Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

31471741 .. 31475179

Gene Structure 3439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1222400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCCGGTCCCTCGGGTAGCATCTAATTTTGATGAGGTTTCTATGCATCAGAGCTTGCTCTTCTCTGATAGTCTCAGGGATTTAAAGAATTTGAGAACGCAATTGTACTCAGCGGCAGAGTACTTTGAACTATCGTACACAAATGATGACCAGAAACATATAGTGGTGGAAACATTGAAAGATTATGCCATTAAAGCTCTTGTGAATACGGTGGATCATTTGGGTTCCGTTACATACAAGGTTAACGATCTCTTCGATGAAAAGGTGGATGAAGTTTCTGGCACAGAATTTCGGGTATCTTGCATTGAACAGAGGATAAGGACATGTCAAGAATACATCGATCATGAGGGTCTTTCTCAACAGTCATCGGTTATAGATACTCCTAAATACCACAAGCGGTACATCTTGCCAGTTGGTGAGACCATGCACAGAGGCAGCAGAACTAAATCCAAATACCAAGGATGCAACCTAGATGACGAAGATGATTGGCATCAATTTCGGAATGCTGTTCGCGCTACAATTAGAGAAATCCCACCGTCTACAGTCAGCAAAGGGCGTTCTCCGTCTCCTTCTCCACAACCTCCCCAGCGAGCTGGAGTTTTTTCTTTTACATCTACCATGCCCAAAAAGGAATTAGACAAGCGAACAGTTTCGCCTCATCGATTTCCACTTTTACGGTCTGGATCTCTTGCAAGTAGGCCAACTACCCCAAACAAAAGTCGGTCAACTACCCCGAACTCAAGTAGGCCTACAACTCCAAATCTTTCTAATCCAAGAAGACGGTACCCTTCGGAGCCTCGGAAATCAGCTTCAATGCGATTACCTGCTGAAAGAGATAATGGCAGAGAGGTTGAACAATCCCCCAGCAAAAGTAAACGGCTCCTCAAGGCCTTGCTTAGCCGGCGCAAGTCAAAGAAAGATGACATGCTATACACTTATTTGGATGAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

36.34

Weight (kDa)

9.51

Isoelectric Point (pI)

