Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

67187713 .. 67191430

Gene Structure 3718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG451900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGAACAATGGCTACGCCCATCCCTCGTGTAGCATCTAATTTTGATGAGGTTTCTATGCATCAGAGCTTGCTCTTCTCTGATAGTCTCAAGGATTTGAAGAATTTGAGATCACAATTATACTCAGCAGCAGAGTACTTTGAACTTTCTTATACAAATGATGACCAAAAACATATAGTGGTAGAAACATTGAAAGATTATGCCATTAAAGCTCTTGTGAATACAGTGGACCATTTGGGTTCTGTGACATATAAGGTCAATGACCTCTTGGATGAAAAAGTGGATGAAGTTTCTGGCACAGAATTTCGGGTTTCTTGCATTGAACAGAGGCTGAGGACATGTCAAGAATATATTGATCATGAGGGTCTTTCCCAACAGTCATCAGTGATAGATACTCCCAAATACCACAAGCGGTACATCTTGCCAGTTGGTGAGACCATGCGTGGAGCCAACAAAGCTAAATCTAAATACAAAGGATGCAACTTAGATGACGAAGATGAATGGCATCAATTTCGGAATGCTGTTCGTGCTACAATAAGAGAAACCCCACCAACTACAGTCAGTAGAGGGCGGTCTCCATCTCCACAACCTCAAAGACCTGCAGTTTTTTCATTTACATCTACCATGCCCAAGAAAGAATTAGATAAGCGAACAGTTTCACCTCATCGGTTTCCGCTTTTGCGGTCTGGATCTCTTGCAAGTAGGCCGACAACTCCAAGCAAAAGTCAGTCAACTACCCCAAACTCAAGTAGACCGACGACTCCAAATCTTTCTAATGCAAGACGGCGGTACCCTTCAGAGCCTCGAAAATCAGCTTCAATGCGGCTACCGGCTGAAAGAGATAATGGCAGAGAGGTTGAACAATACCCCAGCAAAAGTAAACGCCTCCTCAAAGCCTTGCTTAGCCGGCGCAAGTCAAAGAAAGATGACATGTTATACACTTACTTGGATGAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

36.44

Weight (kDa)

