Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

35466229 .. 35470061

Gene Structure 3833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1293000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCTTGTGGGAACGATGCCTACCTCTACAATGCCCATCCCACGGGTAGCATCTAATTTTGATGAGGTTTCTATGCATCAGAGCTTGCTTTTCTCTGATAGTCTCAAGGATTTGAAGAATTTGAGAAGACAATTGTACTCAGCAGCAGAGTACTTTGAACTGTCATACACAAATGATGACCAGAAACAAATAGTGGTAGAAACATTGAAAGATTATGCCATTAAAGCTCTCGTGAATACGGTGGATCATTTGGGTTCTGTTACATATAAGGTTAACGATCTCTTTGATGAAAAGGTGGATGAAGTTTCTGGCACAGAGTTTCGGGTATCTTGCATTGAACAGAGGATAAGGACATGTCAAGAATACATCGATCATGAGGGTCTTTCTCAACAGTCGTCGATTATAGATACTCCTAAATACCACAAGCGGTACATCTTTCCAGTTAGTGAGACCATGCACGGAGGCAGCAGAACTAAATCCAAATACCAAGAATGCAACCTAGATGATGAAGACGAATGGCATCAATTTCGGAATGCTGTTCGCGCTACAATTAGAGAGACCCCACCATCTACTGTCAGCAAAGGGCGTTCTCCGTCTCCTTCTCCACAACCTCCCCGGCGACCTGGAGTTTTTTCGTTTACGTCTACCATGCCCAAAAAAGAATTAGACAAGCGAACAGTTTCACCTCATCGATTTCCACTTTTACGGTCTGGATCTCTTGCAAGGAGGCCAACGACCCCAAACAAAAGTCGGTCAACTACCCCGAACTCAAGTAGGCCGACAACTCCAAATCCTGCTAATGCCAGACGACGGTACCCTTCGGAGCCTCGGAAGTCAGCTTCAATGCGATTACCTGCTGAAAGAGATAATGGCAGAGAGGTTGAACAATACCCCAGCAAAAGTAAACGGCTACTCAAGGCCTTGCTTAGCCGGCGAAAGTCGAAGAAAGATGACATGTTATACACTTACTTGGATGAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.59

Weight (kDa)

9.54

Isoelectric Point (pI)

