Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Reverse (-)

52771742 .. 52772443

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0428500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGCGTCGAACTAGCTTCGGCGTCGTTTTTCTCCTCCTGTATTTTGTGTGGTTGGGTCAAAGCTTAGCTCCGATTTCGATCGGCCCTCTCCGATCCCTTACGGTAGATCTGACCCTAAGGGAGAAGATCTATACTGGGGAGTGCTTGGCCTCTTGGGCGGCTAAGGATGGTGGGACAGCATATGCTGTATGGATGTGGCCTCCAGGCGGTTTGGCTCGACGGTGGAAAATAGGTGTTGGTGGATTCACTCTGTCCGTTCCTGGCTTTGCTACTGACGTGCTTGGGTTGCGAACGTCGAGTTGTGGAAATAAAGACCCAGTTGGGGTGGCAGCCTGGCTTAGGAAGAGTGATGGTGGTACAGGAGAACCCTGGCTGAGGCTGATGGCTGAGATGGACAACGATGCTGGGCTGGGCATCAACGCTGACTCTAAGTTGAGACAAGATTGGGTGCATAGAGCAATTGGGCAGCCCAATATCTGCAGGAGAACCAAGGGTGCAATTTATGGTAGGGCTATTGTGAGCTCTATCATAAAGAATGTTGCTACAATGAACCAACCTAGAGGAAGTAATACTGATTCCGACGAGAAGACTACAAATAAGAGCCGAAAGAGCGACCTGATGCCGAGGTTGTTGGCTACTGAAGAGGTTGAGAAGGATGCTGGTTCCAACCCTCCGTGGAAGGAACTAACACTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.38

Weight (kDa)

