Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006872.1

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

156751 .. 159119

Gene Structure 2369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006872.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggctacacccatccctcgtgtagcatctaattttgatgaggtttctatgcatcagagcttgcttttctctgatagtctcaaggatttgaagaatttgagatcacaattatactcagcagcagagtactttgaactttcttatacaaatgatgaccaaaaacatatagtagtagaaacattgaaagattatgccattaaagctcttgtgaatacagtggaccatttgggttctgtgacatataaggtcaatgacctcttggatgaaaaagtggatgaagtttctggcacagaatttcgggtttcttgcattgaacagagactgaggacatgtcaagaatatattgatcatgagggtctttcccaacagtcatcagtgatagatactcccaaataccacaagcggtacatcttgccagttggtgagaccatgcgtggacccaacaaagctaaatctaaatacaaaggatgcaacttagatgacgaagatgaatggcatcaatttcggaatgctgttcgtgctacaatcagagaaaccccaccaactacagtcagtagagggcggtctccttctccacaacctcaaagacctgcagttttttcgtttacatctaccatgcccaagaaagaattagataagcgaacagtttcacctcatcggtttccacttttacggtctggatctcttgcaagtaggccgacgactccaagcaaaagtcagtcaaccaccccaaactcaagtagaccgacgactccaaatctttctaatgcaagacggcggtacccttcagagcctcgaaaatcagcttcaatgcggctaccagctgaaagagataatgtcagagaggctgaacaataccccagcaaaagtaaacgcctcctcaaagccttgcttagccggcgcaagtcaaagaaagatgacatgttatacacttacttggatgaatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.2

Weight (kDa)

