Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

29508834 .. 29514082

Gene Structure 5249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G312800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCTCATGGGAACAATGACTACAAGTATGCCCGTCCCTCGAGTAGCATCTAATTTTGATGAGGTATCTATGCATCAGAGCTTGCTCTTCTCTGATAGTCTCAAGGATTTGAAGAATTTGAGAACACAATTATATTCAGCAGCAGAGTACTTTGAACTATCATACACAAATGATGACCAGAAACATATAGTGGTAGAAACATTGAAGGATTATGCCATTAAAGCTCTCGTGAATACGGTGGACCATTTGGGTTCTGTGACATATAAGGTTAATGATTTCTTTGATGAAAAAGTGGATGAAGTTTCCGGCACAGAATTTCGGGTATCTTGCATTGAACAGAGGCTAAGGACATGCCAAGAATATATTGATCATGAGGGTCTTTCCCAACAGTCATCAGTGATAGATACTCCGAAATACCACAAGCGGTACATCTTGCCAGTTGGTGAGACCATGCGCGGTGCCAACAAAACTAAATCCAAATATGAAGGTTGCAACCTGGATGATGAAGATGAATGGCATCAATTTCGGAATGCTGTTCGTGCTACCATTAGAGAAACCCCTCCACCTACAGTCAGCAAAGGGCGTTCTCCATCTCCTTCACCACAACCTTCCCAGCGGCCTGGAGTTTTTTCTTTTACATCTACCATGCCCAAAAAGGAATTAGAGAAGCGAACAGTTTCACCTCATCGGTTTCCACTTTTACGGTCTGGATCTCTTGCAAGTAGGCCAACGACCCCGAACAAAAGTCAGTCAACTACCCCAAACTCAAGTAGGCCTACCACTCCGAATCCTTCTAATGCAAGACGACGGTACCCTTCGGAGCCTCGTAAATCAGCTTCAATGCGATTACATGCTGAAAGGGAAAATGGAAGAGAGGTTGAACAATACCCCAGCAAAAGTAAACGCCTCCTCAAAGCCTTGCTTAGCCGGCGCAAGTCAAAGAAAGACGACATGCTATACACTTACTTGGACGAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

37.34

Weight (kDa)