9.57

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AciI	CCGC	2 cut(s)	161, 210
AclWI	GGATC	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	4 cut(s)	209, 325, 342, 378
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	4 cut(s)	205, 262, 335, 371
AluBI	AGCT	4 cut(s)	18, 66, 71, 525
AluI	AGCT	4 cut(s)	18, 66, 71, 525
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	3 cut(s)	85, 150, 200
ApeKI	GCWGC	2 cut(s)	332, 469
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	86
AxyI	CCTNAGG	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	527
BbvCI	CCTCAGC	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	344, 481
BccI	CCATC	4 cut(s)	164, 347, 379, 388
BciT130I	CCWGG	4 cut(s)	207, 264, 337, 373
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	2 cut(s)	15, 561
BfmI	CTRYAG	1 cut(s)	481
BglI	GCCNNNNNGGC	1 cut(s)	158
BglII	AGATCT	2 cut(s)	109, 129
BisI	GCNGC	3 cut(s)	162, 333, 470
BlpI	GCTNAGC	1 cut(s)	67
BlsI	GCNGC	3 cut(s)	163, 334, 471
Bme1390I	CCNGG	4 cut(s)	207, 264, 337, 373
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	4 cut(s)	207, 264, 337, 373
BmrI	ACTGGG	2 cut(s)	147, 314
BmsI	GCATC	4 cut(s)	394, 426, 612, 649
BmuI	ACTGGG	2 cut(s)	147, 314
BpiI	GAAGAC	1 cut(s)	596
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	3 cut(s)	165, 341, 377
Bpu1102I	GCTNAGC	1 cut(s)	67
BsaBI	GATNNNNATC	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	4 cut(s)	371, 492, 626, 677
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 325, 342, 378
Bse1I	ACTGG	2 cut(s)	142, 320
Bse21I	CCTNAGG	1 cut(s)	119
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	4 cut(s)	207, 264, 337, 373
BseDI	CCNNGG	4 cut(s)	371, 492, 626, 677
BseGI	GGATG	3 cut(s)	175, 201, 664
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	4 cut(s)	209, 325, 342, 378
BseMII	CTCAG	2 cut(s)	368, 381
BseNI	ACTGG	2 cut(s)	142, 320
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	344, 481
BseYI	CCCAGC	2 cut(s)	407, 412
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	87, 152, 202
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	4 cut(s)	209, 325, 342, 378
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	87, 152, 202
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	4 cut(s)	81, 95, 109, 129
Bsp1720I	GCTNAGC	1 cut(s)	67
BspACI	CCGC	2 cut(s)	161, 210
BspANI	GGCC	3 cut(s)	87, 152, 202
BspCNI	CTCAG	2 cut(s)	369, 382
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	667
BspMAI	CTGCAG	1 cut(s)	485
BspPI	GGATC	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	142, 320
BssECI	CCNNGG	4 cut(s)	371, 492, 626, 677
BssMI	GATC	4 cut(s)	81, 95, 109, 129
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	4 cut(s)	207, 264, 337, 373
Bst4CI	ACNGT	2 cut(s)	106, 225
Bst6I	CTCTTC	2 cut(s)	341, 639
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	7 cut(s)	67, 119, 165, 341, 377, 390, 432
BstDSI	CCRYGG	1 cut(s)	677
BstENI	CCTNNNNNAGG	2 cut(s)	340, 376
BstF5I	GGATG	3 cut(s)	175, 201, 664
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	84, 98, 112, 132
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	81, 95, 109, 129
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 289, 612
BstNI	CCWGG	4 cut(s)	207, 264, 337, 373
BstSCI	CCNGG	4 cut(s)	205, 262, 335, 371
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	344, 481
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	2 cut(s)	109, 129
BstYI	RGATCY	2 cut(s)	109, 129
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	87, 152, 202
BtgI	CCRYGG	1 cut(s)	677
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	3 cut(s)	175, 201, 664
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	360
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	7 cut(s)	67, 119, 165, 341, 377, 390, 432
DpnI	GATC	4 cut(s)	83, 97, 111, 131
DpnII	GATC	4 cut(s)	81, 95, 109, 129
Eam1104I	CTCTTC	2 cut(s)	341, 639
EarI	CTCTTC	2 cut(s)	341, 639
Ecl136II	GAGCTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	527
Eco53kI	GAGCTC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	663
Eco81I	CCTNAGG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	525
EcoNI	CCTNNNNNAGG	2 cut(s)	340, 376
EcoRII	CCWGG	4 cut(s)	205, 262, 335, 371
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	492
FaiI	YATR	7 cut(s)	135, 184, 186, 193, 456, 507, 533
FaqI	GGGAC	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	162, 333, 470
FokI	GGATG	3 cut(s)	182, 208, 671
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	162, 333, 470
FspBI	CTAG	2 cut(s)	15, 561
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	162, 333, 470
GsaI	CCCAGC	2 cut(s)	411, 416
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	87, 152, 202
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	3 cut(s)	246, 428, 578
Hpy188I	TCNGA	4 cut(s)	75, 95, 114, 583
Hpy99I	CGWCG	5 cut(s)	12, 29, 225, 301, 587
HpyAV	CCTTC	2 cut(s)	649, 676
HpyCH4III	ACNGT	2 cut(s)	106, 225
HpyCH4IV	ACGT	2 cut(s)	279, 296
HpyCH4V	TGCA	3 cut(s)	454, 483, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 289, 612
HpyF3I	CTNAG	7 cut(s)	67, 119, 165, 341, 377, 390, 432
HpySE526I	ACGT	2 cut(s)	279, 296
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	81, 95, 109, 129
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	2 cut(s)	344, 481
LweI	GCATC	4 cut(s)	394, 426, 612, 649
MaeI	CTAG	2 cut(s)	15, 561
MaeII	ACGT	2 cut(s)	279, 296
MalI	GATC	4 cut(s)	83, 97, 111, 131
MboI	GATC	4 cut(s)	81, 95, 109, 129
MboII	GAAGA	4 cut(s)	139, 358, 601, 656
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	2 cut(s)	109, 129
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	2 cut(s)	462, 501
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	2 cut(s)	606, 693
MnlI	CCTC	9 cut(s)	47, 99, 163, 213, 372, 557, 621, 640, 684
MseI	TTAA	1 cut(s)	700
MspR9I	CCNGG	4 cut(s)	207, 264, 337, 373
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	4 cut(s)	207, 264, 337, 373
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	158, 289, 612
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	4 cut(s)	81, 95, 109, 129
NlaIV	GGNNCC	1 cut(s)	667
NmeAIII	GCCGAG	1 cut(s)	651
PfeI	GAWTC	2 cut(s)	246, 578
PkrI	GCNGC	3 cut(s)	163, 334, 471
Ple19I	CGATCG	1 cut(s)	84
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	527
Psp6I	CCWGG	4 cut(s)	205, 262, 335, 371
PspFI	CCCAGC	2 cut(s)	407, 412
PspGI	CCWGG	4 cut(s)	205, 262, 335, 371
PspN4I	GGNNCC	1 cut(s)	667
PspPI	GGNCC	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	109, 129
PvuI	CGATCG	1 cut(s)	84
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	700
SatI	GCNGC	3 cut(s)	162, 333, 470
Sau3AI	GATC	4 cut(s)	81, 95, 109, 129
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	4 cut(s)	207, 264, 337, 373
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	4 cut(s)	394, 426, 612, 649
SfcI	CTRYAG	1 cut(s)	481
Sse9I	AATT	2 cut(s)	462, 501
SsiI	CCGC	2 cut(s)	161, 210
SspMI	CTAG	2 cut(s)	15, 561
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	4 cut(s)	205, 262, 335, 371
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	106, 225
TaiI	ACGT	2 cut(s)	282, 299
TaqI	TCGA	4 cut(s)	10, 80, 220, 299
TasI	AATT	2 cut(s)	462, 501
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	246, 578
Tru1I	TTAA	1 cut(s)	700
Tru9I	TTAA	1 cut(s)	700
TseI	GCWGC	2 cut(s)	332, 469
TspDTI	ATGAA	1 cut(s)	566
TspGWI	ACGGA	2 cut(s)	247, 666
XagI	CCTNNNNNAGG	2 cut(s)	340, 376
XspI	CTAG	2 cut(s)	15, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.