Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

23062945 .. 23066866

Gene Structure 3922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31960.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGAACAATGACTACGCCTATCCCTGGCGTAGCGTCTAATTTTGACGAGGTTTCTATGCATCAAAGTTTGCTCTTCTCTGATAGTCTCAAGGATTTGAAGAATTTGAGATCACAGTTATACTCCGCGGCAGAGTACTTTGAACTTTCTTATACAAATGATGACCAAAAACAAACAGTGGTAGAAACATTGAAAGATTATGCCATTAAAGCTCTTGTGAATACGGTGGACCATTTGGGTTCTGTGACATATAAGGTCAATGATCTCTTGGATGAAAAAGTGGATGAAGTTTCTGGCACAGAATTTCGGGTTTCTTGCATTGAACAGAGGCTGAGGACATGTCAAGAATACATTGATCATGAGGGCCTTTCCCAACAATCATCAGTTATAGACACTCCCAAATACCACAAGCGGTACATCTTGCCAGTTGGTGAGACCATGGGGGGAGCAAACAAAACTAAATCTACATACAAAGGATGCAACTTAGATGATGAAGATGAATGGCATCAGTTTCGGAATGCTGTTCGTGCTACAATCAGTGAAACCCCACCAACTGCAGTCAGTAGAGGGCGGTCTCCATCTCCACAACCTCAAAGACCTGCAGTTTTTTCGTTTACATCTACCATGCCCAAGAAAGAATTAGATAAGCGAACAGTTTCACCTCATCGGTTTCCACTTCTACGGTCTGGTTCTCTTGCAAGTAGGCCGACGACTCCAAGCAAAAGTCGGTCAACTACCCCAAACTCAAGTAGACCGACAACTCCAAATCTTACTAATGCAAGACGACGGTACCCTTCAGAGCCTCGAAAATCAGCTTCAATGCGGCTACCTGCTGAAAGAGAGAACAGCAAAGAGGTTGAACAATATCCCAGCAAAAGTAAACGCCTCCTCAAAGCCTTGCTTAGCCGACGCAAGTCAAAGAAAGATGACATGTTATACACTTATTTGGACGAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

36.22

Weight (kDa)