65.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	862
Acc65I	GGTACC	1 cut(s)	813
AccB1I	GGYRCC	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	644
AccII	CGCG	1 cut(s)	543
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	2 cut(s)	252, 721
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	4 cut(s)	137, 152, 431, 815
AfiI	CCNNNNNNNGG	2 cut(s)	42, 810
AflIII	ACRYGT	2 cut(s)	353, 954
AgsI	TTSAA	6 cut(s)	115, 158, 208, 338, 843, 884
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	3 cut(s)	84, 227, 839
AluI	AGCT	3 cut(s)	84, 227, 839
Alw26I	GTCTC	4 cut(s)	107, 443, 551, 600
AlwI	GGATC	2 cut(s)	252, 721
AoxI	GGCC	3 cut(s)	728, 776, 918
ApeKI	GCWGC	2 cut(s)	143, 465
ApoI	RAATTY	1 cut(s)	118
Asp700I	GAANNNNTTC	1 cut(s)	679
Asp718I	GGTACC	1 cut(s)	813
AspLEI	GCGC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	1 cut(s)	675
BaeI	ACNNNNGTAYC	2 cut(s)	797, 830
BanI	GGYRCC	1 cut(s)	813
BauI	CACGAG	1 cut(s)	230
BbsI	GAAGAC	2 cut(s)	133, 516
BbvI	GCAGC	2 cut(s)	155, 477
BccI	CCATC	2 cut(s)	44, 574
BceAI	ACGGC	1 cut(s)	923
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	1 cut(s)	624
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	4 cut(s)	107, 443, 551, 600
BfaI	CTAG	2 cut(s)	500, 982
BfuAI	ACCTGC	1 cut(s)	862
BisI	GCNGC	2 cut(s)	144, 466
BlpI	GCTNAGC	1 cut(s)	926
BlsI	GCNGC	2 cut(s)	145, 467
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	616, 624
BmiI	GGNNCC	2 cut(s)	815, 825
BmrFI	CCNGG	2 cut(s)	616, 624
BmsI	GCATC	4 cut(s)	6, 59, 85, 529
BpiI	GAAGAC	2 cut(s)	133, 516
BpmI	CTGGAG	1 cut(s)	645
Bpu1102I	GCTNAGC	1 cut(s)	926
BpuEI	CTTGAG	3 cut(s)	89, 754, 899
BpuMI	CCSGG	1 cut(s)	616
Bsa29I	ATCGAT	2 cut(s)	369, 691
BsaI	GGTCTC	2 cut(s)	443, 551
BsaJI	CCNNGG	3 cut(s)	41, 614, 827
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 810
Bse118I	RCCGGY	1 cut(s)	930
Bse1I	ACTGG	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	624
BseCI	ATCGAT	2 cut(s)	369, 691
BseDI	CCNNGG	3 cut(s)	41, 614, 827
BseGI	GGATG	3 cut(s)	36, 304, 979
BseLI	CCNNNNNNNGG	2 cut(s)	42, 810
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	155, 477
BseYI	CCCAGC	1 cut(s)	893
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	3 cut(s)	730, 778, 920
BshNI	GGYRCC	1 cut(s)	813
BshVI	ATCGAT	2 cut(s)	369, 691
BsiSI	CCGG	2 cut(s)	616, 931
BslI	CCNNNNNNNGG	2 cut(s)	42, 810
BsmAI	GTCTC	4 cut(s)	107, 443, 551, 600
BsmBI	CGTCTC	1 cut(s)	600
BsmI	GAATGC	2 cut(s)	497, 538
BsnI	GGCC	3 cut(s)	730, 778, 920
Bso31I	GGTCTC	2 cut(s)	443, 551
Bsp143I	GATC	4 cut(s)	244, 277, 370, 713
Bsp1720I	GCTNAGC	1 cut(s)	926
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	3 cut(s)	730, 778, 920
BspCNI	CTCAG	1 cut(s)	152
BspDI	ATCGAT	2 cut(s)	369, 691
BspFNI	CGCG	1 cut(s)	543
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	815, 825
BspMI	ACCTGC	1 cut(s)	862
BspPI	GGATC	2 cut(s)	252, 721
BspT107I	GGYRCC	1 cut(s)	813
BspTNI	GGTCTC	2 cut(s)	443, 551
BsrFI	RCCGGY	1 cut(s)	930
BsrI	ACTGG	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	930
BssECI	CCNNGG	3 cut(s)	41, 614, 827
BssMI	GATC	4 cut(s)	244, 277, 370, 713
BssSI	CACGAG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	7 cut(s)	162, 241, 393, 574, 679, 708, 813
BstC8I	GCNNGC	2 cut(s)	86, 932
BstDEI	CTNAG	2 cut(s)	139, 926
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	3 cut(s)	36, 304, 979
