Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8255195.1

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 596

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8255195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 344 bp

agacccaaagaccatgcatgttgttgcttgattctcttgaaatggcagatccgaggaggctcgaaccaaatataagaaaatttgtagtggacatctttagagaagagggtaggcctgagaatatgaatcttctgagaaaaattcctcttttgatacctaaggtgccacagcagagaaatgatgaggaatgtggtaattttgttctctacttcattaatttgttcacggagagtgctccgcagaattttagcatggagggctacccttactttatgaagaaaaactggtttacatatgaaagcttggattgcttctgccaggaactctattcctcagcaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

113

Amino Acids

13.5

Weight (kDa)

5.2

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	3 cut(s)	79, 140, 243
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	112
ApoI	RAATTY	3 cut(s)	79, 140, 243
AseI	ATTAAT	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	107, 124
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	108, 125
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	98
BstDEI	CTNAG	4 cut(s)	116, 133, 158, 333
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 308
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	114
CviAII	CATG	3 cut(s)	14, 18, 252
CviJI	RGCY	4 cut(s)	60, 114, 260, 302
CviKI_1	RGCY	4 cut(s)	60, 114, 260, 302
DdeI	CTNAG	4 cut(s)	116, 133, 158, 333
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	114
Eco81I	CCTNAGG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	19
FaeI	CATG	3 cut(s)	17, 21, 255
FaiI	YATR	8 cut(s)	15, 19, 73, 124, 253, 274, 294, 296
FatI	CATG	3 cut(s)	13, 17, 251
FauNDI	CATATG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	17, 21, 255
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	2 cut(s)	31, 126
Hpy166II	GTNNAC	3 cut(s)	90, 224, 290
Hpy188I	TCNGA	2 cut(s)	53, 134
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	3 cut(s)	90, 224, 290
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 308
HpyF3I	CTNAG	4 cut(s)	116, 133, 158, 333
Hsp92II	CATG	3 cut(s)	17, 21, 255
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	4 cut(s)	128, 270, 304, 331
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	3 cut(s)	115, 121, 288
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	5 cut(s)	79, 140, 195, 216, 243
MnlI	CCTC	7 cut(s)	47, 50, 99, 155, 177, 249, 342
Mph1103I	ATGCAT	1 cut(s)	19
MseI	TTAA	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	257, 308
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	3 cut(s)	17, 21, 255
NlaIV	GGNNCC	1 cut(s)	164
NsiI	ATGCAT	1 cut(s)	19
NspI	RCATGY	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	31, 126
PshBI	ATTAAT	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	215
Sau3AI	GATC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	3 cut(s)	159, 164, 304
Sse9I	AATT	5 cut(s)	79, 140, 195, 216, 243
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	238
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	317
TaqI	TCGA	1 cut(s)	62
TasI	AATT	5 cut(s)	79, 140, 195, 216, 243
TfiI	GAWTC	2 cut(s)	31, 126
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TspDTI	ATGAA	4 cut(s)	139, 201, 289, 311
TspGWI	ACGGA	1 cut(s)	241
VspI	ATTAAT	1 cut(s)	215
XapI	RAATTY	3 cut(s)	79, 140, 243
XceI	RCATGY	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.