64.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	832
Acc65I	GGTACC	1 cut(s)	783
AccB1I	GGYRCC	1 cut(s)	783
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	1 cut(s)	513
AciI	CCGC	2 cut(s)	113, 397
AclWI	GGATC	2 cut(s)	222, 691
AcsI	RAATTY	2 cut(s)	88, 287
AfaI	GTAC	5 cut(s)	107, 122, 137, 401, 785
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	5 cut(s)	128, 178, 308, 813, 854
AluBI	AGCT	4 cut(s)	54, 197, 593, 809
AluI	AGCT	4 cut(s)	54, 197, 593, 809
Alw26I	GTCTC	3 cut(s)	77, 413, 570
AlwI	GGATC	2 cut(s)	222, 691
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	3 cut(s)	698, 746, 888
ApeKI	GCWGC	1 cut(s)	435
ApoI	RAATTY	2 cut(s)	88, 287
Asp700I	GAANNNNTTC	1 cut(s)	649
Asp718I	GGTACC	1 cut(s)	783
AspLEI	GCGC	2 cut(s)	515, 906
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	783
BbsI	GAAGAC	1 cut(s)	784
BbvI	GCAGC	1 cut(s)	447
BceAI	ACGGC	1 cut(s)	893
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BcoDI	GTCTC	3 cut(s)	77, 413, 570
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	832
BisI	GCNGC	2 cut(s)	114, 436
BlpI	GCTNAGC	1 cut(s)	896
BlsI	GCNGC	2 cut(s)	115, 437
BmcAI	AGTACT	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	5 cut(s)	9, 226, 785, 795, 881
BmsI	GCATC	4 cut(s)	29, 55, 452, 499
BpiI	GAAGAC	1 cut(s)	784
BpmI	CTGGAG	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	896
BpuEI	CTTGAG	2 cut(s)	724, 869
Bsa29I	ATCGAT	2 cut(s)	339, 661
BsaBI	GATNNNNATC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	11, 457, 797
Bse118I	RCCGGY	2 cut(s)	4, 900
Bse1I	ACTGG	1 cut(s)	410
Bse8I	GATNNNNATC	1 cut(s)	489
BseCI	ATCGAT	2 cut(s)	339, 661
BseDI	CCNNGG	3 cut(s)	11, 457, 797
BseGI	GGATG	3 cut(s)	274, 467, 949
BseJI	GATNNNNATC	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	88, 123
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	872
BseXI	GCAGC	1 cut(s)	447
BseYI	CCCAGC	2 cut(s)	585, 863
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	3 cut(s)	700, 748, 890
BshNI	GGYRCC	1 cut(s)	783
BshVI	ATCGAT	2 cut(s)	339, 661
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	5, 901
BsmAI	GTCTC	3 cut(s)	77, 413, 570
BsmBI	CGTCTC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	3 cut(s)	700, 748, 890
Bso31I	GGTCTC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	12
Bsp143I	GATC	4 cut(s)	214, 247, 340, 683
Bsp1720I	GCTNAGC	1 cut(s)	896
BspACI	CCGC	2 cut(s)	113, 397
BspANI	GGCC	3 cut(s)	700, 748, 890
BspCNI	CTCAG	2 cut(s)	87, 122
BspDI	ATCGAT	2 cut(s)	339, 661
BspFNI	CGCG	1 cut(s)	513
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	5 cut(s)	9, 226, 785, 795, 881
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	2 cut(s)	222, 691
BspQI	GCTCTTC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	783
BspTNI	GGTCTC	1 cut(s)	413
BsrFI	RCCGGY	2 cut(s)	4, 900
BsrI	ACTGG	1 cut(s)	410
BssAI	RCCGGY	2 cut(s)	4, 900
BssECI	CCNNGG	3 cut(s)	11, 457, 797
BssMI	GATC	4 cut(s)	214, 247, 340, 683
BssT1I	CCWWGG	1 cut(s)	457
Bst4CI	ACNGT	7 cut(s)	211, 363, 537, 544, 649, 678, 783
Bst6I	CTCTTC	2 cut(s)	65, 257
BstC8I	GCNNGC	3 cut(s)	56, 591, 902
BstDEI	CTNAG	3 cut(s)	74, 109, 896
BstF5I	GGATG	3 cut(s)	274, 467, 949
BstFNI	CGCG	1 cut(s)	513
BstHHI	GCGC	2 cut(s)	515, 906
BstKTI	GATC	4 cut(s)	217, 250, 343, 686
BstMAI	GTCTC	3 cut(s)	77, 413, 570
BstMBI	GATC	4 cut(s)	214, 247, 340, 683
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 512, 901
BstNSI	RCATGY	2 cut(s)	327, 928
BstSFI	CTRYAG	1 cut(s)	540
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	447
BstV2I	GAAGAC	1 cut(s)	784
BstX2I	RGATCY	1 cut(s)	683
BstXI	CCANNNNNNTGG	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	683
Bsu15I	ATCGAT	2 cut(s)	339, 661
BsuRI	GGCC	3 cut(s)	700, 748, 890
BsuTUI	ATCGAT	2 cut(s)	339, 661
BtsCI	GGATG	3 cut(s)	274, 467, 949
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	3 cut(s)	56, 591, 902
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	2 cut(s)	515, 906
Cfr10I	RCCGGY	2 cut(s)	4, 900
Cfr13I	GGNCC	1 cut(s)	7
ClaI	ATCGAT	2 cut(s)	339, 661
Csp6I	GTAC	5 cut(s)	106, 121, 136, 400, 784
CviAII	CATG	5 cut(s)	324, 344, 424, 619, 925
CviQI	GTAC	5 cut(s)	106, 121, 136, 400, 784
DdeI	CTNAG	3 cut(s)	74, 109, 896
DpnI	GATC	4 cut(s)	216, 249, 342, 685
DpnII	GATC	4 cut(s)	214, 247, 340, 683
