Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

53141731 .. 53145769

Gene Structure 4039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG408900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGAACAATGGCTACGCCCATCCTTCGTGTAGCATCTAATTTTGATGAGGTTTCTATGCATCAGAGCTTGCTTTTCTCTGATAGTCTCAAGGATTTGAAGAATTTGAGATCACAATTATACTCAGCAGCAGAGTACTTTGAACTTTCTTATACAAATGATGACCAAAAACATATAGTAGTAGAAACATTGAAAGATTATGCCATTAAAGCTCTTGTGAATACAGTGGACCATTTGGGTTCTGTGACATATAAGGTCAATGACCTCTTGGATGAAAAAGTGGATGAAGTTTCTGGCACAGAATTTCGGGTTTCTTGCATTGAACAGAGGCTGAGGACATGTCAAGAATATATTGATCATGAGGGTCTTTCCCAACAGTCATCAGTGATAGATACTCCCAAATACCACAAGCGGTACATCTTGCCAGTTGGTGAGACCATGCGTGGAGCCAACAAAGCTAAATCTAAATACAAAGGATGCAACTTAGATGATGAAGATGAATGGCATCAATTTCGGAATGCTGTTCGTGCTACAATCAGAGAAACCCCACCAACTACAGTCAGTAGAGGGCGGTCTCCTTCTCCACAACCTCAAAGACCTGCAGTTTTTTCGTTTACATCTACCATGCCCAAGAAAGAATTAGATAAGCGAACAGTTTCACCTCATCGGTTTCCACTTTTACGGTCTGGATCTCTTGCAAGTAGGCCGACAACTCCAAGCAAAAGTCAGTCAACTACCCCAAACTCAAGTAGACCGACGACTCCAAATCTTTCTAATGCAAGACGGCGGGTGAGTGTAGGATTGTTTACACCCGAACATAATTTTTGCTGGAAAGAGTGGAAGTTATCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

32.29

Weight (kDa)

