Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Reverse (-)

4392888 .. 4395023

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGGAGGAGAAAACCTAGCAGCGATGGACCCATTAACATCGACTCCGACTCGAAACCCGAACCCGAATCCGACTTGAAATGCTCGGTTTCAGGGATTTACAATATTGATGAAATGTCAAAGCATCGAACATGTTGGATGCATGTGTTAGCATTTTCGAAAGCTCAAAGACAGAGCTTGGGTTTGAGAGAAACTGAAGAGATTAAGAAGATATCCCCATGCTTTTTAACTTCATGTCCTCATCGCCGGAGATCAGTGAGGAGTTTTAAAACAAAGTATGTCAACCTTGAAGTATCAAGAAAGACGCAGAACCAAGAATCTAAAGCGTGTGCTGTATCAAGAAGAAAACCAGTGCTAGTCTCTCGAGGTTGTAGAGTGTCAAGGAGAAAACAGGAGCTAGACTCTGGAACCTTTCAGTGCTACTTTGAGTCCTTATGGAAGAGCTTTTCTGAGGACAAGAAGACTTCTTTCACATACCTTGACTGCATATGGTTTTCCTTGTATATAAAACCAACCACCAAAGACAAGGTGCTAACCTGGATTAAGAAGAAGCATATTTTCTCAAAGAAATATGTTTTTGTTCCTATTGTTTGCTGGAGCCACTGGAACCTACTAATATTGTGTCATTTTGGTGAGAATCTTGAATCGAAGACCCAAAGACCATGCATGCTGTTGCTTGATTCTCTTGAAATGGCAGATCCCAGGAGGCTGGAACCAGATATAAGAAAATTTGTAGTGGACATCTTTAGAGAAGAGGGTAGGCCTGAGAATATGGATCTTTTGAGAAAAATTCCTCTTTTGGTACCTAAGGTGCCTCAGCAGAGAAATGATCAAGAATGTGGCAATTTTGTTCTCTACTTCATTAATTTGTTTATGGAGAGTGCTCCGCAGACTTTTAGCATGGAGGAGTACCCTTACTTTATGAAGAAAAACTGGTTTGCATATGAAAGCTTGGATTGCTTCTGCCAGGACATCTATTCATCAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

331

Amino Acids

38.93

Weight (kDa)

9.18

Isoelectric Point (pI)

