Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005644

Physical Location & Seq

Genomic Coordinates Forward (+)

9425559 .. 9426707

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGGAAGGAGAAAACCTAGCAGCGATGGTCCCATTAACATTGACTCCGACTCCGAACCCGAACCCGACCTGAAGTGCTCGATTTCAGAAATTTACAATGATCAACTGTCAAAGCATCGAACATGTTGGATGCATGTATTAGCAGCTTCGAAAGCTCAAAGACAGAGCTTGACTCGGGGAGAAACTGAAGAGATCAAAAAGATATCCCCATGCTTTTTAACTTTTTCTCCTCACCGCCAGAGATCAACGAGGTGTGTTAAGAGCAAGTATGTCAACCGTGAAGTGTCAAGAAAAACACAGAACCAAGACACTAAAACGTGTTCAGTGTCAAGAAGAAAACCGGTGCCAGTCTCTCGAGCTTGTAGAGTGTCATGGAAGAAACAGAAGCTAGGCTCTGAGGCCTTTGAGTGCTACTTTGAGAACTTATGGAAGAGCTTCTCTGAGGACAAGAAAACTTCCTGCACACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

156

Amino Acids

18.01

Weight (kDa)

9.59

Isoelectric Point (pI)

75.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48480
fragaria_vesca	FvH4_3g25530 FvH4_5g07530
malus_domestica	MD14G1163400.v1.1
prunus_persica	Prupe.5G156800_v2.0.a1 Prupe.5G156800_v2.0.a1
pyrus_communis	pycom14g13600
rosa_chinensis	RchiOBHm_Chr7g0191071
rosa_laevigata	RLG00000004477
rosa_multiflora	Rmu_co8255195.1_g000001 Rmu_sc0005903.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264060
rosa_rugosa	Rorug01G0316800 Rorug01G0316900 Rorug01G0316900 Rorug06G0508100 Rorug06G0508200
rosa_samantha	Rh1CG137300 Rh1DG152400 Rh1DG152500 Rh7AG115700 Rh7AG115800 Rh7BG117700 Rh7BG117800 Rh7DG119400
rosa_wichuraiana	Rw1G028850 Rw7G010060 Rw7G010150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	343
AciI	CCGC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	2 cut(s)	92, 207
AflIII	ACRYGT	2 cut(s)	122, 317
AgeI	ACCGGT	1 cut(s)	340
AluBI	AGCT	6 cut(s)	146, 155, 168, 359, 388, 435
AluI	AGCT	6 cut(s)	146, 155, 168, 359, 388, 435
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	355
Ama87I	CYCGRG	2 cut(s)	174, 354
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	21, 143
ApoI	RAATTY	1 cut(s)	90
AsiGI	ACCGGT	1 cut(s)	340
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	174, 354
AvaII	GGWCC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	33, 155
BccI	CCATC	1 cut(s)	20
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	18, 389
BisI	GCNGC	2 cut(s)	22, 144
BlsI	GCNGC	2 cut(s)	23, 145
Bme18I	GGWCC	1 cut(s)	29
BmeT110I	CYCGRG	2 cut(s)	174, 354
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	2 cut(s)	31, 345
BmsI	GCATC	2 cut(s)	120, 124
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu14I	TTCGAA	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 35, 59, 65, 211, 241
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	387, 432
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	33, 155
BsgI	GTGCAG	1 cut(s)	445
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	1 cut(s)	343
BshTI	ACCGGT	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	80
BsiHKCI	CYCGRG	2 cut(s)	174, 354
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	401
BsoBI	CYCGRG	2 cut(s)	174, 354
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	3 cut(s)	100, 192, 242
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	2 cut(s)	388, 433
BspLI	GGNNCC	2 cut(s)	31, 345
BspQI	GCTCTTC	1 cut(s)	425
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	340
BssMI	GATC	3 cut(s)	100, 192, 242
Bst4CI	ACNGT	2 cut(s)	108, 278
Bst6I	CTCTTC	2 cut(s)	183, 425
BstBI	TTCGAA	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	396, 441
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	3 cut(s)	103, 195, 245
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	3 cut(s)	100, 192, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNSI	RCATGY	2 cut(s)	126, 137
BstV1I	GCAGC	2 cut(s)	33, 155