9.17

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
AccI	GTMKAC	1 cut(s)	751
AciI	CCGC	3 cut(s)	412, 571, 787
AclWI	GGATC	1 cut(s)	697
AcsI	RAATTY	2 cut(s)	103, 302
AfaI	GTAC	2 cut(s)	137, 416
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	100, 143, 193, 323
AluBI	AGCT	3 cut(s)	69, 212, 458
AluI	AGCT	3 cut(s)	69, 212, 458
Alw26I	GTCTC	3 cut(s)	92, 428, 579
AlwI	GGATC	1 cut(s)	697
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	704
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	103, 302
Asp700I	GAANNNNTTC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	3 cut(s)	443, 651, 802
AvaII	GGWCC	1 cut(s)	229
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	800
BcgI	CGANNNNNNTGC	4 cut(s)	494, 528, 591, 625
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	92, 428, 579
BfmI	CTRYAG	2 cut(s)	555, 600
BfuAI	ACCTGC	1 cut(s)	607
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
BmcAI	AGTACT	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	448
BmsI	GCATC	4 cut(s)	44, 70, 467, 514
Bpu10I	CCTNAGC	1 cut(s)	332
BpuEI	CTTGAG	2 cut(s)	74, 730
BsaI	GGTCTC	2 cut(s)	428, 579
Bse1I	ACTGG	1 cut(s)	425
BseGI	GGATG	4 cut(s)	21, 277, 289, 482
BseMII	CTCAG	2 cut(s)	138, 323
BseNI	ACTGG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	706
BsmAI	GTCTC	3 cut(s)	92, 428, 579
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	1 cut(s)	706
Bso31I	GGTCTC	2 cut(s)	428, 579
Bsp143I	GATC	3 cut(s)	110, 355, 689
BspACI	CCGC	3 cut(s)	412, 571, 787
BspANI	GGCC	1 cut(s)	706
BspCNI	CTCAG	2 cut(s)	137, 324
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	1 cut(s)	697
BspTNI	GGTCTC	2 cut(s)	428, 579
BsrI	ACTGG	1 cut(s)	425
BssMI	GATC	3 cut(s)	110, 355, 689
Bst4CI	ACNGT	5 cut(s)	226, 378, 559, 655, 684
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	3 cut(s)	124, 332, 484
BstF5I	GGATG	4 cut(s)	21, 277, 289, 482
BstKTI	GATC	3 cut(s)	113, 358, 692
BstMAI	GTCTC	3 cut(s)	92, 428, 579
BstMBI	GATC	3 cut(s)	110, 355, 689
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 455, 527
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	2 cut(s)	555, 600
BstV1I	GCAGC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
BsuRI	GGCC	1 cut(s)	706
BtsCI	GGATG	4 cut(s)	21, 277, 289, 482
BtsIMutI	CAGTG	2 cut(s)	231, 390
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	71
CaiI	CAGNNNCTG	1 cut(s)	331
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	136, 415
CviAII	CATG	4 cut(s)	339, 359, 439, 625
CviJI	RGCY	7 cut(s)	14, 69, 212, 331, 449, 458, 706
CviKI_1	RGCY	7 cut(s)	14, 69, 212, 331, 449, 458, 706
CviQI	GTAC	2 cut(s)	136, 415
DdeI	CTNAG	3 cut(s)	124, 332, 484
DpnI	GATC	3 cut(s)	112, 357, 691
DpnII	GATC	3 cut(s)	110, 355, 689
Eco31I	GGTCTC	2 cut(s)	428, 579
Eco47I	GGWCC	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	63
FaeI	CATG	4 cut(s)	342, 362, 442, 628
FatI	CATG	4 cut(s)	338, 358, 438, 624
FauI	CCCGC	1 cut(s)	780
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	751
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	4 cut(s)	8, 284, 296, 489
Fsp4HI	GCNGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	706
Hin1II	CATG	4 cut(s)	342, 362, 442, 628
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	1 cut(s)	760
HphI	GGTGA	3 cut(s)	443, 651, 802
Hpy166II	GTNNAC	5 cut(s)	229, 615, 732, 752, 807
Hpy188I	TCNGA	4 cut(s)	66, 82, 516, 539
Hpy188III	TCNNGA	3 cut(s)	344, 359, 687
Hpy8I	GTNNAC	5 cut(s)	229, 615, 732, 752, 807
Hpy99I	CGWCG	1 cut(s)	760
HpyAV	CCTTC	2 cut(s)	35, 588
HpyCH4III	ACNGT	5 cut(s)	226, 378, 559, 655, 684
HpyCH4V	TGCA	6 cut(s)	61, 318, 480, 602, 698, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 455, 527
HpyF3I	CTNAG	3 cut(s)	124, 332, 484
Hsp92II	CATG	4 cut(s)	342, 362, 442, 628
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	110, 355, 689
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	5 cut(s)	279, 438, 612, 672, 814
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	4 cut(s)	44, 70, 467, 514
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	112, 357, 691
MboI	GATC	3 cut(s)	110, 355, 689
MboII	GAAGA	2 cut(s)	112, 506
MflI	RGATCY	1 cut(s)	689
MluCI	AATT	7 cut(s)	40, 103, 116, 302, 509, 638, 820
MlyI	GAGTC	1 cut(s)	754
MnlI	CCTC	8 cut(s)	43, 275, 321, 327, 355, 560, 600, 672
Mph1103I	ATGCAT	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	655
MseI	TTAA	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	523
MwoI	GCNNNNNNNGC	3 cut(s)	209, 455, 527
NdeII	GATC	3 cut(s)	110, 355, 689
NlaIII	CATG	4 cut(s)	342, 362, 442, 628
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	63
NspI	RCATGY	1 cut(s)	342
PagI	TCATGA	1 cut(s)	358
PciI	ACATGT	1 cut(s)	338
PctI	GAATGC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	655
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
PscI	ACATGT	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	229
PsrI	GAACNNNNNNTAC	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	689
RsaI	GTAC	2 cut(s)	137, 416
RsaNI	GTAC	2 cut(s)	136, 415
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	3 cut(s)	110, 355, 689
Sau96I	GGNCC	1 cut(s)	229
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	1 cut(s)	754
SetI	ASST	9 cut(s)	54, 71, 214, 258, 267, 460, 592, 601, 664
SfaNI	GCATC	4 cut(s)	44, 70, 467, 514
SfcI	CTRYAG	2 cut(s)	555, 600
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	2 cut(s)	89, 745
SmoI	CTYRAG	2 cut(s)	89, 745
Sse9I	AATT	7 cut(s)	40, 103, 116, 302, 509, 638, 820
SsiI	CCGC	3 cut(s)	412, 571, 787
TaaI	ACNGT	5 cut(s)	226, 378, 559, 655, 684
TaqII	GACCGA	1 cut(s)	769
TasI	AATT	7 cut(s)	40, 103, 116, 302, 509, 638, 820
TatI	WGTACW	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	231, 390
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	288, 300, 507, 513
TspRI	CASTG	2 cut(s)	231, 390
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	103, 302
XceI	RCATGY	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	751
XmnI	GAANNNNTTC	1 cut(s)	655
ZrmI	AGTACT	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.