Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Reverse (-)

59682024 .. 59684020

Gene Structure 1997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGAAGGAGAAAACCTAGCAGCGATGGACCCATTAACATAGACTCCGACTCCGAACCCGAGTCCGACCTGAAGTGCTCGATTTCAGAGATTTACAATGATCAACTGTCAAAGCATCGAACATGTTGGATGCATGTATTAGCAGCTTCGAAAGCTCAAAGACAGAGCTTGACTCGGGGAGAAACTGAAGAGATCAAGAAGATATCCCCATGCTTTTTAACTTTTTCTCCTCACCGCCAGAGATCAACGAGGAGTGTTAAGAGAAAGTATGTCAACCGTGAAGTGTCAAGAAAAACACAGAACCAAGACTCTAAAATGTGTTCAGTGTCAAGAAGAAAACCAGTGCCAGTCTCTCGAGCTTGTAGAGTGTCACGGAAGAAACAGAAGCTAGGCACTGAGGCCTTTGAGTGCTACTTTGAGAACTTATGGAAGAACTTCTCTGAGGACAAGAAAACTTCCTTCACATACCTTGACTGTTTATGGTTTTCCTTGTACATTAAACCAACCACCACAGACAAGGTGCTAACCTGGATTAAGAAGAAGCATATTTTTTCAAAGAAATATGTTTTTGTTCCTATTGTGTGCTGGAGCCACTGGAACCTTCTAATATTGTGTCATTTTGGTGAGAATCTCGAATCAAAGACCCAACGACCATGCATGTTGTTGCTTGATTCTCTTGAAATGGCAGATCCGAGGAGACTCGAACCAAATATAAGAAAATTTGTAGTGGACATCTTTAGAGAAGAGGGTAGGCCTGAGAATATGAATCTTCTGAGAAAAATTCCTCTTTTGATACCTAAGGTGCCACAGCAGAGAAATGATGAGGAATGTGGTAATTTTGTTCTCTACTTCATTAATTTGTTCATTGAGAGTGCTCCGCAGAATTTTAGCATGGAGGGCTACCCTTACTTTATGAAGAAAAACTGGTTTACATATGAAAGCTTGGATTGCTTCTGCCAGGAGCTCTATTTCTCAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

328

Amino Acids

38.74

Weight (kDa)

9.32

Isoelectric Point (pI)