9.47

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	598
Acc65I	GGTACC	1 cut(s)	780
AccB1I	GGYRCC	1 cut(s)	780
AccI	GTMKAC	1 cut(s)	742
AciI	CCGC	4 cut(s)	403, 562, 778, 814
AclWI	GGATC	1 cut(s)	688
AcsI	RAATTY	2 cut(s)	94, 293
AcuI	CTGAAG	1 cut(s)	771
AfaI	GTAC	3 cut(s)	128, 407, 782
AflIII	ACRYGT	2 cut(s)	329, 921
AgsI	TTSAA	5 cut(s)	91, 134, 184, 314, 810
AluBI	AGCT	5 cut(s)	60, 203, 449, 806, 824
AluI	AGCT	5 cut(s)	60, 203, 449, 806, 824
Alw26I	GTCTC	4 cut(s)	83, 313, 419, 570
AlwI	GGATC	1 cut(s)	688
AlwNI	CAGNNNCTG	1 cut(s)	322
AoxI	GGCC	1 cut(s)	695
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	94, 293
Asp700I	GAANNNNTTC	1 cut(s)	646
Asp718I	GGTACC	1 cut(s)	780
AspLEI	GCGC	1 cut(s)	903
AspS9I	GGNCC	2 cut(s)	220, 437
AsuHPI	GGTGA	2 cut(s)	434, 642
AvaII	GGWCC	2 cut(s)	220, 437
BaeI	ACNNNNGTAYC	2 cut(s)	764, 797
BanI	GGYRCC	1 cut(s)	780
BauI	CACGAG	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	791
BcgI	CGANNNNNNTGC	4 cut(s)	485, 519, 582, 616
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	4 cut(s)	83, 313, 419, 570
BfmI	CTRYAG	2 cut(s)	546, 591
BfuAI	ACCTGC	1 cut(s)	598
BisI	GCNGC	2 cut(s)	120, 815
BlpI	GCTNAGC	1 cut(s)	893
BlsI	GCNGC	2 cut(s)	121, 816
BmcAI	AGTACT	1 cut(s)	128
Bme18I	GGWCC	2 cut(s)	220, 437
BmgT120I	GGNCC	2 cut(s)	220, 437
BmiI	GGNNCC	2 cut(s)	439, 782
BmsI	GCATC	4 cut(s)	35, 61, 458, 505
Bpu1102I	GCTNAGC	1 cut(s)	893
BpuEI	CTTGAG	2 cut(s)	65, 721
BsaI	GGTCTC	2 cut(s)	419, 570
Bse118I	RCCGGY	1 cut(s)	897
Bse1I	ACTGG	1 cut(s)	416
BseGI	GGATG	5 cut(s)	12, 268, 280, 473, 946
BseMII	CTCAG	2 cut(s)	129, 314
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	869
BseXI	GCAGC	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	860
BshFI	GGCC	1 cut(s)	697
BshNI	GGYRCC	1 cut(s)	780
BsiSI	CCGG	1 cut(s)	898
BsmAI	GTCTC	4 cut(s)	83, 313, 419, 570
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	697
Bso31I	GGTCTC	2 cut(s)	419, 570
Bsp143I	GATC	3 cut(s)	101, 346, 680
Bsp1720I	GCTNAGC	1 cut(s)	893
BspACI	CCGC	4 cut(s)	403, 562, 778, 814
BspANI	GGCC	1 cut(s)	697
BspCNI	CTCAG	2 cut(s)	128, 315
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	439, 782
BspMAI	CTGCAG	1 cut(s)	595
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	1 cut(s)	688
BspT107I	GGYRCC	1 cut(s)	780
BspTNI	GGTCTC	2 cut(s)	419, 570
BsrFI	RCCGGY	1 cut(s)	897
BsrI	ACTGG	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	897
BssMI	GATC	3 cut(s)	101, 346, 680
BssSI	CACGAG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	18
Bst4CI	ACNGT	5 cut(s)	217, 369, 550, 646, 675
BstC8I	GCNNGC	2 cut(s)	62, 899
BstDEI	CTNAG	4 cut(s)	115, 323, 475, 893
BstF5I	GGATG	5 cut(s)	12, 268, 280, 473, 946
BstHHI	GCGC	1 cut(s)	903
BstKTI	GATC	3 cut(s)	104, 349, 683
BstMAI	GTCTC	4 cut(s)	83, 313, 419, 570
BstMBI	GATC	3 cut(s)	101, 346, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 518, 898
BstNSI	RCATGY	2 cut(s)	333, 925
BstSFI	CTRYAG	2 cut(s)	546, 591
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	697
BtsCI	GGATG	5 cut(s)	12, 268, 280, 473, 946
BtsIMutI	CAGTG	2 cut(s)	222, 381
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	62, 899
CaiI	CAGNNNCTG	1 cut(s)	322
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	903
Cfr10I	RCCGGY	1 cut(s)	897
Cfr13I	GGNCC	2 cut(s)	220, 437
Csp6I	GTAC	3 cut(s)	127, 406, 781
CviAII	CATG	5 cut(s)	330, 350, 430, 616, 922
CviQI	GTAC	3 cut(s)	127, 406, 781
DdeI	CTNAG	4 cut(s)	115, 323, 475, 893
DpnI	GATC	3 cut(s)	103, 348, 682
DpnII	GATC	3 cut(s)	101, 346, 680
Eco31I	GGTCTC	2 cut(s)	419, 570
Eco47I	GGWCC	2 cut(s)	220, 437
Eco57I	CTGAAG	1 cut(s)	771
EcoT22I	ATGCAT	1 cut(s)	54
