Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

20588107 .. 20590300

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23180.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTACATCTGCAATGCCGGTCCCTCGGGTAGCATCTAATTTTGATGAGGTTTCTATGCATCAGAGCTTGCTCTTCTCTGATAGTCTCAAGGATTTGAAGAATTTGAGAACGCAATTGTACTCAGCGGCAGAGTACTTTGAACTATCGTACACAAATGATGATCAGAAACATATAGTGGTGGAAACATTGAAAGATTATGCCATTAAAGCTCTCGTGAATACAGTGGATCATTTGGGTTCTGTTACATACAAGGTTAACGATCTCTTCGATGAAAAGGTGGATGAAGTTTCTGGCACAGAATTTCGGGTATCTTGCATTGAACAGAGGATAAGGACATGTCAAGAATACATCGATCATGAGGGTCTTTCTCAACAGTCATCGATTATAGCTACTCCTAAATACCACAAGCGGTACATTTTGCCAGTTGGTGAGACCATGCACGGAGGCAGCAGAACTAAATCCAAATACCAAGGATGCAACCTAGATGATGAAGATGATTGGCATCAATTTCGGAATGCTGTTCGCGCTACAATTAGAGAAACCCCACCGTCTACAGTCAGCAAAGGGCGTTCTCCGTCTCCTTCTCCACAACCTCCCCAGCGATCTGGAGTTTTTTCTTTTACATCTACCATGCCCAAAAAGGAATTAGACAAGCGAACAGTTTCGCCTCATCGATTTCCACTTTTACGGTCTGGATCTCTTGCAAGTAGGCCAACTACTCCAAACAAAAGTCGGTCAAGTACCCCGAACTCAAGTAGGCCGACAACTCCAAATCTTTCTAATCCAAGAAGACGGTACCCTTCAGAGCCTCGGAAGTCAGCTTCAATGCGATTACCTGCTGAAAGAGATAATGGCAGAGAGGTTGAACAATACCCCAGCAAAAGTAAACGGCTCCTCAAGGCCTTGCTTAGCCGGCGCAAGTCGAAGAAAGATGACATGTTATACACTTATTTGGATGAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

36.71

Weight (kDa)

9.49

Isoelectric Point (pI)

