Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

68276072 .. 68280716

Gene Structure 4645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG423500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGAACAATGGCTACGCCCATCCCTCGTGTAGCATCTAATTTTGATGAGGTTTCTATGCATCAGAGTTTGCTCTTCTCTGATAGTCTCAAGGATTTGAAGAATTTGAGATCACAATTATACTCAGCAGCAGAGTACTTTGAACTTTCTTATACAAATGATGACCAAAAACATATAGTGGTAGAAACATTGAAAGATTATGCCATTAAAGCTCTTGTGAATACAGTGGACCATTTGGGTTCTGTGACATATAAGGTCAATGACCTCTTGGATGAAAAAGTGGATGAAGTTTCTGGCACAGAATTTCGGGTTTCTTGCATTGAACAGAGGCTGAGGACATGTCAAGAATATATTGATCATGAGGGTCTTTCTCAACAGTCATCAGTGATAGATACTCCCACATACCACAAGCGGTACATCTTGCCAGTTGGTGAGACCATGCATGGAGCCAATAAATCTAAAGCTAAATACAAAGGATGCAACTTAGATGATGAAGATGAATGGCATCAATTTCGGAATGCTGTTCGTGCTACAATCAGAGAAACCCCACCAACTACAGTCAGAGGGCGGTCTCCATCTCCACAACCTCAAAGACCTGCAGTTTTTTCATTTACATCTACCATGCCCAAGAAAGAATTAGATAAGCGAACAGTTTCACCTCATCGGTTTCCGCTTTTACGGTCTGGATCTCTTGCAAGTAGGCCGACAACTCCAAGCAAAAGTCAGTCAACTACCCCAAACTCAAGTAGACCGACGACTCCAAATCTTTCTAATGCAAGACGGCGGTACCCTTCAGAGCCTCGGAAATCAGCTTCAATGCGGCTACCTGCTGAAAGAGATAATGGCAGAGAGGTTGAACAATACCCCAGCAAAAGTAAACGCCTCCTCAAAGCCTTGCTTAGCCGGCGCAAGTCAAAGAAAGATGACATGTTATACACTTACTTGGATGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

36.31

Weight (kDa)