9.27

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	607, 838
Acc65I	GGTACC	1 cut(s)	789
AccB1I	GGYRCC	1 cut(s)	789
AccI	GTMKAC	1 cut(s)	751
AccII	CGCG	1 cut(s)	128
AciI	CCGC	5 cut(s)	126, 128, 412, 571, 823
AcsI	RAATTY	2 cut(s)	103, 302
AcuI	CTGAAG	1 cut(s)	780
AfaI	GTAC	3 cut(s)	137, 416, 791
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflIII	ACRYGT	2 cut(s)	338, 930
AgsI	TTSAA	6 cut(s)	100, 143, 193, 323, 819, 860
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	2 cut(s)	212, 815
AluI	AGCT	2 cut(s)	212, 815
Alw26I	GTCTC	3 cut(s)	92, 428, 579
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	2 cut(s)	364, 704
ApoI	RAATTY	2 cut(s)	103, 302
Asp700I	GAANNNNTTC	1 cut(s)	655
Asp718I	GGTACC	1 cut(s)	789
AspS9I	GGNCC	2 cut(s)	229, 364
AsuHPI	GGTGA	2 cut(s)	443, 651
AvaII	GGWCC	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	773, 806
BanI	GGYRCC	1 cut(s)	789
BbvCI	CCTCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	586
BcgI	CGANNNNNNTGC	4 cut(s)	494, 528, 591, 625
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	92, 428, 579
BfmI	CTRYAG	2 cut(s)	555, 600
BfuAI	ACCTGC	2 cut(s)	607, 838
BisI	GCNGC	2 cut(s)	129, 824
BlpI	GCTNAGC	1 cut(s)	902
BlsI	GCNGC	2 cut(s)	130, 825
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	229, 364
BmiI	GGNNCC	1 cut(s)	791
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	3 cut(s)	70, 467, 514
BoxI	GACNNNNGTC	1 cut(s)	913
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	902
BpuEI	CTTGAG	2 cut(s)	74, 730
BsaI	GGTCTC	2 cut(s)	428, 579
BsaJI	CCNNGG	3 cut(s)	25, 126, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	25, 126, 438
BseGI	GGATG	3 cut(s)	277, 289, 482
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	878
BseYI	CCCAGC	1 cut(s)	869
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	366, 706
BshNI	GGYRCC	1 cut(s)	789
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	3 cut(s)	92, 428, 579
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	366, 706
Bso31I	GGTCTC	2 cut(s)	428, 579
Bsp143I	GATC	3 cut(s)	110, 262, 355
Bsp1720I	GCTNAGC	1 cut(s)	902
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	5 cut(s)	126, 128, 412, 571, 823
BspANI	GGCC	2 cut(s)	366, 706
BspCNI	CTCAG	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	791
BspMAI	CTGCAG	2 cut(s)	559, 604
BspMI	ACCTGC	2 cut(s)	607, 838
BspQI	GCTCTTC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	789
BspTNI	GGTCTC	2 cut(s)	428, 579
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	25, 126, 438
BssMI	GATC	3 cut(s)	110, 262, 355
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	6 cut(s)	117, 178, 226, 655, 684, 789
Bst6I	CTCTTC	1 cut(s)	80
BstDEI	CTNAG	3 cut(s)	332, 484, 902
BstDSI	CCRYGG	2 cut(s)	126, 438
BstF5I	GGATG	3 cut(s)	277, 289, 482
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	3 cut(s)	113, 265, 358
BstMAI	GTCTC	3 cut(s)	92, 428, 579
BstMBI	GATC	3 cut(s)	110, 262, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 527
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	2 cut(s)	342, 934
BstPAI	GACNNNNGTC	1 cut(s)	913
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	2 cut(s)	555, 600
BstUI	CGCG	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	366, 706
BtgI	CCRYGG	2 cut(s)	126, 438
BtsCI	GGATG	3 cut(s)	277, 289, 482
BtsIMutI	CAGTG	2 cut(s)	183, 544
BveI	ACCTGC	2 cut(s)	607, 838
CaiI	CAGNNNCTG	1 cut(s)	331
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	229, 364
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	2 cut(s)	24, 918
Csp6I	GTAC	3 cut(s)	136, 415, 790
CviAII	CATG	5 cut(s)	339, 359, 439, 625, 931
CviJI	RGCY	9 cut(s)	212, 331, 366, 706, 802, 815, 826, 896, 906
CviKI_1	RGCY	9 cut(s)	212, 331, 366, 706, 802, 815, 826, 896, 906
CviQI	GTAC	3 cut(s)	136, 415, 790
DdeI	CTNAG	3 cut(s)	332, 484, 902
DpnI	GATC	3 cut(s)	112, 264, 357
DpnII	GATC	3 cut(s)	110, 262, 355
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	438
Eco31I	GGTCTC	2 cut(s)	428, 579
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	5 cut(s)	342, 362, 442, 628, 934
FalI	AAGNNNNNCTT	2 cut(s)	885, 917
FatI	CATG	5 cut(s)	338, 358, 438, 624, 930
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	751
Fnu4HI	GCNGC	2 cut(s)	129, 824
FokI	GGATG	3 cut(s)	284, 296, 489
Fsp4HI	GCNGC	2 cut(s)	129, 824
GluI	GCNGC	2 cut(s)	129, 824
GsaI	CCCAGC	1 cut(s)	873
HaeIII	GGCC	2 cut(s)	366, 706
HgaI	GACGC	2 cut(s)	24, 918
Hin1II	CATG	5 cut(s)	342, 362, 442, 628, 934
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	1 cut(s)	712
HphI	GGTGA	2 cut(s)	443, 651
Hpy166II	GTNNAC	5 cut(s)	229, 615, 732, 752, 881
Hpy188I	TCNGA	3 cut(s)	82, 516, 799
Hpy188III	TCNNGA	2 cut(s)	344, 359
Hpy8I	GTNNAC	5 cut(s)	229, 615, 732, 752, 881
Hpy99I	CGWCG	3 cut(s)	712, 789, 912
HpyAV	CCTTC	1 cut(s)	804
HpyCH4III	ACNGT	6 cut(s)	117, 178, 226, 655, 684, 789
HpyCH4V	TGCA	7 cut(s)	61, 318, 480, 557, 602, 698, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 527
HpyF3I	CTNAG	3 cut(s)	332, 484, 902
Hsp92II	CATG	5 cut(s)	342, 362, 442, 628, 934
KpnI	GGTACC	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	355
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	110, 262, 355
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	8 cut(s)	12, 39, 279, 438, 612, 672, 843, 883
LweI	GCATC	3 cut(s)	70, 467, 514
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	112, 264, 357
MboI	GATC	3 cut(s)	110, 262, 355
MboII	GAAGA	3 cut(s)	67, 112, 506
MluCI	AATT	4 cut(s)	40, 103, 302, 638
MlyI	GAGTC	1 cut(s)	706
Mph1103I	ATGCAT	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	655
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	209, 527
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	3 cut(s)	110, 262, 355
NlaIII	CATG	5 cut(s)	342, 362, 442, 628, 934
NlaIV	GGNNCC	1 cut(s)	791
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	63
NspI	RCATGY	2 cut(s)	342, 934
PagI	TCATGA	1 cut(s)	358
PciI	ACATGT	2 cut(s)	338, 930
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	655
PkrI	GCNGC	2 cut(s)	130, 825
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PscI	ACATGT	2 cut(s)	338, 930
PshAI	GACNNNNGTC	1 cut(s)	913
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	791
PspPI	GGNCC	2 cut(s)	229, 364
PsrI	GAACNNNNNNTAC	1 cut(s)	30
PstI	CTGCAG	2 cut(s)	559, 604
PstNI	CAGNNNCTG	1 cut(s)	331
RsaI	GTAC	3 cut(s)	137, 416, 791
RsaNI	GTAC	3 cut(s)	136, 415, 790
SacII	CCGCGG	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	129, 824
Sau3AI	GATC	3 cut(s)	110, 262, 355
Sau96I	GGNCC	2 cut(s)	229, 364
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	9 cut(s)	54, 214, 258, 592, 601, 664, 817, 832, 858
SfaNI	GCATC	3 cut(s)	70, 467, 514
SfcI	CTRYAG	2 cut(s)	555, 600
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	2 cut(s)	89, 745
SmoI	CTYRAG	2 cut(s)	89, 745
Sse9I	AATT	4 cut(s)	40, 103, 302, 638
SsiI	CCGC	5 cut(s)	126, 128, 412, 571, 823
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	6 cut(s)	117, 178, 226, 655, 684, 789
TaqI	TCGA	1 cut(s)	805
TaqII	GACCGA	2 cut(s)	717, 769
TasI	AATT	4 cut(s)	40, 103, 302, 638
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	2 cut(s)	131, 826
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	183, 544
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	288, 300, 507, 513
TspRI	CASTG	2 cut(s)	183, 544
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	103, 302
XceI	RCATGY	2 cut(s)	342, 934
XmiI	GTMKAC	1 cut(s)	751
XmnI	GAANNNNTTC	1 cut(s)	655
ZrmI	AGTACT	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.