCI	GTSAC	1 cut(s)	432
NsiI	ATGCAT	2 cut(s)	204, 722
NspI	RCATGY	3 cut(s)	195, 206, 724
NspV	TTCGAA	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	417
PciI	ACATGT	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	488
PfeI	GAWTC	5 cut(s)	131, 377, 691, 698, 734
PkrI	GCNGC	2 cut(s)	92, 214
PleI	GAGTC	6 cut(s)	60, 107, 113, 249, 449, 490
PpsI	GAGTC	6 cut(s)	60, 107, 113, 249, 449, 490
PscI	ACATGT	1 cut(s)	191
PshBI	ATTAAT	1 cut(s)	918
Psp6I	CCWGG	4 cut(s)	590, 1020, 1120, 1128
PspGI	CCWGG	4 cut(s)	590, 1020, 1120, 1128
PspN4I	GGNNCC	5 cut(s)	653, 662, 858, 867, 965
PsuI	RGATCY	3 cut(s)	751, 829, 1165
RsaI	GTAC	2 cut(s)	858, 965
RsaNI	GTAC	2 cut(s)	857, 964
RseI	CAYNNNNRTG	1 cut(s)	684
SapI	GCTCTTC	1 cut(s)	488
SaqAI	TTAA	6 cut(s)	105, 264, 287, 327, 356, 918
SatI	GCNGC	2 cut(s)	91, 213
Sau3AI	GATC	7 cut(s)	169, 311, 594, 751, 829, 883, 1165
SchI	GAGTC	6 cut(s)	61, 107, 113, 250, 449, 491
ScrFI	CCNGG	4 cut(s)	592, 1022, 1122, 1130
SduI	GDGCHC	1 cut(s)	940
SfaNI	GCATC	2 cut(s)	189, 193
Sfr274I	CTCGAG	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	3 cut(s)	238, 255, 417
SmoI	CTYRAG	3 cut(s)	238, 255, 417
Sse9I	AATT	5 cut(s)	843, 898, 919, 1026, 1103
SsiI	CCGC	2 cut(s)	392, 941
SspI	AATATT	1 cut(s)	672
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	4 cut(s)	590, 1020, 1120, 1128
TaaI	ACNGT	3 cut(s)	8, 305, 539
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	4 cut(s)	187, 218, 418, 765
TasI	AATT	5 cut(s)	843, 898, 919, 1026, 1103
TfiI	GAWTC	5 cut(s)	131, 377, 691, 698, 734
Tru1I	TTAA	6 cut(s)	105, 264, 287, 327, 356, 918
Tru9I	TTAA	6 cut(s)	105, 264, 287, 327, 356, 918
TscAI	CASTG	1 cut(s)	662
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	2 cut(s)	90, 212
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	8 cut(s)	17, 111, 284, 904, 916, 992, 1014, 1023
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	1 cut(s)	662
VspI	ATTAAT	1 cut(s)	918
XapI	RAATTY	2 cut(s)	843, 1026
XceI	RCATGY	3 cut(s)	195, 206, 724
XhoI	CTCGAG	1 cut(s)	417
XmiI	GTMKAC	1 cut(s)	1083
XspI	CTAG	1 cut(s)	87
Zsp2I	ATGCAT	2 cut(s)	204, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.