9.36

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	604, 835
Acc65I	GGTACC	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	786
AccI	GTMKAC	1 cut(s)	748
AciI	CCGC	5 cut(s)	412, 568, 671, 784, 820
AclWI	GGATC	1 cut(s)	694
AcsI	RAATTY	2 cut(s)	103, 302
AcuI	CTGAAG	1 cut(s)	777
AfaI	GTAC	3 cut(s)	137, 416, 788
AflIII	ACRYGT	2 cut(s)	338, 927
AgsI	TTSAA	6 cut(s)	100, 143, 193, 323, 816, 857
AluBI	AGCT	3 cut(s)	212, 464, 812
AluI	AGCT	3 cut(s)	212, 464, 812
Alw26I	GTCTC	3 cut(s)	92, 428, 576
AlwI	GGATC	1 cut(s)	694
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	701
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	103, 302
Asp700I	GAANNNNTTC	1 cut(s)	652
Asp718I	GGTACC	1 cut(s)	786
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	443, 648
AvaII	GGWCC	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	770, 803
BanI	GGYRCC	1 cut(s)	786
BauI	CACGAG	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	29, 583
BceAI	ACGGC	1 cut(s)	797
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	92, 428, 576
BfmI	CTRYAG	2 cut(s)	555, 597
BfuAI	ACCTGC	2 cut(s)	604, 835
BisI	GCNGC	2 cut(s)	129, 821
BlpI	GCTNAGC	1 cut(s)	899
BlsI	GCNGC	2 cut(s)	130, 822
BmcAI	AGTACT	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	448, 788
BmsI	GCATC	4 cut(s)	44, 70, 467, 514
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	899
BpuEI	CTTGAG	2 cut(s)	74, 727
BsaI	GGTCTC	2 cut(s)	428, 576
BsaJI	CCNNGG	1 cut(s)	800
Bse118I	RCCGGY	1 cut(s)	903
Bse1I	ACTGG	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	800
BseGI	GGATG	5 cut(s)	21, 277, 289, 482, 952
BseMII	CTCAG	2 cut(s)	138, 323
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	875
BseXI	GCAGC	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	866
BshFI	GGCC	1 cut(s)	703
BshNI	GGYRCC	1 cut(s)	786
BsiSI	CCGG	1 cut(s)	904
BsmAI	GTCTC	3 cut(s)	92, 428, 576
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	1 cut(s)	703
Bso31I	GGTCTC	2 cut(s)	428, 576
Bsp143I	GATC	3 cut(s)	110, 355, 686
Bsp1720I	GCTNAGC	1 cut(s)	899
BspACI	CCGC	5 cut(s)	412, 568, 671, 784, 820
BspANI	GGCC	1 cut(s)	703
BspCNI	CTCAG	2 cut(s)	137, 324
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	448, 788
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	2 cut(s)	604, 835
BspPI	GGATC	1 cut(s)	694
BspQI	GCTCTTC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	786
BspTNI	GGTCTC	2 cut(s)	428, 576
BsrFI	RCCGGY	1 cut(s)	903
BsrI	ACTGG	1 cut(s)	425
BssAI	RCCGGY	1 cut(s)	903
BssECI	CCNNGG	1 cut(s)	800
BssMI	GATC	3 cut(s)	110, 355, 686
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	5 cut(s)	226, 378, 559, 652, 681
Bst6I	CTCTTC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	905
BstDEI	CTNAG	4 cut(s)	124, 332, 484, 899
BstF5I	GGATG	5 cut(s)	21, 277, 289, 482, 952
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	3 cut(s)	113, 358, 689
BstMAI	GTCTC	3 cut(s)	92, 428, 576
BstMBI	GATC	3 cut(s)	110, 355, 686
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 527, 904
BstNSI	RCATGY	2 cut(s)	342, 931
BstSFI	CTRYAG	2 cut(s)	555, 597
BstV1I	GCAGC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	703
BtsCI	GGATG	5 cut(s)	21, 277, 289, 482, 952
BtsIMutI	CAGTG	2 cut(s)	231, 390
BveI	ACCTGC	2 cut(s)	604, 835
Cac8I	GCNNGC	1 cut(s)	905
CaiI	CAGNNNCTG	1 cut(s)	331
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	1 cut(s)	909
Cfr10I	RCCGGY	1 cut(s)	903
Cfr13I	GGNCC	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	136, 415, 787
CviAII	CATG	6 cut(s)	339, 359, 439, 443, 622, 928
CviQI	GTAC	3 cut(s)	136, 415, 787
DdeI	CTNAG	4 cut(s)	124, 332, 484, 899
DpnI	GATC	3 cut(s)	112, 357, 688
DpnII	GATC	3 cut(s)	110, 355, 686
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco31I	GGTCTC	2 cut(s)	428, 576
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	777
EcoT22I	ATGCAT	2 cut(s)	63, 444
FaeI	CATG	6 cut(s)	342, 362, 442, 446, 625, 931