9.34

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	810
AccB1I	GGYRCC	2 cut(s)	458, 810
AccII	CGCG	1 cut(s)	456
AciI	CCGC	3 cut(s)	424, 456, 616
AclWI	GGATC	1 cut(s)	718
AcsI	RAATTY	2 cut(s)	115, 314
AfaI	GTAC	3 cut(s)	149, 428, 812
AgsI	TTSAA	6 cut(s)	112, 155, 205, 335, 840, 881
AjnI	CCWGG	2 cut(s)	495, 619
AluBI	AGCT	3 cut(s)	81, 224, 836
AluI	AGCT	3 cut(s)	81, 224, 836
Alw26I	GTCTC	2 cut(s)	104, 440
AlwI	GGATC	1 cut(s)	718
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	3 cut(s)	617, 725, 773
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	115, 314
Asp700I	GAANNNNTTC	1 cut(s)	676
Asp718I	GGTACC	1 cut(s)	810
AspLEI	GCGC	2 cut(s)	456, 933
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	3 cut(s)	455, 591, 672
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	241
BaeI	ACNNNNGTAYC	2 cut(s)	794, 827
BanI	GGYRCC	2 cut(s)	458, 810
BarI	GAAGNNNNNNTAC	2 cut(s)	820, 852
BauI	CACGAG	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	598
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	2 cut(s)	497, 621
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	2 cut(s)	104, 440
BfmI	CTRYAG	1 cut(s)	567
BisI	GCNGC	2 cut(s)	141, 617
BlpI	GCTNAGC	1 cut(s)	923
BlsI	GCNGC	2 cut(s)	142, 618
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	497, 621
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	3 cut(s)	460, 812, 822
BmrFI	CCNGG	2 cut(s)	497, 621
BmsI	GCATC	3 cut(s)	56, 82, 526
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	344
Bpu1102I	GCTNAGC	1 cut(s)	923
BpuEI	CTTGAG	2 cut(s)	86, 751
BsaI	GGTCTC	1 cut(s)	440
Bse118I	RCCGGY	1 cut(s)	927
Bse1I	ACTGG	1 cut(s)	437
BseBI	CCWGG	2 cut(s)	497, 621
BseGI	GGATG	2 cut(s)	301, 505
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	899
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	2 cut(s)	612, 890
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	619, 727, 775
BshNI	GGYRCC	2 cut(s)	458, 810
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	306, 928
BslFI	GGGAC	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	104, 440
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	3 cut(s)	619, 727, 775
Bso31I	GGTCTC	1 cut(s)	440
BsoBI	CYCGRG	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	367, 710
Bsp1720I	GCTNAGC	1 cut(s)	923
BspACI	CCGC	3 cut(s)	424, 456, 616
BspANI	GGCC	3 cut(s)	619, 727, 775
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	460, 812, 822
BspPI	GGATC	1 cut(s)	718
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	2 cut(s)	458, 810
BspTNI	GGTCTC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	927
BsrI	ACTGG	1 cut(s)	437
BssAI	RCCGGY	1 cut(s)	927
BssMI	GATC	2 cut(s)	367, 710
BssSI	CACGAG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	2 cut(s)	497, 621
Bst4CI	ACNGT	6 cut(s)	238, 390, 571, 676, 705, 810
Bst6I	CTCTTC	2 cut(s)	92, 865
BstC8I	GCNNGC	2 cut(s)	83, 929
BstDEI	CTNAG	2 cut(s)	344, 923
BstF5I	GGATG	2 cut(s)	301, 505
BstFNI	CGCG	1 cut(s)	456
BstHHI	GCGC	2 cut(s)	456, 933
BstKTI	GATC	2 cut(s)	370, 713
BstMAI	GTCTC	2 cut(s)	104, 440
BstMBI	GATC	2 cut(s)	367, 710
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 539, 928
BstNI	CCWGG	2 cut(s)	497, 621
BstNSI	RCATGY	3 cut(s)	354, 854, 955
BstSCI	CCNGG	2 cut(s)	495, 619
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	710
BstXI	CCANNNNNNTGG	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	710
BsuRI	GGCC	3 cut(s)	619, 727, 775
BtsCI	GGATG	2 cut(s)	301, 505
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	83, 929
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	2 cut(s)	456, 933
Cfr10I	RCCGGY	1 cut(s)	927
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	3 cut(s)	148, 427, 811
CviAII	CATG	7 cut(s)	7, 351, 371, 451, 646, 851, 952
CviQI	GTAC	3 cut(s)	148, 427, 811
DdeI	CTNAG	2 cut(s)	344, 923
DpnI	GATC	2 cut(s)	369, 712
DpnII	GATC	2 cut(s)	367, 710
Eam1104I	CTCTTC	2 cut(s)	92, 865
EarI	CTCTTC	2 cut(s)	92, 865
Eco147I	AGGCCT	1 cut(s)	775
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	495, 619
EcoT22I	ATGCAT	1 cut(s)	75
FaeI	CATG	7 cut(s)	10, 354, 374, 454, 649, 854, 955