61.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	172 - 306	2.1e-11	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	802
AciI	CCGC	2 cut(s)	235, 878
AclWI	GGATC	1 cut(s)	683
AcsI	RAATTY	3 cut(s)	719, 780, 883
AcuI	CTGAAG	2 cut(s)	92, 207
AfaI	GTAC	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	555, 680
AjnI	CCWGG	2 cut(s)	527, 957
AluBI	AGCT	7 cut(s)	146, 155, 168, 359, 388, 942, 964
AluI	AGCT	7 cut(s)	146, 155, 168, 359, 388, 942, 964
Alw21I	GWGCWC	3 cut(s)	80, 877, 966
Alw26I	GTCTC	2 cut(s)	355, 691
AlwI	GGATC	1 cut(s)	683
Ama87I	CYCGRG	3 cut(s)	59, 174, 354
AoxI	GGCC	2 cut(s)	399, 752
ApeKI	GCWGC	2 cut(s)	21, 143
ApoI	RAATTY	3 cut(s)	719, 780, 883
AseI	ATTAAT	1 cut(s)	855
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	224, 635
AsuII	TTCGAA	1 cut(s)	149
AvaI	CYCGRG	3 cut(s)	59, 174, 354
AvaII	GGWCC	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	798
BanI	GGYRCC	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	966
Bbv12I	GWGCWC	3 cut(s)	80, 877, 966
BbvI	GCAGC	2 cut(s)	33, 155
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	2 cut(s)	529, 959
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	355, 691
BfaI	CTAG	2 cut(s)	18, 389
BisI	GCNGC	2 cut(s)	22, 144
BlsI	GCNGC	2 cut(s)	23, 145
Bme1390I	CCNGG	2 cut(s)	529, 959
Bme18I	GGWCC	1 cut(s)	29
BmeT110I	CYCGRG	3 cut(s)	59, 174, 354
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	4 cut(s)	31, 590, 599, 804
BmrFI	CCNGG	2 cut(s)	529, 959
BmsI	GCATC	2 cut(s)	120, 124
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	1 cut(s)	607
Bpu14I	TTCGAA	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	692
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 35, 59, 65, 211, 241
Bse1I	ACTGG	4 cut(s)	341, 347, 599, 929
Bse21I	CCTNAGG	1 cut(s)	798
BseBI	CCWGG	2 cut(s)	529, 959
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	1 cut(s)	135
BseMII	CTCAG	4 cut(s)	387, 432, 747, 764
BseNI	ACTGG	4 cut(s)	341, 347, 599, 929
BseRI	GAGGAG	3 cut(s)	219, 265, 709
BseXI	GCAGC	2 cut(s)	33, 155
BshFI	GGCC	2 cut(s)	401, 754
BshNI	GGYRCC	1 cut(s)	802
BsiHKAI	GWGCWC	3 cut(s)	80, 877, 966
BsiHKCI	CYCGRG	3 cut(s)	59, 174, 354
BsmAI	GTCTC	2 cut(s)	355, 691
BsnI	GGCC	2 cut(s)	401, 754
BsoBI	CYCGRG	3 cut(s)	59, 174, 354
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	3 cut(s)	80, 877, 966
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	100, 192, 242, 688
BspACI	CCGC	2 cut(s)	235, 878
BspANI	GGCC	2 cut(s)	401, 754
BspCNI	CTCAG	4 cut(s)	388, 433, 748, 765
BspLI	GGNNCC	4 cut(s)	31, 590, 599, 804
BspPI	GGATC	1 cut(s)	683
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	802
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	4 cut(s)	341, 347, 599, 929
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	4 cut(s)	100, 192, 242, 688
Bst2UI	CCWGG	2 cut(s)	529, 959
Bst4CI	ACNGT	3 cut(s)	108, 278, 476
Bst6I	CTCTTC	2 cut(s)	183, 738
BstAUI	TGTACA	1 cut(s)	492
BstBI	TTCGAA	1 cut(s)	149
BstDEI	CTNAG	6 cut(s)	396, 441, 756, 773, 798, 973
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	4 cut(s)	103, 195, 245, 691
BstMAI	GTCTC	2 cut(s)	355, 691
BstMBI	GATC	4 cut(s)	100, 192, 242, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 897, 948
BstNI	CCWGG	2 cut(s)	529, 959
BstNSI	RCATGY	3 cut(s)	126, 137, 661
BstSCI	CCNGG	2 cut(s)	527, 957
BstV1I	GCAGC	2 cut(s)	33, 155
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
Bsu36I	CCTNAGG	1 cut(s)	798
BsuRI	GGCC	2 cut(s)	401, 754
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	4 cut(s)	330, 348, 393, 592
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	6 cut(s)	123, 134, 210, 654, 658, 892
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	6 cut(s)	396, 441, 756, 773, 798, 973
DpnI	GATC	4 cut(s)	102, 194, 244, 690
DpnII	GATC	4 cut(s)	100, 192, 242, 688
Eam1104I	CTCTTC	2 cut(s)	183, 738
EarI	CTCTTC	2 cut(s)	183, 738
Ecl136II	GAGCTC	1 cut(s)	964
Eco147I	AGGCCT	2 cut(s)	401, 754
Eco24I	GRGCYC	1 cut(s)	966
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	964
Eco57I	CTGAAG	2 cut(s)	92, 207
Eco81I	CCTNAGG	1 cut(s)	798
Eco88I	CYCGRG	3 cut(s)	59, 174, 354
EcoICRI	GAGCTC	1 cut(s)	964
EcoRII	CCWGG	2 cut(s)	527, 957
EcoRV	GATATC	1 cut(s)	204
EcoT22I	ATGCAT	2 cut(s)	135, 659