FalI	AAGNNNNNCTT	2 cut(s)	882, 914
FatI	CATG	6 cut(s)	338, 358, 438, 442, 621, 927
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	748
Fnu4HI	GCNGC	2 cut(s)	129, 821
FokI	GGATG	4 cut(s)	8, 284, 296, 489
Fsp4HI	GCNGC	2 cut(s)	129, 821
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	2 cut(s)	129, 821
GsaI	CCCAGC	1 cut(s)	870
HaeIII	GGCC	1 cut(s)	703
HapII	CCGG	1 cut(s)	904
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	6 cut(s)	342, 362, 442, 446, 625, 931
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HinfI	GANTC	1 cut(s)	757
HpaII	CCGG	1 cut(s)	904
HphI	GGTGA	2 cut(s)	443, 648
Hpy166II	GTNNAC	4 cut(s)	229, 729, 749, 878
Hpy188I	TCNGA	7 cut(s)	66, 82, 516, 539, 563, 796, 804
Hpy188III	TCNNGA	3 cut(s)	344, 359, 684
Hpy8I	GTNNAC	4 cut(s)	229, 729, 749, 878
Hpy99I	CGWCG	1 cut(s)	757
HpyAV	CCTTC	1 cut(s)	801
HpyCH4III	ACNGT	5 cut(s)	226, 378, 559, 652, 681
HpyCH4V	TGCA	7 cut(s)	61, 318, 442, 480, 599, 695, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 527, 904
HpyF3I	CTNAG	4 cut(s)	124, 332, 484, 899
Hsp92II	CATG	6 cut(s)	342, 362, 442, 446, 625, 931
HspAI	GCGC	1 cut(s)	907
KpnI	GGTACC	1 cut(s)	790
KroI	GCCGGC	1 cut(s)	903
KroNI	GCCGGC	1 cut(s)	905
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	110, 355, 686
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	7 cut(s)	279, 438, 609, 669, 840, 880, 917
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	4 cut(s)	44, 70, 467, 514
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	112, 357, 688
MboI	GATC	3 cut(s)	110, 355, 686
MboII	GAAGA	3 cut(s)	67, 112, 506
MflI	RGATCY	1 cut(s)	686
MluCI	AATT	6 cut(s)	40, 103, 116, 302, 509, 635
MlyI	GAGTC	1 cut(s)	751
Mph1103I	ATGCAT	2 cut(s)	63, 444
MroNI	GCCGGC	1 cut(s)	903
MroXI	GAANNNNTTC	1 cut(s)	652
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	904
Mva1269I	GAATGC	1 cut(s)	523
MwoI	GCNNNNNNNGC	3 cut(s)	209, 527, 904
NaeI	GCCGGC	1 cut(s)	905
NdeII	GATC	3 cut(s)	110, 355, 686
NgoMIV	GCCGGC	1 cut(s)	903
NlaIII	CATG	6 cut(s)	342, 362, 442, 446, 625, 931
NlaIV	GGNNCC	2 cut(s)	448, 788
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	2 cut(s)	63, 444
NspI	RCATGY	2 cut(s)	342, 931
PagI	TCATGA	1 cut(s)	358
PciI	ACATGT	2 cut(s)	338, 927
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	523
PdiI	GCCGGC	1 cut(s)	905
PdmI	GAANNNNTTC	1 cut(s)	652
PkrI	GCNGC	2 cut(s)	130, 822
PleI	GAGTC	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	751
PscI	ACATGT	2 cut(s)	338, 927
PspFI	CCCAGC	1 cut(s)	866
PspN4I	GGNNCC	2 cut(s)	448, 788
PspPI	GGNCC	1 cut(s)	229
PsrI	GAACNNNNNNTAC	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	601
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	686
RsaI	GTAC	3 cut(s)	137, 416, 788
RsaNI	GTAC	3 cut(s)	136, 415, 787
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	129, 821
Sau3AI	GATC	3 cut(s)	110, 355, 686
Sau96I	GGNCC	1 cut(s)	229
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	1 cut(s)	751
SfaNI	GCATC	4 cut(s)	44, 70, 467, 514
SfcI	CTRYAG	2 cut(s)	555, 597
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	2 cut(s)	89, 742
SmoI	CTYRAG	2 cut(s)	89, 742
Sse9I	AATT	6 cut(s)	40, 103, 116, 302, 509, 635
SsiI	CCGC	5 cut(s)	412, 568, 671, 784, 820
SspI	AATATT	1 cut(s)	953
TaaI	ACNGT	5 cut(s)	226, 378, 559, 652, 681
TaqII	GACCGA	1 cut(s)	766
TasI	AATT	6 cut(s)	40, 103, 116, 302, 509, 635
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	823
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	231, 390
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	5 cut(s)	288, 300, 507, 513, 597
TspRI	CASTG	2 cut(s)	231, 390
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	103, 302
XceI	RCATGY	2 cut(s)	342, 931
XmiI	GTMKAC	1 cut(s)	748
XmnI	GAANNNNTTC	1 cut(s)	652
ZrmI	AGTACT	1 cut(s)	137
Zsp2I	ATGCAT	2 cut(s)	63, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.