Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

8273519 .. 8276589

Gene Structure 3071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGTGCAGCAGCTACAATGCCTATGCCCCGAGAAGCGTCTAATTACGATGAGATCTCTATGCAACAGAGCATGCTCTTCTCTGATAGTCTCAAGGATCTGAAGAATCTGAGAACACAGTTGTATTCAGCAGCTGAGTATTTCGAACTATCCTACACAAACGATGAACAAAAACAGATAGTCGTGGAGACACTGAAAGATTATGCAATAAAGGCTCTGGTGAATACAGTTGACCATTTGGGGTCTGTTACATATAAAGTAAATGACTTTGTAGATGAAAAAGTCGATGAAGTAGCAGGAACCGAACTGCGAGTATCTTGCATTGAACAGAGGCTACGGATGTGCCAAGAGTACATGGATCATGAAGGTCGTTCCCAGCAATCACTTGTGATCGACACTCCAAAGTTCCACAAGCGGTACTTCTTGCCTTCTGGTGAAATCAAAAGAGGTGGCAACCTCGCAAAGCTTAAGAATGTTGAAGGTAGTTTTGATGGAGAAGATGACTGGAACCAATTCAGAAATGCTGTTCGCGCTACAATTCGTGAAACGCCTCCACCACCTGTTAGAAAACCGATACTTCAGTCTCCCTCTCAACGGAAACCTCAACGTTCAGCAACCTTTTCGTTCTCCTCTATCGCCACCGCACCAAAGAAAGAACAAGATAAGCGAGCAGTATCACCACATCGGTTTCCGCTGCTAAGATCTGGTTCGGTTGCTATCCGACCGTCATCAATCAGCCGGCCAACAACCCCGAGCAAGAGTAGAGCGGTAACTCCAACTCCTAAACGGTATCCGTCAGAACCAAGAAGATCGGCTTCGGTTCGGGTTGCGTTCGAGAAAGAAGCTCAGAAAGAACCAGAGCATCAACAACAACCGAGCAAGAGCAAACGGCTGCTAAAGGCGCTACTTAGCCGACGCAAAACAAAGAAGGACGATACGCTCTACACTTATTTGGACGAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

36.68

Weight (kDa)

9.56

Isoelectric Point (pI)