DraI	TTTAAA	1 cut(s)	84
Eam1104I	CTCTTC	2 cut(s)	65, 257
EarI	CTCTTC	2 cut(s)	65, 257
Eco130I	CCWWGG	1 cut(s)	457
Eco147I	AGGCCT	2 cut(s)	748, 890
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	570
FaeI	CATG	5 cut(s)	327, 347, 427, 622, 928
FatI	CATG	5 cut(s)	323, 343, 423, 618, 924
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	2 cut(s)	114, 436
FokI	GGATG	2 cut(s)	281, 474
Fsp4HI	GCNGC	2 cut(s)	114, 436
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	2 cut(s)	514, 905
GluI	GCNGC	2 cut(s)	114, 436
GsaI	CCCAGC	2 cut(s)	589, 867
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	700, 748, 890
HapII	CCGG	2 cut(s)	5, 901
HhaI	GCGC	2 cut(s)	515, 906
Hin1II	CATG	5 cut(s)	327, 347, 427, 622, 928
Hin6I	GCGC	2 cut(s)	513, 904
HinP1I	GCGC	2 cut(s)	513, 904
HincII	GTYRAC	2 cut(s)	244, 726
HindII	GTYRAC	2 cut(s)	244, 726
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	5, 901
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	5 cut(s)	138, 244, 540, 726, 875
Hpy188I	TCNGA	5 cut(s)	51, 67, 501, 793, 801
Hpy188III	TCNNGA	3 cut(s)	329, 344, 681
Hpy8I	GTNNAC	5 cut(s)	138, 244, 540, 726, 875
HpyAV	CCTTC	2 cut(s)	579, 798
HpyCH4III	ACNGT	7 cut(s)	211, 363, 537, 544, 649, 678, 783
HpyCH4V	TGCA	5 cut(s)	46, 303, 427, 465, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 512, 901
HpyF3I	CTNAG	3 cut(s)	74, 109, 896
Hsp92II	CATG	5 cut(s)	327, 347, 427, 622, 928
HspAI	GCGC	2 cut(s)	513, 904
KpnI	GGTACC	1 cut(s)	787
KroI	GCCGGC	1 cut(s)	900
KroNI	GCCGGC	1 cut(s)	902
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	214, 247, 340, 683
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	793, 885
Lsp1109I	GCAGC	1 cut(s)	447
LweI	GCATC	4 cut(s)	29, 55, 452, 499
MaeI	CTAG	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	4 cut(s)	216, 249, 342, 685
MboI	GATC	4 cut(s)	214, 247, 340, 683
MboII	GAAGA	4 cut(s)	52, 244, 491, 789
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	1 cut(s)	683
MluCI	AATT	7 cut(s)	25, 88, 101, 287, 494, 519, 632
Mph1103I	ATGCAT	1 cut(s)	48
MroNI	GCCGGC	1 cut(s)	900
MroXI	GAANNNNTTC	1 cut(s)	649
MseI	TTAA	3 cut(s)	83, 192, 243
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	2 cut(s)	5, 901
MunI	CAATTG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	508
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	194, 512, 901
NaeI	GCCGGC	1 cut(s)	902
NdeII	GATC	4 cut(s)	214, 247, 340, 683
NgoMIV	GCCGGC	1 cut(s)	900
NlaIII	CATG	5 cut(s)	327, 347, 427, 622, 928
NlaIV	GGNNCC	5 cut(s)	9, 226, 785, 795, 881
NsiI	ATGCAT	1 cut(s)	48
NspI	RCATGY	2 cut(s)	327, 928
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	2 cut(s)	748, 890
PciI	ACATGT	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	508
PdiI	GCCGGC	1 cut(s)	902
PdmI	GAANNNNTTC	1 cut(s)	649
PkrI	GCNGC	2 cut(s)	115, 437
PscI	ACATGT	1 cut(s)	323
PspFI	CCCAGC	2 cut(s)	585, 863
PspN4I	GGNNCC	5 cut(s)	9, 226, 785, 795, 881
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	683
RsaI	GTAC	5 cut(s)	107, 122, 137, 401, 785
RsaNI	GTAC	5 cut(s)	106, 121, 136, 400, 784
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	83, 192, 243
SatI	GCNGC	2 cut(s)	114, 436
Sau3AI	GATC	4 cut(s)	214, 247, 340, 683
Sau96I	GGNCC	1 cut(s)	7
ScaI	AGTACT	1 cut(s)	122
SfaNI	GCATC	4 cut(s)	29, 55, 452, 499
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	7
SmlI	CTYRAG	2 cut(s)	739, 884
SmoI	CTYRAG	2 cut(s)	739, 884
Sse9I	AATT	7 cut(s)	25, 88, 101, 287, 494, 519, 632
SseBI	AGGCCT	2 cut(s)	748, 890
SsiI	CCGC	2 cut(s)	113, 397
SspMI	CTAG	1 cut(s)	470
StuI	AGGCCT	2 cut(s)	748, 890
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	7 cut(s)	211, 363, 537, 544, 649, 678, 783
TaqI	TCGA	3 cut(s)	255, 339, 661
TaqII	GACCGA	1 cut(s)	711
TasI	AATT	7 cut(s)	25, 88, 101, 287, 494, 519, 632
TatI	WGTACW	2 cut(s)	105, 120
TauI	GCSGC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	83, 192, 243
Tru9I	TTAA	3 cut(s)	83, 192, 243
TseI	GCWGC	1 cut(s)	435
TspDTI	ATGAA	2 cut(s)	273, 285
TspGWI	ACGGA	2 cut(s)	217, 552
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	2 cut(s)	88, 287
XceI	RCATGY	2 cut(s)	327, 928
XmiI	GTMKAC	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	649
XspI	CTAG	1 cut(s)	470
ZrmI	AGTACT	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.