63.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	176 - 310	6.4e-12	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	802
AccB1I	GGYRCC	2 cut(s)	802, 811
AciI	CCGC	1 cut(s)	887
AclWI	GGATC	2 cut(s)	692, 783
AcsI	RAATTY	2 cut(s)	728, 789
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	804, 911
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	79, 290, 644, 689
AjnI	CCWGG	3 cut(s)	536, 701, 966
AluBI	AGCT	5 cut(s)	164, 177, 397, 444, 951
AluI	AGCT	5 cut(s)	164, 177, 397, 444, 951
Alw21I	GWGCWC	1 cut(s)	886
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	692, 783
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	1 cut(s)	761
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	2 cut(s)	728, 789
AseI	ATTAAT	1 cut(s)	864
Asp718I	GGTACC	1 cut(s)	802
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	644
AsuII	TTCGAA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	807
BanI	GGYRCC	2 cut(s)	802, 811
BbsI	GAAGAC	2 cut(s)	467, 656
Bbv12I	GWGCWC	1 cut(s)	886
BbvCI	CCTCAGC	1 cut(s)	816
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	3 cut(s)	538, 703, 968
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	3 cut(s)	18, 356, 398
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	3 cut(s)	538, 703, 968
Bme18I	GGWCC	1 cut(s)	29
BmeT110I	CYCGRG	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	7 cut(s)	31, 409, 599, 608, 714, 804, 813
BmrFI	CCNGG	3 cut(s)	538, 703, 968
BmsI	GCATC	2 cut(s)	129, 133
BpiI	GAAGAC	2 cut(s)	467, 656
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	1 cut(s)	616
Bpu10I	CCTNAGC	1 cut(s)	816
Bpu14I	TTCGAA	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	701
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse1I	ACTGG	3 cut(s)	350, 608, 938
Bse21I	CCTNAGG	1 cut(s)	807
BseBI	CCWGG	3 cut(s)	538, 703, 968
BseDI	CCNNGG	1 cut(s)	701
BseGI	GGATG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	441, 756, 830
BseNI	ACTGG	3 cut(s)	350, 608, 938
BseRI	GAGGAG	3 cut(s)	22, 274, 920
BseXI	GCAGC	1 cut(s)	33
BshFI	GGCC	1 cut(s)	763
BshNI	GGYRCC	2 cut(s)	802, 811
BsiHKAI	GWGCWC	1 cut(s)	886
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	763
BsoBI	CYCGRG	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	886
Bsp143I	GATC	4 cut(s)	251, 697, 775, 829
BspACI	CCGC	1 cut(s)	887
BspANI	GGCC	1 cut(s)	763
BspCNI	CTCAG	3 cut(s)	442, 757, 829
BspLI	GGNNCC	7 cut(s)	31, 409, 599, 608, 714, 804, 813
BspPI	GGATC	2 cut(s)	692, 783
BspQI	GCTCTTC	1 cut(s)	434
BspT104I	TTCGAA	1 cut(s)	158
BspT107I	GGYRCC	2 cut(s)	802, 811
BsrI	ACTGG	3 cut(s)	350, 608, 938
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	4 cut(s)	251, 697, 775, 829
Bst2UI	CCWGG	3 cut(s)	538, 703, 968
Bst6I	CTCTTC	3 cut(s)	192, 434, 747
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	4 cut(s)	450, 765, 807, 816
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	4 cut(s)	254, 700, 778, 832
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	4 cut(s)	251, 697, 775, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	957
BstNI	CCWGG	3 cut(s)	538, 703, 968
BstNSI	RCATGY	3 cut(s)	135, 146, 670
BstSCI	CCNGG	3 cut(s)	536, 701, 966
BstV1I	GCAGC	1 cut(s)	33
BstV2I	GAAGAC	2 cut(s)	467, 656
BstX2I	RGATCY	2 cut(s)	697, 775
BstXI	CCANNNNNNTGG	1 cut(s)	709
BstYI	RGATCY	2 cut(s)	697, 775
Bsu36I	CCTNAGG	1 cut(s)	807
BsuRI	GGCC	1 cut(s)	763
BtgZI	GCGATG	2 cut(s)	39, 227
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	4 cut(s)	261, 357, 422, 601
Cac8I	GCNNGC	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	29
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	803, 910
CviAII	CATG	7 cut(s)	132, 143, 219, 234, 663, 667, 901
CviJI	RGCY	8 cut(s)	164, 177, 397, 444, 600, 709, 763, 951
CviKI_1	RGCY	8 cut(s)	164, 177, 397, 444, 600, 709, 763, 951
CviQI	GTAC	2 cut(s)	803, 910
DdeI	CTNAG	4 cut(s)	450, 765, 807, 816
DpnI	GATC	4 cut(s)	253, 699, 777, 831
DpnII	GATC	4 cut(s)	251, 697, 775, 829
DraI	TTTAAA	1 cut(s)	268
Eam1104I	CTCTTC	3 cut(s)	192, 434, 747
EarI	CTCTTC	3 cut(s)	192, 434, 747
Eco147I	AGGCCT	1 cut(s)	763
Eco32I	GATATC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	216
Eco81I	CCTNAGG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	363