61.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	767
AccII	CGCG	1 cut(s)	531
AciI	CCGC	4 cut(s)	415, 642, 692, 767
AclI	AACGTT	1 cut(s)	607
AclWI	GGATC	2 cut(s)	105, 366
AcoI	YGGCCR	1 cut(s)	740
AcuI	CTGAAG	2 cut(s)	122, 563
AfaI	GTAC	2 cut(s)	353, 419
AfiI	CCNNNNNNNGG	1 cut(s)	594
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	326, 479
AluBI	AGCT	4 cut(s)	14, 134, 466, 845
AluI	AGCT	4 cut(s)	14, 134, 466, 845
Alw26I	GTCTC	3 cut(s)	95, 182, 588
AlwI	GGATC	2 cut(s)	105, 366
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	2 cut(s)	30, 751
AoxI	GGCC	1 cut(s)	740
ApeKI	GCWGC	5 cut(s)	8, 11, 131, 694, 892
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	2 cut(s)	533, 904
AsuHPI	GGTGA	3 cut(s)	232, 446, 669
AsuII	TTCGAA	1 cut(s)	144
AvaI	CYCGRG	2 cut(s)	30, 751
BaeI	ACNNNNGTAYC	2 cut(s)	566, 599
BbvI	GCAGC	5 cut(s)	20, 23, 143, 681, 879
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	905
BcgI	CGANNNNNNTGC	4 cut(s)	300, 334, 603, 637
BciVI	GTATCC	1 cut(s)	801
BcoDI	GTCTC	3 cut(s)	95, 182, 588
BfoI	RGCGCY	1 cut(s)	905
BfrI	CTTAAG	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	801
BglII	AGATCT	2 cut(s)	54, 701
BisI	GCNGC	5 cut(s)	9, 12, 132, 695, 893
BlsI	GCNGC	5 cut(s)	10, 13, 133, 696, 894
BmeT110I	CYCGRG	2 cut(s)	30, 751
BmiI	GGNNCC	2 cut(s)	301, 509
BmsI	GCATC	1 cut(s)	871
Bpu14I	TTCGAA	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	763, 793
Bsc4I	CCNNNNNNNGG	1 cut(s)	594
Bse118I	RCCGGY	1 cut(s)	738
Bse1I	ACTGG	1 cut(s)	509
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	594
BseMII	CTCAG	3 cut(s)	101, 126, 860
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	619
BseXI	GCAGC	5 cut(s)	20, 23, 143, 681, 879
BseYI	CCCAGC	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	531
Bsh1285I	CGRYCG	1 cut(s)	725
BshFI	GGCC	1 cut(s)	742
BsiEI	CGRYCG	1 cut(s)	725
BsiHKCI	CYCGRG	2 cut(s)	30, 751
BsiSI	CCGG	1 cut(s)	739
BslI	CCNNNNNNNGG	1 cut(s)	594
BsmAI	GTCTC	3 cut(s)	95, 182, 588
BsnI	GGCC	1 cut(s)	742
BsoBI	CYCGRG	2 cut(s)	30, 751
Bsp119I	TTCGAA	1 cut(s)	144
Bsp143I	GATC	6 cut(s)	54, 97, 358, 390, 701, 809
BspACI	CCGC	4 cut(s)	415, 642, 692, 767
BspANI	GGCC	1 cut(s)	742
BspCNI	CTCAG	3 cut(s)	102, 127, 859
BspFNI	CGCG	1 cut(s)	531
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	301, 509
BspPI	GGATC	2 cut(s)	105, 366
BspQI	GCTCTTC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	144
BspTI	CTTAAG	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	767
BsrFI	RCCGGY	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	509
BssAI	RCCGGY	1 cut(s)	738
BssMI	GATC	6 cut(s)	54, 97, 358, 390, 701, 809
Bst4CI	ACNGT	4 cut(s)	120, 229, 726, 789
Bst6I	CTCTTC	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	467
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	74, 669, 740
BstDEI	CTNAG	5 cut(s)	110, 135, 698, 846, 908
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	1 cut(s)	531
BstH2I	RGCGCY	1 cut(s)	905
BstHHI	GCGC	2 cut(s)	533, 904
BstKTI	GATC	6 cut(s)	57, 100, 361, 393, 704, 812
BstMAI	GTCTC	3 cut(s)	95, 182, 588
BstMBI	GATC	6 cut(s)	54, 97, 358, 390, 701, 809
BstMCI	CGRYCG	1 cut(s)	725
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 530, 901
BstNSI	RCATGY	1 cut(s)	76
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	5 cut(s)	20, 23, 143, 681, 879
BstX2I	RGATCY	3 cut(s)	54, 97, 701
BstYI	RGATCY	3 cut(s)	54, 97, 701
BsuI	GTATCC	1 cut(s)	801
BsuRI	GGCC	1 cut(s)	742
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	3 cut(s)	74, 669, 740
CaiI	CAGNNNCTG	1 cut(s)	134
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	2 cut(s)	533, 904
Cfr10I	RCCGGY	1 cut(s)	738
CseI	GACGC	2 cut(s)	27, 924
Csp6I	GTAC	2 cut(s)	352, 418
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	3 cut(s)	73, 355, 362
CviQI	GTAC	2 cut(s)	352, 418
DdeI	CTNAG	5 cut(s)	110, 135, 698, 846, 908
DpnI	GATC	6 cut(s)	56, 99, 360, 392, 703, 811
DpnII	GATC	6 cut(s)	54, 97, 358, 390, 701, 809
EaeI	YGGCCR	1 cut(s)	740