BsuRI	GGCC	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	29
CspAI	ACCGGT	1 cut(s)	340
CviAII	CATG	4 cut(s)	123, 134, 210, 372
CviJI	RGCY	8 cut(s)	146, 155, 168, 359, 388, 393, 401, 435
CviKI_1	RGCY	8 cut(s)	146, 155, 168, 359, 388, 393, 401, 435
DdeI	CTNAG	2 cut(s)	396, 441
DpnI	GATC	3 cut(s)	102, 194, 244
DpnII	GATC	3 cut(s)	100, 192, 242
Eam1104I	CTCTTC	2 cut(s)	183, 425
EarI	CTCTTC	2 cut(s)	183, 425
Eco147I	AGGCCT	1 cut(s)	401
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	92, 207
Eco88I	CYCGRG	2 cut(s)	174, 354
EcoRV	GATATC	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	135
FaeI	CATG	4 cut(s)	126, 137, 213, 375
FaiI	YATR	6 cut(s)	124, 135, 211, 270, 373, 427
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	4 cut(s)	122, 133, 209, 371
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	22, 144
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	22, 144
FspBI	CTAG	2 cut(s)	18, 389
GluI	GCNGC	2 cut(s)	22, 144
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	4 cut(s)	126, 137, 213, 375
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	44, 50, 172
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	5 cut(s)	49, 55, 88, 397, 442
Hpy188III	TCNNGA	3 cut(s)	288, 330, 354
Hpy8I	GTNNAC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	108, 278
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	133, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	396, 441
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	4 cut(s)	126, 137, 213, 375
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	100, 192, 242
LguI	GCTCTTC	1 cut(s)	425
LpnPI	CCDG	4 cut(s)	83, 251, 354, 360
Lsp1109I	GCAGC	2 cut(s)	33, 155
LweI	GCATC	2 cut(s)	120, 124
MaeI	CTAG	2 cut(s)	18, 389
MaeII	ACGT	1 cut(s)	317
MalI	GATC	3 cut(s)	102, 194, 244
MboI	GATC	3 cut(s)	100, 192, 242
MboII	GAAGA	4 cut(s)	200, 345, 388, 442
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	3 cut(s)	38, 44, 166
MmeI	TCCRAC	2 cut(s)	72, 107
MnlI	CCTC	4 cut(s)	240, 243, 391, 436
Mph1103I	ATGCAT	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	3 cut(s)	36, 218, 258
MspI	CCGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	3 cut(s)	100, 192, 242
NlaIII	CATG	4 cut(s)	126, 137, 213, 375
NlaIV	GGNNCC	2 cut(s)	31, 345
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	2 cut(s)	126, 137
NspV	TTCGAA	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	354
PceI	AGGCCT	1 cut(s)	401
PciI	ACATGT	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	23, 145
PleI	GAGTC	3 cut(s)	38, 44, 166
PpsI	GAGTC	3 cut(s)	38, 44, 166
PscI	ACATGT	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	31, 345
PspPI	GGNCC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	36, 218, 258
SatI	GCNGC	2 cut(s)	22, 144
Sau3AI	GATC	3 cut(s)	100, 192, 242
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	3 cut(s)	38, 44, 166
SduI	GDGCHC	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	120, 124
Sfr274I	CTCGAG	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	90
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	2 cut(s)	18, 389
StuI	AGGCCT	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	108, 278
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	4 cut(s)	80, 118, 149, 355
TasI	AATT	1 cut(s)	90
Tru1I	TTAA	3 cut(s)	36, 218, 258
Tru9I	TTAA	3 cut(s)	36, 218, 258
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	2 cut(s)	21, 143
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	90
XceI	RCATGY	2 cut(s)	126, 137
XhoI	CTCGAG	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	2 cut(s)	18, 389
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.