EcoRII	CCWGG	3 cut(s)	536, 701, 966
EcoRV	GATATC	1 cut(s)	213
EcoT22I	ATGCAT	2 cut(s)	144, 668
FaeI	CATG	7 cut(s)	135, 146, 222, 237, 666, 670, 904
FatI	CATG	7 cut(s)	131, 142, 218, 233, 662, 666, 900
FauNDI	CATATG	2 cut(s)	488, 943
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	3 cut(s)	18, 356, 398
GluI	GCNGC	1 cut(s)	22
GsuI	CTGGAG	1 cut(s)	616
HaeIII	GGCC	1 cut(s)	763
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	313
Hin1II	CATG	7 cut(s)	135, 146, 222, 237, 666, 670, 904
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	949
HinfI	GANTC	9 cut(s)	44, 50, 68, 317, 401, 428, 637, 644, 680
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	2 cut(s)	283, 739
Hpy188I	TCNGA	3 cut(s)	49, 73, 451
Hpy188III	TCNNGA	7 cut(s)	297, 339, 363, 405, 641, 686, 833
Hpy8I	GTNNAC	2 cut(s)	283, 739
HpyCH4V	TGCA	4 cut(s)	142, 486, 666, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	957
HpyF3I	CTNAG	4 cut(s)	450, 765, 807, 816
Hsp92II	CATG	7 cut(s)	135, 146, 222, 237, 666, 670, 904
KpnI	GGTACC	1 cut(s)	806
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	4 cut(s)	251, 697, 775, 829
LguI	GCTCTTC	1 cut(s)	434
LmnI	GCTCC	3 cut(s)	394, 597, 889
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	2 cut(s)	129, 133
MaeI	CTAG	3 cut(s)	18, 356, 398
MalI	GATC	4 cut(s)	253, 699, 777, 831
MboI	GATC	4 cut(s)	251, 697, 775, 829
MboII	GAAGA	9 cut(s)	209, 220, 354, 451, 472, 559, 661, 764, 937
MflI	RGATCY	2 cut(s)	697, 775
MhlI	GDGCHC	1 cut(s)	886
MluCI	AATT	4 cut(s)	728, 789, 844, 865
MlyI	GAGTC	4 cut(s)	38, 44, 395, 437
MmeI	TCCRAC	3 cut(s)	72, 96, 116
MnlI	CCTC	9 cut(s)	249, 252, 359, 445, 699, 748, 804, 825, 898
Mph1103I	ATGCAT	2 cut(s)	144, 668
MseI	TTAA	6 cut(s)	36, 204, 227, 267, 543, 864
MslI	CAYNNNNRTG	1 cut(s)	630
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	3 cut(s)	538, 703, 968
MvaI	CCWGG	3 cut(s)	538, 703, 968
MwoI	GCNNNNNNNGC	1 cut(s)	957
NdeI	CATATG	2 cut(s)	488, 943
NdeII	GATC	4 cut(s)	251, 697, 775, 829
NlaIII	CATG	7 cut(s)	135, 146, 222, 237, 666, 670, 904
NlaIV	GGNNCC	7 cut(s)	31, 409, 599, 608, 714, 804, 813
NsiI	ATGCAT	2 cut(s)	144, 668
NspI	RCATGY	3 cut(s)	135, 146, 670
NspV	TTCGAA	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	670
PaeR7I	CTCGAG	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	763
PciI	ACATGT	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	434
PfeI	GAWTC	5 cut(s)	68, 317, 637, 644, 680
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	4 cut(s)	38, 44, 395, 436
PpsI	GAGTC	4 cut(s)	38, 44, 395, 436
PscI	ACATGT	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	864
Psp6I	CCWGG	3 cut(s)	536, 701, 966
PspGI	CCWGG	3 cut(s)	536, 701, 966
PspN4I	GGNNCC	7 cut(s)	31, 409, 599, 608, 714, 804, 813
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	697, 775
RsaI	GTAC	2 cut(s)	804, 911
RsaNI	GTAC	2 cut(s)	803, 910
RseI	CAYNNNNRTG	1 cut(s)	630
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	6 cut(s)	36, 204, 227, 267, 543, 864
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	4 cut(s)	251, 697, 775, 829
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	4 cut(s)	38, 44, 395, 437
ScrFI	CCNGG	3 cut(s)	538, 703, 968
SduI	GDGCHC	1 cut(s)	886
SfaNI	GCATC	2 cut(s)	129, 133
Sfr274I	CTCGAG	1 cut(s)	363
SfuI	TTCGAA	1 cut(s)	158
SinI	GGWCC	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SphI	GCATGC	1 cut(s)	670
Sse9I	AATT	4 cut(s)	728, 789, 844, 865
SseBI	AGGCCT	1 cut(s)	763
SsiI	CCGC	1 cut(s)	887
SspI	AATATT	2 cut(s)	106, 618
SspMI	CTAG	3 cut(s)	18, 356, 398
StuI	AGGCCT	1 cut(s)	763
StyD4I	CCNGG	3 cut(s)	536, 701, 966
TaqI	TCGA	6 cut(s)	42, 53, 127, 158, 364, 647
TasI	AATT	4 cut(s)	728, 789, 844, 865
TfiI	GAWTC	5 cut(s)	68, 317, 637, 644, 680
Tru1I	TTAA	6 cut(s)	36, 204, 227, 267, 543, 864
Tru9I	TTAA	6 cut(s)	36, 204, 227, 267, 543, 864
TscAI	CASTG	4 cut(s)	261, 357, 422, 608
TseI	GCWGC	1 cut(s)	21
TspDTI	ATGAA	6 cut(s)	126, 222, 850, 938, 960, 969
TspRI	CASTG	4 cut(s)	261, 357, 422, 608
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	864
XapI	RAATTY	2 cut(s)	728, 789
XceI	RCATGY	3 cut(s)	135, 146, 670
XhoI	CTCGAG	1 cut(s)	363
XspI	CTAG	3 cut(s)	18, 356, 398
Zsp2I	ATGCAT	2 cut(s)	144, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.