Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Reverse (-)

1408014 .. 1410281

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCTACGCCCATCCCTCGCGTGGCATCTAATTTTGATGAGGTTTCTATGCATCAGAGCTTGCTCTTCTCTGATAGTCTCAAGGATTTGAAGAATTTGAGATCACAATTATACTCAGCAGCAGAGTACTTTGAACTTTCTTATACAAATGATGACCAAAAACATATAGTGGTAGAAACATTGAAAGATTATGCCATTAAAGCTCTTGTGAATACAGTGGACCATTTGGGTTCTGTGACATATAAGGTCAATGACCTCTTGGATGAAAAAGTGGATGAAGTTTCTGGCACAGAATTTCGGGTTTCTTGCATTGAACAGAGGCTGAGGACATGTCAAGAATATATTGATCATGAGGGTCTTTCCCAACAGTCATCAGTGATAGATACTCCCAAATACCACAAGCGGTACATCTTGCCAGTGGGTGAGACCATGCGTGGAGCCAACAAAGCTAAATCTAAATACAAAGGATGCAACTTAGATGATGAAGATGAATGGCATCAATTTCGGAATGCTGTTCGTGCTACAATTAGAGAAGCCCCACCAACTACAGTCAGGGGGCGGTCTCCTTCTCCACAACCTCAAAGACCTGCAGTATTTTCTTTTACATCTACCATGCCCAAGAAAGAATTAGATAAGCGAACAGTTTCACCTCATCGGTTTCCACTTTTACGGTCTGGATCTCTTGCAAGTAGGCCGACAACTCCAAGCAAAAGTCAGTCAACTACCCCAAACTCAAGTAGACCGACAACTCCAAATCTTTCCAATGCAAGACGGCGGTACCCTTCAGAGCCTCGGAAATCAGCTTCAATGCGGCTACCTGCTGAAAGAGATAATGGCAGAGAGGTTGAACAATACCCCAGCAAAAGTAAACGCCTCCTCAAAGCCTTGCTTAGCCGGCGCAAGTCAAAGAAAGATGATATGTTATACACTTACTTGGATGAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.04

Weight (kDa)