FaeI	CATG	5 cut(s)	333, 353, 433, 619, 925
FalI	AAGNNNNNCTT	2 cut(s)	876, 908
FatI	CATG	5 cut(s)	329, 349, 429, 615, 921
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	2 cut(s)	120, 815
FokI	GGATG	3 cut(s)	275, 287, 480
Fsp4HI	GCNGC	2 cut(s)	120, 815
GlaI	GCGC	1 cut(s)	902
GluI	GCNGC	2 cut(s)	120, 815
GsaI	CCCAGC	1 cut(s)	864
HaeIII	GGCC	1 cut(s)	697
HapII	CCGG	1 cut(s)	898
HhaI	GCGC	1 cut(s)	903
Hin1II	CATG	5 cut(s)	333, 353, 433, 619, 925
Hin6I	GCGC	1 cut(s)	901
HinP1I	GCGC	1 cut(s)	901
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HinfI	GANTC	2 cut(s)	703, 751
HpaII	CCGG	1 cut(s)	898
HphI	GGTGA	2 cut(s)	434, 642
Hpy166II	GTNNAC	6 cut(s)	220, 437, 606, 723, 743, 872
Hpy188I	TCNGA	6 cut(s)	57, 73, 507, 530, 790, 842
Hpy188III	TCNNGA	3 cut(s)	335, 350, 678
Hpy8I	GTNNAC	6 cut(s)	220, 437, 606, 723, 743, 872
Hpy99I	CGWCG	2 cut(s)	703, 751
HpyAV	CCTTC	2 cut(s)	579, 795
HpyCH4III	ACNGT	5 cut(s)	217, 369, 550, 646, 675
HpyCH4V	TGCA	6 cut(s)	52, 309, 471, 593, 689, 770
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 518, 898
HpyF3I	CTNAG	4 cut(s)	115, 323, 475, 893
Hsp92II	CATG	5 cut(s)	333, 353, 433, 619, 925
HspAI	GCGC	1 cut(s)	901
KpnI	GGTACC	1 cut(s)	784
KroI	GCCGGC	1 cut(s)	897
KroNI	GCCGGC	1 cut(s)	899
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	101, 346, 680
LpnPI	CCDG	7 cut(s)	270, 429, 603, 663, 834, 874, 911
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	4 cut(s)	35, 61, 458, 505
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	103, 348, 682
MboI	GATC	3 cut(s)	101, 346, 680
MboII	GAAGA	2 cut(s)	103, 497
MflI	RGATCY	1 cut(s)	680
MluCI	AATT	6 cut(s)	31, 94, 107, 293, 500, 629
MlyI	GAGTC	2 cut(s)	697, 745
Mph1103I	ATGCAT	1 cut(s)	54
MroNI	GCCGGC	1 cut(s)	897
MroXI	GAANNNNTTC	1 cut(s)	646
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	824
MspI	CCGG	1 cut(s)	898
Mva1269I	GAATGC	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	200, 518, 898
NaeI	GCCGGC	1 cut(s)	899
NdeII	GATC	3 cut(s)	101, 346, 680
NgoMIV	GCCGGC	1 cut(s)	897
NlaIII	CATG	5 cut(s)	333, 353, 433, 619, 925
NlaIV	GGNNCC	2 cut(s)	439, 782
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	2 cut(s)	333, 925
PagI	TCATGA	1 cut(s)	349
PciI	ACATGT	2 cut(s)	329, 921
PctI	GAATGC	1 cut(s)	514
PdiI	GCCGGC	1 cut(s)	899
PdmI	GAANNNNTTC	1 cut(s)	646
PkrI	GCNGC	2 cut(s)	121, 816
PleI	GAGTC	2 cut(s)	697, 745
PpsI	GAGTC	2 cut(s)	697, 745
PscI	ACATGT	2 cut(s)	329, 921
PspFI	CCCAGC	1 cut(s)	860
PspN4I	GGNNCC	2 cut(s)	439, 782
PspPI	GGNCC	2 cut(s)	220, 437
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	3 cut(s)	128, 407, 782
RsaNI	GTAC	3 cut(s)	127, 406, 781
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	120, 815
Sau3AI	GATC	3 cut(s)	101, 346, 680
Sau96I	GGNCC	2 cut(s)	220, 437
ScaI	AGTACT	1 cut(s)	128
SchI	GAGTC	2 cut(s)	697, 745
SfaNI	GCATC	4 cut(s)	35, 61, 458, 505
SfcI	CTRYAG	2 cut(s)	546, 591
SinI	GGWCC	2 cut(s)	220, 437
SmlI	CTYRAG	2 cut(s)	80, 736
SmoI	CTYRAG	2 cut(s)	80, 736
Sse9I	AATT	6 cut(s)	31, 94, 107, 293, 500, 629
SsiI	CCGC	4 cut(s)	403, 562, 778, 814
TaaI	ACNGT	5 cut(s)	217, 369, 550, 646, 675
TaqI	TCGA	1 cut(s)	796
TaqII	GACCGA	1 cut(s)	760
TasI	AATT	6 cut(s)	31, 94, 107, 293, 500, 629
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	817
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	2 cut(s)	222, 381
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	279, 291, 504
TspRI	CASTG	2 cut(s)	222, 381
VpaK11BI	GGWCC	2 cut(s)	220, 437
XapI	RAATTY	2 cut(s)	94, 293
XceI	RCATGY	2 cut(s)	333, 925
XmiI	GTMKAC	1 cut(s)	742
XmnI	GAANNNNTTC	1 cut(s)	646
ZrmI	AGTACT	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.