EcoT38I	GRGCYC	1 cut(s)	966
FaeI	CATG	6 cut(s)	126, 137, 213, 657, 661, 895
FatI	CATG	6 cut(s)	122, 133, 209, 653, 657, 891
FauNDI	CATATG	1 cut(s)	934
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	22, 144
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	966
Fsp4HI	GCNGC	2 cut(s)	22, 144
FspBI	CTAG	2 cut(s)	18, 389
GluI	GCNGC	2 cut(s)	22, 144
GsuI	CTGGAG	1 cut(s)	607
HaeIII	GGCC	2 cut(s)	401, 754
Hin1II	CATG	6 cut(s)	126, 137, 213, 657, 661, 895
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	940
HphI	GGTGA	2 cut(s)	224, 635
Hpy166II	GTNNAC	3 cut(s)	274, 730, 930
Hpy188I	TCNGA	7 cut(s)	49, 55, 67, 88, 442, 693, 774
Hpy188III	TCNNGA	6 cut(s)	196, 288, 330, 354, 632, 677
Hpy8I	GTNNAC	3 cut(s)	274, 730, 930
HpyAV	CCTTC	2 cut(s)	469, 611
HpyCH4III	ACNGT	3 cut(s)	108, 278, 476
HpyCH4V	TGCA	2 cut(s)	133, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 897, 948
HpyF3I	CTNAG	6 cut(s)	396, 441, 756, 773, 798, 973
Hsp92II	CATG	6 cut(s)	126, 137, 213, 657, 661, 895
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	100, 192, 242, 688
LmnI	GCTCC	3 cut(s)	588, 880, 961
Lsp1109I	GCAGC	2 cut(s)	33, 155
LweI	GCATC	2 cut(s)	120, 124
MaeI	CTAG	2 cut(s)	18, 389
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	4 cut(s)	102, 194, 244, 690
MboI	GATC	4 cut(s)	100, 192, 242, 688
MboII	GAAGA	9 cut(s)	200, 211, 345, 388, 442, 550, 755, 761, 928
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	3 cut(s)	80, 877, 966
MluCI	AATT	5 cut(s)	719, 780, 835, 856, 883
MlyI	GAGTC	6 cut(s)	38, 44, 71, 166, 302, 693
MmeI	TCCRAC	3 cut(s)	72, 90, 107
MnlI	CCTC	9 cut(s)	240, 243, 391, 436, 687, 739, 795, 817, 889
Mph1103I	ATGCAT	2 cut(s)	135, 659
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	6 cut(s)	36, 218, 258, 498, 534, 855
MslI	CAYNNNNRTG	1 cut(s)	621
MspR9I	CCNGG	2 cut(s)	529, 959
MvaI	CCWGG	2 cut(s)	529, 959
MwoI	GCNNNNNNNGC	3 cut(s)	152, 897, 948
NdeI	CATATG	1 cut(s)	934
NdeII	GATC	4 cut(s)	100, 192, 242, 688
NlaIII	CATG	6 cut(s)	126, 137, 213, 657, 661, 895
NlaIV	GGNNCC	4 cut(s)	31, 590, 599, 804
NmuCI	GTSAC	1 cut(s)	369
NsiI	ATGCAT	2 cut(s)	135, 659
NspI	RCATGY	3 cut(s)	126, 137, 661
NspV	TTCGAA	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	354
PceI	AGGCCT	2 cut(s)	401, 754
PciI	ACATGT	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	4 cut(s)	628, 635, 671, 766
PkrI	GCNGC	2 cut(s)	23, 145
PleI	GAGTC	6 cut(s)	38, 44, 70, 166, 302, 693
PpsI	GAGTC	6 cut(s)	38, 44, 70, 166, 302, 693
PscI	ACATGT	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	855
Psp124BI	GAGCTC	1 cut(s)	966
Psp6I	CCWGG	2 cut(s)	527, 957
PspGI	CCWGG	2 cut(s)	527, 957
PspN4I	GGNNCC	4 cut(s)	31, 590, 599, 804
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	621
SacI	GAGCTC	1 cut(s)	966
SaqAI	TTAA	6 cut(s)	36, 218, 258, 498, 534, 855
SatI	GCNGC	2 cut(s)	22, 144
Sau3AI	GATC	4 cut(s)	100, 192, 242, 688
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	6 cut(s)	38, 44, 71, 166, 302, 693
ScrFI	CCNGG	2 cut(s)	529, 959
SduI	GDGCHC	3 cut(s)	80, 877, 966
SfaNI	GCATC	2 cut(s)	120, 124
Sfr274I	CTCGAG	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	5 cut(s)	719, 780, 835, 856, 883
SseBI	AGGCCT	2 cut(s)	401, 754
SsiI	CCGC	2 cut(s)	235, 878
SspI	AATATT	1 cut(s)	609
SspMI	CTAG	2 cut(s)	18, 389
SstI	GAGCTC	1 cut(s)	966
StuI	AGGCCT	2 cut(s)	401, 754
StyD4I	CCNGG	2 cut(s)	527, 957
TaaI	ACNGT	3 cut(s)	108, 278, 476
TaqI	TCGA	6 cut(s)	80, 118, 149, 355, 633, 702
TasI	AATT	5 cut(s)	719, 780, 835, 856, 883
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	4 cut(s)	628, 635, 671, 766
Tru1I	TTAA	6 cut(s)	36, 218, 258, 498, 534, 855
Tru9I	TTAA	6 cut(s)	36, 218, 258, 498, 534, 855
TscAI	CASTG	4 cut(s)	330, 348, 400, 599
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	2 cut(s)	21, 143
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	5 cut(s)	779, 841, 853, 929, 951
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	4 cut(s)	330, 348, 400, 599
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	855
XapI	RAATTY	3 cut(s)	719, 780, 883
XceI	RCATGY	3 cut(s)	126, 137, 661
XhoI	CTCGAG	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	2 cut(s)	18, 389
Zsp2I	ATGCAT	2 cut(s)	135, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.