Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

18272283 .. 18275442

Gene Structure 3160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCTGCGTCACATGAAGCTTCAAATTACGATGAGGTTTCTATGCAGCAAAGTATGCTCTTCTCTGATGGTCTTCAGGACTTGAAGAATCTGCGAGCGCAGTTGTATTCAGCAGCCGAGTATTTCGAACTATCTTACACAACCGATGATAAAAAGCAGATTGTTGTAGAGACACTGAAAGACTACGCTGTGAAGGCTCTGGTGAATACAGTTGACCATTTAGGCTCTGTTACATATAAAGTGAATGACTTTATCGATGAAAAAGTCGATGAAGTATCAGAGACCGAGCTGCGAGTATCTTGCATCGAACAGAGGCTAAGAATGTGCCAAGAGTATATGGATCATGAAGGGCGTTCACAGCAATCACTTGTTATTGACACTCCAAAGTTCCATAAACGATACATCTTACCCGCGGGTGAAATTATGACTGCTACAAATCTTGAAAAGCTTAAGTACTTTGGAAGCAGTTTAGAGGATGCAGATGATTGGAACCAATTCCGAAATGCTGTTCGTGCTACAATCCGGGAAACGCCTCCACCACCTGTTAGAAAATCAACATCTCAGAGTTCATCTCCACGGCAACCACCTCAACGATCAGCAACCTTTTCGTTTACCTCTACCATTCCAAAGAAAGAACAAGATAAGAGATCAGTTTCACCGCATCGGTTTCCACTACTAAGATCTGGATCAGTCGCTACCAGGAAGTCAGCATCAATCAGCCGACCAACGACACCAAGCAAGAGCAGATCTATAACTCCTATACGGTATCCATCAGAACCAAGAAGATCGGCTTCGGTCCGAGTCGCATTCGAGAAAGATAACCAGAAAGAAACAGAGCAGCAACAACCGAGCAAGAGCAAACGATTGCTCAAGGCTTTGCTTAGTCGACGCAAAACCAAGAAAGATGACACTCTCTACACTTTCTTGGACGAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

35.78

Weight (kDa)

9.26

Isoelectric Point (pI)