9.47

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
Acc65I	GGTACC	1 cut(s)	789
AccB1I	GGYRCC	1 cut(s)	789
AccI	GTMKAC	1 cut(s)	751
AciI	CCGC	6 cut(s)	412, 571, 674, 682, 787, 823
AclWI	GGATC	1 cut(s)	697
AcsI	RAATTY	2 cut(s)	103, 302
AcuI	CTGAAG	1 cut(s)	780
AfaI	GTAC	3 cut(s)	137, 416, 791
AflIII	ACRYGT	2 cut(s)	338, 930
AgsI	TTSAA	6 cut(s)	100, 143, 193, 323, 819, 860
AluBI	AGCT	4 cut(s)	69, 212, 458, 815
AluI	AGCT	4 cut(s)	69, 212, 458, 815
Alw26I	GTCTC	3 cut(s)	92, 428, 579
AlwI	GGATC	1 cut(s)	697
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	704
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	103, 302
Asp700I	GAANNNNTTC	1 cut(s)	655
Asp718I	GGTACC	1 cut(s)	789
AspLEI	GCGC	1 cut(s)	912
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	443, 651
AvaII	GGWCC	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	773, 806
BanI	GGYRCC	1 cut(s)	789
BauI	CACGAG	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	29, 586
BceAI	ACGGC	1 cut(s)	800
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	92, 428, 579
BfmI	CTRYAG	2 cut(s)	555, 600
BfuAI	ACCTGC	1 cut(s)	607
BisI	GCNGC	2 cut(s)	129, 824
BlpI	GCTNAGC	1 cut(s)	902
BlsI	GCNGC	2 cut(s)	130, 825
BmcAI	AGTACT	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	448, 791
BmsI	GCATC	4 cut(s)	44, 70, 467, 514
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	902
BpuEI	CTTGAG	2 cut(s)	74, 730
BsaI	GGTCTC	2 cut(s)	428, 579
Bse118I	RCCGGY	2 cut(s)	829, 906
Bse1I	ACTGG	1 cut(s)	425
BseGI	GGATG	5 cut(s)	21, 277, 289, 482, 955
BseMII	CTCAG	2 cut(s)	138, 323
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	869
BshFI	GGCC	1 cut(s)	706
BshNI	GGYRCC	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	830, 907
BsmAI	GTCTC	3 cut(s)	92, 428, 579
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	1 cut(s)	706
Bso31I	GGTCTC	2 cut(s)	428, 579
Bsp143I	GATC	3 cut(s)	110, 355, 689
Bsp1720I	GCTNAGC	1 cut(s)	902
BspACI	CCGC	6 cut(s)	412, 571, 674, 682, 787, 823
BspANI	GGCC	1 cut(s)	706
BspCNI	CTCAG	2 cut(s)	137, 324
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	448, 791
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	1 cut(s)	697
BspQI	GCTCTTC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	789
BspTNI	GGTCTC	2 cut(s)	428, 579
BsrFI	RCCGGY	2 cut(s)	829, 906
BsrI	ACTGG	1 cut(s)	425
BssAI	RCCGGY	2 cut(s)	829, 906
BssMI	GATC	3 cut(s)	110, 355, 689
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	4 cut(s)	226, 378, 559, 655
Bst6I	CTCTTC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	71, 908
BstDEI	CTNAG	4 cut(s)	124, 332, 484, 902
BstF5I	GGATG	5 cut(s)	21, 277, 289, 482, 955
BstHHI	GCGC	1 cut(s)	912
BstKTI	GATC	3 cut(s)	113, 358, 692
BstMAI	GTCTC	3 cut(s)	92, 428, 579
BstMBI	GATC	3 cut(s)	110, 355, 689
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 455, 527, 907
BstNSI	RCATGY	2 cut(s)	342, 934
BstSFI	CTRYAG	2 cut(s)	555, 600
BstV1I	GCAGC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
BsuRI	GGCC	1 cut(s)	706
BtsCI	GGATG	5 cut(s)	21, 277, 289, 482, 955
BtsIMutI	CAGTG	2 cut(s)	231, 390
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	2 cut(s)	71, 908
CaiI	CAGNNNCTG	1 cut(s)	331
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	1 cut(s)	912
Cfr10I	RCCGGY	2 cut(s)	829, 906
Cfr13I	GGNCC	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	136, 415, 790
CviAII	CATG	5 cut(s)	339, 359, 439, 625, 931
CviQI	GTAC	3 cut(s)	136, 415, 790
DdeI	CTNAG	4 cut(s)	124, 332, 484, 902
DpnI	GATC	3 cut(s)	112, 357, 691
DpnII	GATC	3 cut(s)	110, 355, 689
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco31I	GGTCTC	2 cut(s)	428, 579
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	780
EcoT22I	ATGCAT	1 cut(s)	63