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	7 cut(s)	6, 350, 370, 450, 645, 850, 951
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	141, 617
FokI	GGATG	2 cut(s)	308, 512
Fsp4HI	GCNGC	2 cut(s)	141, 617
GlaI	GCGC	2 cut(s)	455, 932
GluI	GCNGC	2 cut(s)	141, 617
GsaI	CCCAGC	2 cut(s)	616, 894
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	3 cut(s)	619, 727, 775
HapII	CCGG	2 cut(s)	306, 928
HhaI	GCGC	2 cut(s)	456, 933
Hin1II	CATG	7 cut(s)	10, 354, 374, 454, 649, 854, 955
Hin6I	GCGC	2 cut(s)	454, 931
HinP1I	GCGC	2 cut(s)	454, 931
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	1 cut(s)	787
HpaII	CCGG	2 cut(s)	306, 928
HphI	GGTGA	3 cut(s)	455, 591, 672
Hpy166II	GTNNAC	3 cut(s)	241, 753, 902
Hpy188I	TCNGA	6 cut(s)	78, 94, 411, 528, 786, 820
Hpy188III	TCNNGA	3 cut(s)	229, 371, 708
Hpy8I	GTNNAC	3 cut(s)	241, 753, 902
Hpy99I	CGWCG	1 cut(s)	810
HpyAV	CCTTC	6 cut(s)	199, 479, 606, 618, 801, 825
HpyCH4III	ACNGT	6 cut(s)	238, 390, 571, 676, 705, 810
HpyCH4V	TGCA	5 cut(s)	73, 330, 492, 719, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 539, 928
HpyF3I	CTNAG	2 cut(s)	344, 923
Hsp92II	CATG	7 cut(s)	10, 354, 374, 454, 649, 854, 955
HspAI	GCGC	2 cut(s)	454, 931
KpnI	GGTACC	1 cut(s)	814
KroI	GCCGGC	1 cut(s)	927
KroNI	GCCGGC	1 cut(s)	929
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	367, 710
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	820
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	3 cut(s)	56, 82, 526
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	2 cut(s)	369, 712
MboI	GATC	2 cut(s)	367, 710
MboII	GAAGA	4 cut(s)	79, 124, 518, 882
MflI	RGATCY	1 cut(s)	710
MluCI	AATT	6 cut(s)	52, 115, 128, 314, 521, 659
Mph1103I	ATGCAT	1 cut(s)	75
MroNI	GCCGGC	1 cut(s)	927
MroXI	GAANNNNTTC	1 cut(s)	676
MseI	TTAA	2 cut(s)	219, 270
MspA1I	CMGCKG	1 cut(s)	616
MspI	CCGG	2 cut(s)	306, 928
MspR9I	CCNGG	2 cut(s)	497, 621
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	2 cut(s)	497, 621
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	221, 539, 928
NaeI	GCCGGC	1 cut(s)	929
NdeII	GATC	2 cut(s)	367, 710
NgoMIV	GCCGGC	1 cut(s)	927
NlaIII	CATG	7 cut(s)	10, 354, 374, 454, 649, 854, 955
NlaIV	GGNNCC	3 cut(s)	460, 812, 822
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	3 cut(s)	354, 854, 955
PaeR7I	CTCGAG	1 cut(s)	39
PagI	TCATGA	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	775
PciSI	GCTCTTC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	535
PdiI	GCCGGC	1 cut(s)	929
PdmI	GAANNNNTTC	1 cut(s)	676
PfeI	GAWTC	1 cut(s)	787
PkrI	GCNGC	2 cut(s)	142, 618
Psp6I	CCWGG	2 cut(s)	495, 619
PspFI	CCCAGC	2 cut(s)	612, 890
PspGI	CCWGG	2 cut(s)	495, 619
PspN4I	GGNNCC	3 cut(s)	460, 812, 822
PspPI	GGNCC	1 cut(s)	241
PspXI	VCTCGAGB	1 cut(s)	39
PsrI	GAACNNNNNNTAC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	710
RsaI	GTAC	3 cut(s)	149, 428, 812
RsaNI	GTAC	3 cut(s)	148, 427, 811
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	219, 270
SatI	GCNGC	2 cut(s)	141, 617
Sau3AI	GATC	2 cut(s)	367, 710
Sau96I	GGNCC	1 cut(s)	241
ScaI	AGTACT	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	497, 621
SfaNI	GCATC	3 cut(s)	56, 82, 526
SfcI	CTRYAG	1 cut(s)	567
Sfr274I	CTCGAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	241
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	3 cut(s)	39, 101, 766
SmoI	CTYRAG	3 cut(s)	39, 101, 766
Sse9I	AATT	6 cut(s)	52, 115, 128, 314, 521, 659
SseBI	AGGCCT	1 cut(s)	775
SsiI	CCGC	3 cut(s)	424, 456, 616
StuI	AGGCCT	1 cut(s)	775
StyD4I	CCNGG	2 cut(s)	495, 619
TaaI	ACNGT	6 cut(s)	238, 390, 571, 676, 705, 810
TaqI	TCGA	1 cut(s)	40
TasI	AATT	6 cut(s)	52, 115, 128, 314, 521, 659
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	1 cut(s)	787
Tru1I	TTAA	2 cut(s)	219, 270
Tru9I	TTAA	2 cut(s)	219, 270
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	5 cut(s)	300, 312, 498, 519, 525
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	2 cut(s)	115, 314
XceI	RCATGY	3 cut(s)	354, 854, 955
XhoI	CTCGAG	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	676
ZrmI	AGTACT	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.