62.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	847
Acc65I	GGTACC	1 cut(s)	798
AccB1I	GGYRCC	1 cut(s)	798
AccI	GTMKAC	1 cut(s)	554
AccII	CGCG	1 cut(s)	528
AciI	CCGC	2 cut(s)	128, 412
AclWI	GGATC	2 cut(s)	237, 706
AcsI	RAATTY	2 cut(s)	103, 302
AcuI	CTGAAG	1 cut(s)	789
AfaI	GTAC	6 cut(s)	122, 137, 152, 416, 745, 800
AflIII	ACRYGT	2 cut(s)	338, 939
AgsI	TTSAA	6 cut(s)	100, 143, 193, 323, 828, 869
AluBI	AGCT	4 cut(s)	69, 212, 392, 824
AluI	AGCT	4 cut(s)	69, 212, 392, 824
Alw26I	GTCTC	3 cut(s)	92, 428, 585
AlwI	GGATC	2 cut(s)	237, 706
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	3 cut(s)	713, 761, 903
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	2 cut(s)	103, 302
Asp700I	GAANNNNTTC	1 cut(s)	664
Asp718I	GGTACC	1 cut(s)	798
AspLEI	GCGC	2 cut(s)	530, 921
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	798
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	799
BbvI	GCAGC	1 cut(s)	462
BceAI	ACGGC	1 cut(s)	908
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	3 cut(s)	92, 428, 585
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	847
BisI	GCNGC	2 cut(s)	129, 451
BlpI	GCTNAGC	1 cut(s)	911
BlsI	GCNGC	2 cut(s)	130, 452
BmcAI	AGTACT	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	3 cut(s)	24, 800, 896
BmsI	GCATC	4 cut(s)	44, 70, 467, 514
BpiI	GAAGAC	1 cut(s)	799
BpmI	CTGGAG	1 cut(s)	630
Bpu1102I	GCTNAGC	1 cut(s)	911
BpuEI	CTTGAG	3 cut(s)	74, 739, 884
Bsa29I	ATCGAT	3 cut(s)	354, 383, 676
BsaBI	GATNNNNATC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	26, 472, 812
Bse118I	RCCGGY	2 cut(s)	19, 915
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	504
BseCI	ATCGAT	3 cut(s)	354, 383, 676
BseDI	CCNNGG	3 cut(s)	26, 472, 812
BseGI	GGATG	3 cut(s)	289, 482, 964
BseJI	GATNNNNATC	1 cut(s)	504
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	887
BseXI	GCAGC	1 cut(s)	462
BseYI	CCCAGC	2 cut(s)	600, 878
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	715, 763, 905
BshNI	GGYRCC	1 cut(s)	798
BshVI	ATCGAT	3 cut(s)	354, 383, 676
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	20, 916
BslFI	GGGAC	1 cut(s)	8
BsmAI	GTCTC	3 cut(s)	92, 428, 585
BsmBI	CGTCTC	1 cut(s)	585
BsmFI	GGGAC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	3 cut(s)	715, 763, 905
Bso31I	GGTCTC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	27
Bsp143I	GATC	6 cut(s)	163, 229, 262, 355, 605, 698
Bsp1720I	GCTNAGC	1 cut(s)	911
BspACI	CCGC	2 cut(s)	128, 412
BspANI	GGCC	3 cut(s)	715, 763, 905
BspCNI	CTCAG	1 cut(s)	137
BspDI	ATCGAT	3 cut(s)	354, 383, 676
BspFNI	CGCG	1 cut(s)	528
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	3 cut(s)	24, 800, 896
BspMI	ACCTGC	1 cut(s)	847
BspPI	GGATC	2 cut(s)	237, 706
BspQI	GCTCTTC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	798
BspTNI	GGTCTC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	2 cut(s)	19, 915
BsrI	ACTGG	1 cut(s)	425
BssAI	RCCGGY	2 cut(s)	19, 915
BssECI	CCNNGG	3 cut(s)	26, 472, 812
BssMI	GATC	6 cut(s)	163, 229, 262, 355, 605, 698
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	472
Bst2BI	CACGAG	1 cut(s)	215
Bst4CI	ACNGT	7 cut(s)	226, 378, 552, 559, 664, 693, 798
Bst6I	CTCTTC	2 cut(s)	80, 272
BstC8I	GCNNGC	2 cut(s)	71, 917
BstDEI	CTNAG	2 cut(s)	124, 911
BstF5I	GGATG	3 cut(s)	289, 482, 964
BstFNI	CGCG	1 cut(s)	528
BstHHI	GCGC	2 cut(s)	530, 921
BstKTI	GATC	6 cut(s)	166, 232, 265, 358, 608, 701
BstMAI	GTCTC	3 cut(s)	92, 428, 585
BstMBI	GATC	6 cut(s)	163, 229, 262, 355, 605, 698
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 209, 527, 916
BstNSI	RCATGY	2 cut(s)	342, 943
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	1 cut(s)	462
BstV2I	GAAGAC	1 cut(s)	799
BstX2I	RGATCY	1 cut(s)	698
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	698
Bsu15I	ATCGAT	3 cut(s)	354, 383, 676
BsuRI	GGCC	3 cut(s)	715, 763, 905
BsuTUI	ATCGAT	3 cut(s)	354, 383, 676
BtsCI	GGATG	3 cut(s)	289, 482, 964
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	847
Cac8I	GCNNGC	2 cut(s)	71, 917
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	2 cut(s)	530, 921
Cfr10I	RCCGGY	2 cut(s)	19, 915
Cfr13I	GGNCC	1 cut(s)	22
ClaI	ATCGAT	3 cut(s)	354, 383, 676
Csp6I	GTAC	6 cut(s)	121, 136, 151, 415, 744, 799
CviAII	CATG	5 cut(s)	339, 359, 439, 634, 940
CviQI	GTAC	6 cut(s)	121, 136, 151, 415, 744, 799
DdeI	CTNAG	2 cut(s)	124, 911
DpnI	GATC	6 cut(s)	165, 231, 264, 357, 607, 700
DpnII	GATC	6 cut(s)	163, 229, 262, 355, 605, 698
Eam1104I	CTCTTC	2 cut(s)	80, 272
EarI	CTCTTC	2 cut(s)	80, 272
