Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

66818036 .. 66820595

Gene Structure 2560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGAACAATGGCTACGCCCATCCCTCGTGTAGCATCTAATTTTGATGAGGTTTCTATGCATCAGAGCTTGCTTTTCTCTGATAGTCTCAAGGATTTGAAGAATTTGAGATCACAATTATACTCAGCAGCAGAGTACTTTGAACTTTCTTATACAAATGATGACCAAAAACATATAGTAGTAGAAACATTGAAAGATTATGCCATTAAAGCTCTTGTGAATACAGTGGACCATTTGGGTTCTGTGACATATAAGGTCAATGACCTCTTGGATGAAAAAGTGGATGAAGTTTCTGGCACAGAATTTCGGGTTTCTTGCATTGAACAGAGACTGAGGACATGTCAAGAATATATTGATCATGAGGGTCTTTCCCAACAGTCATCAGTGATAGATACTCCCAAATACCACAAGCGGTACATCTTGCCAGGCAATACTTCACTATCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.93

Weight (kDa)

5.14

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	412
AcsI	RAATTY	2 cut(s)	103, 302
AfaI	GTAC	2 cut(s)	137, 416
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	100, 143, 193, 323
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	2 cut(s)	69, 212
AluI	AGCT	2 cut(s)	69, 212
Alw26I	GTCTC	2 cut(s)	92, 322
AlwNI	CAGNNNCTG	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	103, 302
AspS9I	GGNCC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	92, 322
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	2 cut(s)	44, 70
BpuEI	CTTGAG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	426
BseGI	GGATG	3 cut(s)	21, 277, 289
BseMII	CTCAG	2 cut(s)	138, 323
BseXI	GCAGC	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	92, 322
Bsp143I	GATC	2 cut(s)	110, 355
BspACI	CCGC	1 cut(s)	412
BspCNI	CTCAG	2 cut(s)	137, 324
BspHI	TCATGA	1 cut(s)	358
BssMI	GATC	2 cut(s)	110, 355
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	226, 378
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	124, 332
BstF5I	GGATG	3 cut(s)	21, 277, 289
BstKTI	GATC	2 cut(s)	113, 358
BstMAI	GTCTC	2 cut(s)	92, 322
BstMBI	GATC	2 cut(s)	110, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	140
BtsCI	GGATG	3 cut(s)	21, 277, 289
BtsIMutI	CAGTG	2 cut(s)	231, 390
Cac8I	GCNNGC	1 cut(s)	71
CaiI	CAGNNNCTG	1 cut(s)	331
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	136, 415
CviAII	CATG	2 cut(s)	339, 359
CviJI	RGCY	3 cut(s)	14, 69, 212
CviKI_1	RGCY	3 cut(s)	14, 69, 212
CviQI	GTAC	2 cut(s)	136, 415
DdeI	CTNAG	2 cut(s)	124, 332
DpnI	GATC	2 cut(s)	112, 357
DpnII	GATC	2 cut(s)	110, 355
Eco47I	GGWCC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	63
FaeI	CATG	2 cut(s)	342, 362
FatI	CATG	2 cut(s)	338, 358
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	3 cut(s)	8, 284, 296
Fsp4HI	GCNGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	342, 362
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	66, 82
Hpy188III	TCNNGA	2 cut(s)	344, 359
Hpy8I	GTNNAC	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	226, 378
HpyCH4V	TGCA	2 cut(s)	61, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	124, 332
Hsp92II	CATG	2 cut(s)	342, 362
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	110, 355
LpnPI	CCDG	3 cut(s)	279, 411, 438
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	2 cut(s)	44, 70
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	112, 357
MboI	GATC	2 cut(s)	110, 355
MboII	GAAGA	1 cut(s)	112
MluCI	AATT	4 cut(s)	40, 103, 116, 302
MnlI	CCTC	5 cut(s)	36, 43, 275, 327, 355
Mph1103I	ATGCAT	1 cut(s)	63
MseI	TTAA	2 cut(s)	207, 448
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	2 cut(s)	110, 355
NlaIII	CATG	2 cut(s)	342, 362
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	63
NspI	RCATGY	1 cut(s)	342
PagI	TCATGA	1 cut(s)	358
PciI	ACATGT	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	130
PscI	ACATGT	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	229
PsrI	GAACNNNNNNTAC	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	331
RsaI	GTAC	2 cut(s)	137, 416
RsaNI	GTAC	2 cut(s)	136, 415
SaqAI	TTAA	2 cut(s)	207, 448
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	110, 355
Sau96I	GGNCC	1 cut(s)	229
ScaI	AGTACT	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	426
SetI	ASST	5 cut(s)	54, 71, 214, 258, 267
SfaNI	GCATC	2 cut(s)	44, 70
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	40, 103, 116, 302
SsiI	CCGC	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	226, 378
TasI	AATT	4 cut(s)	40, 103, 116, 302
TatI	WGTACW	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	207, 448
Tru9I	TTAA	2 cut(s)	207, 448
TscAI	CASTG	2 cut(s)	231, 390
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	288, 300
TspRI	CASTG	2 cut(s)	231, 390
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	103, 302
XceI	RCATGY	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.