FaeI	CATG	5 cut(s)	342, 362, 442, 628, 934
FalI	AAGNNNNNCTT	2 cut(s)	885, 917
FatI	CATG	5 cut(s)	338, 358, 438, 624, 930
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	751
Fnu4HI	GCNGC	2 cut(s)	129, 824
FokI	GGATG	4 cut(s)	8, 284, 296, 489
Fsp4HI	GCNGC	2 cut(s)	129, 824
GlaI	GCGC	1 cut(s)	911
GluI	GCNGC	2 cut(s)	129, 824
GsaI	CCCAGC	1 cut(s)	873
HaeIII	GGCC	1 cut(s)	706
HapII	CCGG	2 cut(s)	830, 907
HhaI	GCGC	1 cut(s)	912
Hin1II	CATG	5 cut(s)	342, 362, 442, 628, 934
Hin6I	GCGC	1 cut(s)	910
HinP1I	GCGC	1 cut(s)	910
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	1 cut(s)	760
HpaII	CCGG	2 cut(s)	830, 907
HphI	GGTGA	2 cut(s)	443, 651
Hpy166II	GTNNAC	4 cut(s)	229, 732, 752, 881
Hpy188I	TCNGA	4 cut(s)	66, 82, 516, 799
Hpy188III	TCNNGA	3 cut(s)	344, 359, 687
Hpy8I	GTNNAC	4 cut(s)	229, 732, 752, 881
Hpy99I	CGWCG	1 cut(s)	760
HpyAV	CCTTC	1 cut(s)	804
HpyCH4III	ACNGT	4 cut(s)	226, 378, 559, 655
HpyCH4V	TGCA	6 cut(s)	61, 318, 480, 602, 698, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 455, 527, 907
HpyF3I	CTNAG	4 cut(s)	124, 332, 484, 902
Hsp92II	CATG	5 cut(s)	342, 362, 442, 628, 934
HspAI	GCGC	1 cut(s)	910
KpnI	GGTACC	1 cut(s)	793
KroI	GCCGGC	1 cut(s)	906
KroNI	GCCGGC	1 cut(s)	908
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	110, 355, 689
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	7 cut(s)	279, 438, 612, 672, 843, 883, 920
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	4 cut(s)	44, 70, 467, 514
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	112, 357, 691
MboI	GATC	3 cut(s)	110, 355, 689
MboII	GAAGA	3 cut(s)	67, 112, 506
MflI	RGATCY	1 cut(s)	689
MluCI	AATT	6 cut(s)	40, 103, 116, 302, 509, 638
MlyI	GAGTC	1 cut(s)	754
Mph1103I	ATGCAT	1 cut(s)	63
MroNI	GCCGGC	1 cut(s)	906
MroXI	GAANNNNTTC	1 cut(s)	655
MseI	TTAA	1 cut(s)	207
MspI	CCGG	2 cut(s)	830, 907
Mva1269I	GAATGC	1 cut(s)	523
MwoI	GCNNNNNNNGC	4 cut(s)	209, 455, 527, 907
NaeI	GCCGGC	1 cut(s)	908
NdeII	GATC	3 cut(s)	110, 355, 689
NgoMIV	GCCGGC	1 cut(s)	906
NlaIII	CATG	5 cut(s)	342, 362, 442, 628, 934
NlaIV	GGNNCC	2 cut(s)	448, 791
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	63
NspI	RCATGY	2 cut(s)	342, 934
PagI	TCATGA	1 cut(s)	358
PciI	ACATGT	2 cut(s)	338, 930
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	523
PdiI	GCCGGC	1 cut(s)	908
PdmI	GAANNNNTTC	1 cut(s)	655
PkrI	GCNGC	2 cut(s)	130, 825
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
PscI	ACATGT	2 cut(s)	338, 930
PspFI	CCCAGC	1 cut(s)	869
PspN4I	GGNNCC	2 cut(s)	448, 791
PspPI	GGNCC	1 cut(s)	229
PsrI	GAACNNNNNNTAC	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	689
RsaI	GTAC	3 cut(s)	137, 416, 791
RsaNI	GTAC	3 cut(s)	136, 415, 790
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	129, 824
Sau3AI	GATC	3 cut(s)	110, 355, 689
Sau96I	GGNCC	1 cut(s)	229
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	1 cut(s)	754
SfaNI	GCATC	4 cut(s)	44, 70, 467, 514
SfcI	CTRYAG	2 cut(s)	555, 600
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	2 cut(s)	89, 745
SmoI	CTYRAG	2 cut(s)	89, 745
Sse9I	AATT	6 cut(s)	40, 103, 116, 302, 509, 638
SsiI	CCGC	6 cut(s)	412, 571, 674, 682, 787, 823
TaaI	ACNGT	4 cut(s)	226, 378, 559, 655
TaqI	TCGA	1 cut(s)	805
TaqII	GACCGA	1 cut(s)	769
TasI	AATT	6 cut(s)	40, 103, 116, 302, 509, 638
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	826
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	231, 390
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	288, 300, 513, 600
TspRI	CASTG	2 cut(s)	231, 390
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	103, 302
XceI	RCATGY	2 cut(s)	342, 934
XmiI	GTMKAC	1 cut(s)	751
XmnI	GAANNNNTTC	1 cut(s)	655
ZrmI	AGTACT	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.