9.47

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	595, 826
Acc65I	GGTACC	1 cut(s)	777
AccB1I	GGYRCC	1 cut(s)	777
AccI	GTMKAC	1 cut(s)	739
AccII	CGCG	1 cut(s)	21
AciI	CCGC	4 cut(s)	403, 559, 775, 811
AclWI	GGATC	1 cut(s)	685
AcsI	RAATTY	2 cut(s)	94, 293
AcuI	CTGAAG	1 cut(s)	768
AfaI	GTAC	3 cut(s)	128, 407, 779
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	6 cut(s)	91, 134, 184, 314, 807, 848
AluBI	AGCT	4 cut(s)	60, 203, 449, 803
AluI	AGCT	4 cut(s)	60, 203, 449, 803
Alw26I	GTCTC	3 cut(s)	83, 419, 567
AlwI	GGATC	1 cut(s)	685
AlwNI	CAGNNNCTG	1 cut(s)	322
AoxI	GGCC	1 cut(s)	692
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	94, 293
Asp700I	GAANNNNTTC	1 cut(s)	643
Asp718I	GGTACC	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	434, 639
AvaII	GGWCC	1 cut(s)	220
BaeI	ACNNNNGTAYC	2 cut(s)	761, 794
BanI	GGYRCC	1 cut(s)	777
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	788
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	3 cut(s)	83, 419, 567
BfmI	CTRYAG	2 cut(s)	546, 588
BfuAI	ACCTGC	2 cut(s)	595, 826
BisI	GCNGC	2 cut(s)	120, 812
BlpI	GCTNAGC	1 cut(s)	890
BlsI	GCNGC	2 cut(s)	121, 813
BmcAI	AGTACT	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	439, 779
BmsI	GCATC	4 cut(s)	35, 61, 458, 505
Bpu10I	CCTNAGC	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	890
BpuEI	CTTGAG	2 cut(s)	65, 718
BsaI	GGTCTC	2 cut(s)	419, 567
BsaJI	CCNNGG	1 cut(s)	791
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	894
Bse1I	ACTGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	791
BseGI	GGATG	5 cut(s)	12, 268, 280, 473, 943
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	129, 314
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	857
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	694
BshNI	GGYRCC	1 cut(s)	777
BsiSI	CCGG	1 cut(s)	895
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	83, 419, 567
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	694
Bso31I	GGTCTC	2 cut(s)	419, 567
Bsp143I	GATC	3 cut(s)	101, 346, 677
Bsp1720I	GCTNAGC	1 cut(s)	890
BspACI	CCGC	4 cut(s)	403, 559, 775, 811
BspANI	GGCC	1 cut(s)	694
BspCNI	CTCAG	2 cut(s)	128, 315
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	439, 779
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	2 cut(s)	595, 826
BspPI	GGATC	1 cut(s)	685
BspQI	GCTCTTC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	777
BspTNI	GGTCTC	2 cut(s)	419, 567
BsrFI	RCCGGY	1 cut(s)	894
BsrI	ACTGG	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	894
BssECI	CCNNGG	1 cut(s)	791
BssMI	GATC	3 cut(s)	101, 346, 677
Bst4CI	ACNGT	5 cut(s)	217, 369, 550, 643, 672
Bst6I	CTCTTC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	62, 896
BstDEI	CTNAG	4 cut(s)	115, 323, 475, 890
BstF5I	GGATG	5 cut(s)	12, 268, 280, 473, 943
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	3 cut(s)	104, 349, 680
BstMAI	GTCTC	3 cut(s)	83, 419, 567
BstMBI	GATC	3 cut(s)	101, 346, 677
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 446, 518, 895
BstNSI	RCATGY	1 cut(s)	333
BstSFI	CTRYAG	2 cut(s)	546, 588
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	677
BstYI	RGATCY	1 cut(s)	677
BsuRI	GGCC	1 cut(s)	694
BtsCI	GGATG	5 cut(s)	12, 268, 280, 473, 943
BtsIMutI	CAGTG	3 cut(s)	222, 381, 423
BveI	ACCTGC	2 cut(s)	595, 826
Cac8I	GCNNGC	2 cut(s)	62, 896
CaiI	CAGNNNCTG	1 cut(s)	322
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	900
Cfr10I	RCCGGY	1 cut(s)	894
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	127, 406, 778
CviAII	CATG	4 cut(s)	330, 350, 430, 613
CviQI	GTAC	3 cut(s)	127, 406, 778
DdeI	CTNAG	4 cut(s)	115, 323, 475, 890
DpnI	GATC	3 cut(s)	103, 348, 679
DpnII	GATC	3 cut(s)	101, 346, 677
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco31I	GGTCTC	2 cut(s)	419, 567
Eco47I	GGWCC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	768
EcoT22I	ATGCAT	1 cut(s)	54
FaeI	CATG	4 cut(s)	333, 353, 433, 616
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FatI	CATG	4 cut(s)	329, 349, 429, 612
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	2 cut(s)	120, 812
FokI	GGATG	3 cut(s)	275, 287, 480
Fsp4HI	GCNGC	2 cut(s)	120, 812
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	2 cut(s)	120, 812
GsaI	CCCAGC	1 cut(s)	861
HaeIII	GGCC	1 cut(s)	694
HapII	CCGG	1 cut(s)	895
HhaI	GCGC	1 cut(s)	900
Hin1II	CATG	4 cut(s)	333, 353, 433, 616
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HpaII	CCGG	1 cut(s)	895
HphI	GGTGA	2 cut(s)	434, 639
Hpy166II	GTNNAC	4 cut(s)	220, 720, 740, 869
Hpy188I	TCNGA	5 cut(s)	57, 73, 507, 787, 795
Hpy188III	TCNNGA	3 cut(s)	335, 350, 675
Hpy8I	GTNNAC	4 cut(s)	220, 720, 740, 869
HpyAV	CCTTC	2 cut(s)	576, 792
HpyCH4III	ACNGT	5 cut(s)	217, 369, 550, 643, 672
HpyCH4V	TGCA	6 cut(s)	52, 309, 471, 590, 686, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 446, 518, 895
HpyF3I	CTNAG	4 cut(s)	115, 323, 475, 890
Hsp92II	CATG	4 cut(s)	333, 353, 433, 616
HspAI	GCGC	1 cut(s)	898
KpnI	GGTACC	1 cut(s)	781
KroI	GCCGGC	1 cut(s)	894
KroNI	GCCGGC	1 cut(s)	896
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	101, 346, 677
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	437
LpnPI	CCDG	8 cut(s)	270, 429, 538, 600, 660, 831, 871, 908
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	4 cut(s)	35, 61, 458, 505
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	103, 348, 679
MboI	GATC	3 cut(s)	101, 346, 677
MboII	GAAGA	3 cut(s)	58, 103, 497
MflI	RGATCY	1 cut(s)	677
MluCI	AATT	7 cut(s)	31, 94, 107, 293, 500, 525, 626
Mph1103I	ATGCAT	1 cut(s)	54
MroNI	GCCGGC	1 cut(s)	894
MroXI	GAANNNNTTC	1 cut(s)	643
MseI	TTAA	1 cut(s)	198
MspI	CCGG	1 cut(s)	895
Mva1269I	GAATGC	1 cut(s)	514
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	4 cut(s)	200, 446, 518, 895
NaeI	GCCGGC	1 cut(s)	896
NdeII	GATC	3 cut(s)	101, 346, 677
NgoMIV	GCCGGC	1 cut(s)	894
NlaIII	CATG	4 cut(s)	333, 353, 433, 616
NlaIV	GGNNCC	2 cut(s)	439, 779
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	1 cut(s)	333
PagI	TCATGA	1 cut(s)	349
PciI	ACATGT	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	71
PctI	GAATGC	1 cut(s)	514
PdiI	GCCGGC	1 cut(s)	896
PdmI	GAANNNNTTC	1 cut(s)	643
PkrI	GCNGC	2 cut(s)	121, 813
PscI	ACATGT	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	857
PspN4I	GGNNCC	2 cut(s)	439, 779
PspPI	GGNCC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	677
RsaI	GTAC	3 cut(s)	128, 407, 779
RsaNI	GTAC	3 cut(s)	127, 406, 778
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	120, 812
Sau3AI	GATC	3 cut(s)	101, 346, 677
Sau96I	GGNCC	1 cut(s)	220
ScaI	AGTACT	1 cut(s)	128
SfaNI	GCATC	4 cut(s)	35, 61, 458, 505
SfcI	CTRYAG	2 cut(s)	546, 588
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	80, 733
SmoI	CTYRAG	2 cut(s)	80, 733
Sse9I	AATT	7 cut(s)	31, 94, 107, 293, 500, 525, 626
SsiI	CCGC	4 cut(s)	403, 559, 775, 811
TaaI	ACNGT	5 cut(s)	217, 369, 550, 643, 672
TaqII	GACCGA	1 cut(s)	757
TasI	AATT	7 cut(s)	31, 94, 107, 293, 500, 525, 626
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	814
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	222, 381, 423
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	279, 291, 498, 504
TspRI	CASTG	3 cut(s)	222, 381, 423
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	2 cut(s)	94, 293
XceI	RCATGY	1 cut(s)	333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	643
ZrmI	AGTACT	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.