Eco130I	CCWWGG	1 cut(s)	472
Eco147I	AGGCCT	1 cut(s)	905
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	472
Esp3I	CGTCTC	1 cut(s)	585
FaeI	CATG	5 cut(s)	342, 362, 442, 637, 943
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	5 cut(s)	338, 358, 438, 633, 939
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	2 cut(s)	129, 451
FokI	GGATG	2 cut(s)	296, 489
Fsp4HI	GCNGC	2 cut(s)	129, 451
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	2 cut(s)	529, 920
GluI	GCNGC	2 cut(s)	129, 451
GsaI	CCCAGC	2 cut(s)	604, 882
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	3 cut(s)	715, 763, 905
HapII	CCGG	2 cut(s)	20, 916
HhaI	GCGC	2 cut(s)	530, 921
Hin1II	CATG	5 cut(s)	342, 362, 442, 637, 943
Hin6I	GCGC	2 cut(s)	528, 919
HinP1I	GCGC	2 cut(s)	528, 919
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HpaI	GTTAAC	1 cut(s)	259
HpaII	CCGG	2 cut(s)	20, 916
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	4 cut(s)	153, 259, 555, 890
Hpy188I	TCNGA	6 cut(s)	66, 82, 168, 516, 808, 816
Hpy188III	TCNNGA	5 cut(s)	217, 344, 359, 609, 696
Hpy8I	GTNNAC	4 cut(s)	153, 259, 555, 890
HpyAV	CCTTC	2 cut(s)	594, 813
HpyCH4III	ACNGT	7 cut(s)	226, 378, 552, 559, 664, 693, 798
HpyCH4V	TGCA	6 cut(s)	14, 61, 318, 442, 480, 707
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 209, 527, 916
HpyF3I	CTNAG	2 cut(s)	124, 911
Hsp92II	CATG	5 cut(s)	342, 362, 442, 637, 943
HspAI	GCGC	2 cut(s)	528, 919
KpnI	GGTACC	1 cut(s)	802
KroI	GCCGGC	1 cut(s)	915
KroNI	GCCGGC	1 cut(s)	917
Ksp22I	TGATCA	1 cut(s)	163
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	6 cut(s)	163, 229, 262, 355, 605, 698
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	900
LpnPI	CCDG	9 cut(s)	33, 279, 438, 594, 614, 681, 852, 892, 929
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	4 cut(s)	44, 70, 467, 514
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	6 cut(s)	165, 231, 264, 357, 607, 700
MboI	GATC	6 cut(s)	163, 229, 262, 355, 605, 698
MboII	GAAGA	6 cut(s)	67, 112, 259, 506, 804, 940
MfeI	CAATTG	1 cut(s)	116
MflI	RGATCY	1 cut(s)	698
MluCI	AATT	7 cut(s)	40, 103, 116, 302, 509, 534, 647
Mph1103I	ATGCAT	1 cut(s)	63
MroNI	GCCGGC	1 cut(s)	915
MroXI	GAANNNNTTC	1 cut(s)	664
MseI	TTAA	2 cut(s)	207, 258
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	2 cut(s)	20, 916
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	523
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	4 cut(s)	11, 209, 527, 916
NaeI	GCCGGC	1 cut(s)	917
NdeII	GATC	6 cut(s)	163, 229, 262, 355, 605, 698
NgoMIV	GCCGGC	1 cut(s)	915
NlaIII	CATG	5 cut(s)	342, 362, 442, 637, 943
NlaIV	GGNNCC	3 cut(s)	24, 800, 896
NsiI	ATGCAT	1 cut(s)	63
NspI	RCATGY	2 cut(s)	342, 943
PagI	TCATGA	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	905
PciI	ACATGT	2 cut(s)	338, 939
PciSI	GCTCTTC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	523
PdiI	GCCGGC	1 cut(s)	917
PdmI	GAANNNNTTC	1 cut(s)	664
PkrI	GCNGC	2 cut(s)	130, 452
PscI	ACATGT	2 cut(s)	338, 939
PspFI	CCCAGC	2 cut(s)	600, 878
PspN4I	GGNNCC	3 cut(s)	24, 800, 896
PspPI	GGNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	698
RsaI	GTAC	6 cut(s)	122, 137, 152, 416, 745, 800
RsaNI	GTAC	6 cut(s)	121, 136, 151, 415, 744, 799
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	207, 258
SatI	GCNGC	2 cut(s)	129, 451
Sau3AI	GATC	6 cut(s)	163, 229, 262, 355, 605, 698
Sau96I	GGNCC	1 cut(s)	22
ScaI	AGTACT	1 cut(s)	137
SfaNI	GCATC	4 cut(s)	44, 70, 467, 514
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	3 cut(s)	89, 754, 899
SmoI	CTYRAG	3 cut(s)	89, 754, 899
Sse9I	AATT	7 cut(s)	40, 103, 116, 302, 509, 534, 647
SseBI	AGGCCT	1 cut(s)	905
SsiI	CCGC	2 cut(s)	128, 412
SspMI	CTAG	1 cut(s)	485
StuI	AGGCCT	1 cut(s)	905
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	7 cut(s)	226, 378, 552, 559, 664, 693, 798
TaqI	TCGA	5 cut(s)	270, 354, 383, 676, 926
TaqII	GACCGA	1 cut(s)	726
TasI	AATT	7 cut(s)	40, 103, 116, 302, 509, 534, 647
TatI	WGTACW	2 cut(s)	120, 135
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	207, 258
Tru9I	TTAA	2 cut(s)	207, 258
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	450
TspDTI	ATGAA	3 cut(s)	288, 300, 507
TspGWI	ACGGA	2 cut(s)	459, 567
TspRI	CASTG	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	2 cut(s)	103, 302
XceI	RCATGY	2 cut(s)	342, 943
XmiI	GTMKAC	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	664
XspI	CTAG	1 cut(s)	485
ZrmI	AGTACT	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.