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco57I	CTGAAG	2 cut(s)	122, 563
Eco88I	CYCGRG	2 cut(s)	30, 751
FaeI	CATG	3 cut(s)	76, 358, 365
FaiI	YATR	8 cut(s)	26, 62, 74, 204, 253, 255, 356, 363
FalI	AAGNNNNNCTT	4 cut(s)	404, 436, 799, 831
FatI	CATG	3 cut(s)	72, 354, 361
Fnu4HI	GCNGC	5 cut(s)	9, 12, 132, 695, 893
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	5 cut(s)	9, 12, 132, 695, 893
GlaI	GCGC	2 cut(s)	532, 903
GluI	GCNGC	5 cut(s)	9, 12, 132, 695, 893
GsaI	CCCAGC	1 cut(s)	379
HaeII	RGCGCY	1 cut(s)	905
HaeIII	GGCC	1 cut(s)	742
HapII	CCGG	1 cut(s)	739
HgaI	GACGC	2 cut(s)	27, 924
HhaI	GCGC	2 cut(s)	533, 904
Hin1II	CATG	3 cut(s)	76, 358, 365
Hin6I	GCGC	2 cut(s)	531, 902
HinP1I	GCGC	2 cut(s)	531, 902
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	739
HphI	GGTGA	3 cut(s)	232, 446, 669
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	7 cut(s)	85, 102, 111, 518, 722, 799, 849
Hpy188III	TCNNGA	3 cut(s)	362, 542, 835
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	918
HpyAV	CCTTC	4 cut(s)	359, 438, 473, 922
HpyCH4III	ACNGT	4 cut(s)	120, 229, 726, 789
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	4 cut(s)	8, 64, 206, 321
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 530, 901
HpyF3I	CTNAG	5 cut(s)	110, 135, 698, 846, 908
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	3 cut(s)	76, 358, 365
HspAI	GCGC	2 cut(s)	531, 902
KroI	GCCGGC	1 cut(s)	738
KroNI	GCCGGC	1 cut(s)	740
Kzo9I	GATC	6 cut(s)	54, 97, 358, 390, 701, 809
LguI	GCTCTTC	1 cut(s)	83
LpnPI	CCDG	9 cut(s)	203, 282, 389, 417, 490, 573, 690, 752, 870
Lsp1109I	GCAGC	5 cut(s)	20, 23, 143, 681, 879
LweI	GCATC	1 cut(s)	871
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	2 cut(s)	247, 769
MalI	GATC	6 cut(s)	56, 99, 360, 392, 703, 811
MbiI	CCGCTC	1 cut(s)	767
MboI	GATC	6 cut(s)	54, 97, 358, 390, 701, 809
MboII	GAAGA	4 cut(s)	70, 115, 509, 819
MflI	RGATCY	3 cut(s)	54, 97, 701
MluCI	AATT	3 cut(s)	43, 512, 537
MmeI	TCCRAC	2 cut(s)	745, 800
MnlI	CCTC	7 cut(s)	324, 440, 467, 561, 598, 612, 640
MroNI	GCCGGC	1 cut(s)	738
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	2 cut(s)	468, 964
MspA1I	CMGCKG	2 cut(s)	134, 694
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	1 cut(s)	739
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	3 cut(s)	212, 530, 901
NaeI	GCCGGC	1 cut(s)	740
NdeII	GATC	6 cut(s)	54, 97, 358, 390, 701, 809
NgoMIV	GCCGGC	1 cut(s)	738
NlaIII	CATG	3 cut(s)	76, 358, 365
NlaIV	GGNNCC	2 cut(s)	301, 509
NspI	RCATGY	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	76
PagI	TCATGA	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	83
PdiI	GCCGGC	1 cut(s)	740
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	5 cut(s)	10, 13, 133, 696, 894
Psp1406I	AACGTT	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	301, 509
PsrI	GAACNNNNNNTAC	2 cut(s)	318, 350
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	3 cut(s)	54, 97, 701
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	353, 419
RsaNI	GTAC	2 cut(s)	352, 418
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	468, 964
SatI	GCNGC	5 cut(s)	9, 12, 132, 695, 893
Sau3AI	GATC	6 cut(s)	54, 97, 358, 390, 701, 809
SfaNI	GCATC	1 cut(s)	871
SfuI	TTCGAA	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	92, 467
SmoI	CTYRAG	2 cut(s)	92, 467
SphI	GCATGC	1 cut(s)	76
Sse9I	AATT	3 cut(s)	43, 512, 537
SsiI	CCGC	4 cut(s)	415, 642, 692, 767
SspI	AATATT	1 cut(s)	962
TaaI	ACNGT	4 cut(s)	120, 229, 726, 789
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	4 cut(s)	144, 285, 393, 834
TasI	AATT	3 cut(s)	43, 512, 537
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	468, 964
Tru9I	TTAA	2 cut(s)	468, 964
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	5 cut(s)	8, 11, 131, 694, 892
TspDTI	ATGAA	4 cut(s)	180, 291, 303, 378
TspGWI	ACGGA	3 cut(s)	352, 610, 783
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	467
XceI	RCATGY	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.