63.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	886
AccII	CGCG	1 cut(s)	413
AciI	CCGC	3 cut(s)	411, 413, 659
AclWI	GGATC	2 cut(s)	348, 694
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	455
AflII	CTTAAG	1 cut(s)	449
AgsI	TTSAA	3 cut(s)	24, 85, 443
AjnI	CCWGG	1 cut(s)	698
AluBI	AGCT	3 cut(s)	20, 289, 448
AluI	AGCT	3 cut(s)	20, 289, 448
Alw26I	GTCTC	2 cut(s)	164, 275
AlwI	GGATC	2 cut(s)	348, 694
ApeKI	GCWGC	4 cut(s)	46, 113, 289, 838
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	796
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	3 cut(s)	214, 428, 648
AsuII	TTCGAA	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	796
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	58, 125, 276, 850
BccI	CCATC	2 cut(s)	62, 778
BceAI	ACGGC	1 cut(s)	593
BcgI	CGANNNNNNTGC	4 cut(s)	282, 316, 588, 622
BciT130I	CCWGG	1 cut(s)	700
BciVI	GTATCC	1 cut(s)	777
BcnI	CCSGG	1 cut(s)	524
BcoDI	GTCTC	2 cut(s)	164, 275
BfrI	CTTAAG	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	777
BglII	AGATCT	2 cut(s)	680, 746
BisI	GCNGC	4 cut(s)	47, 114, 290, 839
BlsI	GCNGC	4 cut(s)	48, 115, 291, 840
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	2 cut(s)	524, 700
Bme18I	GGWCC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	796
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	2 cut(s)	524, 700
BmsI	GCATC	4 cut(s)	312, 466, 670, 719
BpiI	GAAGAC	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	556, 588
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	524
Bsa29I	ATCGAT	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	685
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	411, 575
Bse8I	GATNNNNATC	1 cut(s)	685
BseBI	CCWGG	1 cut(s)	700
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	411, 575
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	575
BseXI	GCAGC	4 cut(s)	58, 125, 276, 850
Bsh1236I	CGCG	1 cut(s)	413
BshVI	ATCGAT	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	523
BsmAI	GTCTC	2 cut(s)	164, 275
BsmI	GAATGC	1 cut(s)	806
Bso31I	GGTCTC	1 cut(s)	275
Bsp119I	TTCGAA	1 cut(s)	126
Bsp143I	GATC	7 cut(s)	340, 593, 647, 680, 686, 746, 785
BspACI	CCGC	3 cut(s)	411, 413, 659
BspCNI	CTCAG	1 cut(s)	574
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	413
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	348, 694
BspQI	GCTCTTC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	411, 575
BssMI	GATC	7 cut(s)	340, 593, 647, 680, 686, 746, 785
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	2 cut(s)	211, 765
Bst6I	CTCTTC	1 cut(s)	65
BstAFI	CTTAAG	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	6, 96
BstDEI	CTNAG	4 cut(s)	317, 561, 677, 881
BstDSI	CCRYGG	2 cut(s)	411, 575
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	7 cut(s)	343, 596, 650, 683, 689, 749, 788
BstMAI	GTCTC	2 cut(s)	164, 275
BstMBI	GATC	7 cut(s)	340, 593, 647, 680, 686, 746, 785
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 194, 358, 512
BstNI	CCWGG	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	522, 698
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	4 cut(s)	58, 125, 276, 850
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	680, 746
BstYI	RGATCY	2 cut(s)	680, 746
Bsu15I	ATCGAT	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	777
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	411, 575
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	6, 96
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	796
Cfr42I	CCGCGG	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	255
CpoI	CGGWCCG	1 cut(s)	796
CseI	GACGC	1 cut(s)	897
Csp6I	GTAC	1 cut(s)	454
CspI	CGGWCCG	1 cut(s)	796
CviAII	CATG	2 cut(s)	14, 344
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	4 cut(s)	317, 561, 677, 881
DpnI	GATC	7 cut(s)	342, 595, 649, 682, 688, 748, 787
DpnII	GATC	7 cut(s)	340, 593, 647, 680, 686, 746, 785
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	698
FaeI	CATG	2 cut(s)	17, 347
FalI	AAGNNNNNCTT	2 cut(s)	775, 807
FatI	CATG	2 cut(s)	13, 343
FauI	CCCGC	2 cut(s)	406, 418
FblI	GTMKAC	1 cut(s)	886
Fnu4HI	GCNGC	4 cut(s)	47, 114, 290, 839
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	4 cut(s)	47, 114, 290, 839
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	4 cut(s)	47, 114, 290, 839
HapII	CCGG	1 cut(s)	523
HgaI	GACGC	1 cut(s)	897
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	17, 347
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	2 cut(s)	214, 887
HindII	GTYRAC	2 cut(s)	214, 887
HindIII	AAGCTT	2 cut(s)	18, 446
HinfI	GANTC	2 cut(s)	88, 801
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	3 cut(s)	214, 428, 648
Hpy166II	GTNNAC	4 cut(s)	214, 356, 612, 887
Hpy188I	TCNGA	6 cut(s)	67, 280, 500, 564, 775, 800
Hpy188III	TCNNGA	5 cut(s)	77, 344, 440, 684, 811
Hpy8I	GTNNAC	4 cut(s)	214, 356, 612, 887
Hpy99I	CGWCG	1 cut(s)	891
HpyAV	CCTTC	2 cut(s)	187, 341
HpyCH4III	ACNGT	2 cut(s)	211, 765
HpyCH4V	TGCA	3 cut(s)	46, 303, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 194, 358, 512
HpyF3I	CTNAG	4 cut(s)	317, 561, 677, 881
Hsp92II	CATG	2 cut(s)	17, 347
HspAI	GCGC	1 cut(s)	98
KspI	CCGCGG	1 cut(s)	414
Kzo9I	GATC	7 cut(s)	340, 593, 647, 680, 686, 746, 785
LguI	GCTCTTC	1 cut(s)	65
LpnPI	CCDG	9 cut(s)	18, 62, 185, 536, 555, 669, 685, 712, 836
Lsp1109I	GCAGC	4 cut(s)	58, 125, 276, 850
LweI	GCATC	4 cut(s)	312, 466, 670, 719
MaeIII	GTNAC	2 cut(s)	9, 229
MalI	GATC	7 cut(s)	342, 595, 649, 682, 688, 748, 787
MboI	GATC	7 cut(s)	340, 593, 647, 680, 686, 746, 785
MboII	GAAGA	4 cut(s)	52, 65, 97, 795
MflI	RGATCY	2 cut(s)	680, 746
MluCI	AATT	3 cut(s)	25, 420, 494
MlyI	GAGTC	1 cut(s)	810
MnlI	CCTC	6 cut(s)	28, 306, 466, 543, 597, 625
MroXI	GAANNNNTTC	1 cut(s)	494
MseI	TTAA	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	413
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	1 cut(s)	523
MspR9I	CCNGG	2 cut(s)	524, 700
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	700
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	4 cut(s)	55, 194, 358, 512
NciI	CCSGG	1 cut(s)	524
NdeII	GATC	7 cut(s)	340, 593, 647, 680, 686, 746, 785
NlaIII	CATG	2 cut(s)	17, 347
NlaIV	GGNNCC	1 cut(s)	491
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	9
NspV	TTCGAA	1 cut(s)	126
PagI	TCATGA	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	65
PctI	GAATGC	1 cut(s)	806
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	4 cut(s)	48, 115, 291, 840
PleI	GAGTC	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	809
Psp6I	CCWGG	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	796
PsuI	RGATCY	2 cut(s)	680, 746
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
Rsr2I	CGGWCCG	1 cut(s)	796
RsrII	CGGWCCG	1 cut(s)	796
SacII	CCGCGG	1 cut(s)	414
SalI	GTCGAC	1 cut(s)	885
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	4 cut(s)	47, 114, 290, 839
Sau3AI	GATC	7 cut(s)	340, 593, 647, 680, 686, 746, 785
Sau96I	GGNCC	1 cut(s)	796
ScaI	AGTACT	1 cut(s)	455
SchI	GAGTC	1 cut(s)	810
ScrFI	CCNGG	2 cut(s)	524, 700
SetI	ASST	8 cut(s)	22, 39, 291, 450, 544, 589, 605, 617
SfaNI	GCATC	4 cut(s)	312, 466, 670, 719
Sfr303I	CCGCGG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	126
SgrBI	CCGCGG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	796
SmlI	CTYRAG	2 cut(s)	449, 869
SmoI	CTYRAG	2 cut(s)	449, 869
Sse9I	AATT	3 cut(s)	25, 420, 494
SsiI	CCGC	3 cut(s)	411, 413, 659
StyD4I	CCNGG	2 cut(s)	522, 698
TaaI	ACNGT	2 cut(s)	211, 765
TaqI	TCGA	6 cut(s)	126, 255, 267, 306, 810, 886
TaqII	GACCGA	2 cut(s)	299, 784
TasI	AATT	3 cut(s)	25, 420, 494
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	4 cut(s)	46, 113, 289, 838
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	5 cut(s)	30, 273, 285, 360, 558
TspRI	CASTG	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	796
XmiI	GTMKAC	1 cut(s)	886
XmnI	GAANNNNTTC	1 cut(s)	494
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.