BstFNI	CGCG	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	4 cut(s)	247, 280, 373, 716
BstMAI	GTCTC	4 cut(s)	107, 443, 551, 600
BstMBI	GATC	4 cut(s)	244, 277, 370, 713
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 542, 931
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	2 cut(s)	357, 958
BstSCI	CCNGG	2 cut(s)	614, 622
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	2 cut(s)	155, 477
BstV2I	GAAGAC	2 cut(s)	133, 516
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
Bsu15I	ATCGAT	2 cut(s)	369, 691
BsuRI	GGCC	3 cut(s)	730, 778, 920
BsuTUI	ATCGAT	2 cut(s)	369, 691
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	3 cut(s)	36, 304, 979
BveI	ACCTGC	1 cut(s)	862
Cac8I	GCNNGC	2 cut(s)	86, 932
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	930
ClaI	ATCGAT	2 cut(s)	369, 691
Csp6I	GTAC	4 cut(s)	136, 151, 430, 814
CviAII	CATG	5 cut(s)	354, 374, 454, 649, 955
CviJI	RGCY	9 cut(s)	84, 227, 730, 778, 826, 839, 910, 920, 930
CviKI_1	RGCY	9 cut(s)	84, 227, 730, 778, 826, 839, 910, 920, 930
CviQI	GTAC	4 cut(s)	136, 151, 430, 814
DdeI	CTNAG	2 cut(s)	139, 926
DpnI	GATC	4 cut(s)	246, 279, 372, 715
DpnII	GATC	4 cut(s)	244, 277, 370, 713
Eco147I	AGGCCT	1 cut(s)	920
Eco31I	GGTCTC	2 cut(s)	443, 551
EcoRII	CCWGG	1 cut(s)	622
EcoT22I	ATGCAT	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	600
FaeI	CATG	5 cut(s)	357, 377, 457, 652, 958
FatI	CATG	5 cut(s)	353, 373, 453, 648, 954
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	2 cut(s)	144, 466
FokI	GGATG	2 cut(s)	23, 311
Fsp4HI	GCNGC	2 cut(s)	144, 466
FspBI	CTAG	2 cut(s)	500, 982
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	2 cut(s)	144, 466
GsaI	CCCAGC	1 cut(s)	897
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	730, 778, 920
HapII	CCGG	2 cut(s)	616, 931
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	5 cut(s)	357, 377, 457, 652, 958
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	2 cut(s)	274, 756
HindII	GTYRAC	2 cut(s)	274, 756
HpaI	GTTAAC	1 cut(s)	274
HpaII	CCGG	2 cut(s)	616, 931
HphI	GGTGA	1 cut(s)	675
Hpy166II	GTNNAC	5 cut(s)	274, 639, 645, 756, 905
Hpy188I	TCNGA	5 cut(s)	81, 97, 531, 823, 831
Hpy188III	TCNNGA	4 cut(s)	232, 359, 374, 711
Hpy8I	GTNNAC	5 cut(s)	274, 639, 645, 756, 905
Hpy99I	CGWCG	2 cut(s)	400, 813
HpyAV	CCTTC	2 cut(s)	609, 828
HpyCH4III	ACNGT	7 cut(s)	162, 241, 393, 574, 679, 708, 813
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	5 cut(s)	76, 333, 457, 495, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 542, 931
HpyF3I	CTNAG	2 cut(s)	139, 926
HpySE526I	ACGT	1 cut(s)	641
Hsp92II	CATG	5 cut(s)	357, 377, 457, 652, 958
HspAI	GCGC	1 cut(s)	543
KpnI	GGTACC	1 cut(s)	817
KroI	GCCGGC	1 cut(s)	930
KroNI	GCCGGC	1 cut(s)	932
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	244, 277, 370, 713
LmnI	GCTCC	1 cut(s)	823
Lsp1109I	GCAGC	2 cut(s)	155, 477
LweI	GCATC	4 cut(s)	6, 59, 85, 529
MaeI	CTAG	2 cut(s)	500, 982
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	4 cut(s)	246, 279, 372, 715
MboI	GATC	4 cut(s)	244, 277, 370, 713
MboII	GAAGA	4 cut(s)	127, 138, 521, 955
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	1 cut(s)	713
MluCI	AATT	6 cut(s)	55, 118, 131, 524, 549, 662
Mph1103I	ATGCAT	1 cut(s)	78
MroNI	GCCGGC	1 cut(s)	930
MroXI	GAANNNNTTC	1 cut(s)	679
MseI	TTAA	2 cut(s)	222, 273
MspI	CCGG	2 cut(s)	616, 931
MspR9I	CCNGG	2 cut(s)	616, 624
MunI	CAATTG	1 cut(s)	131
Mva1269I	GAATGC	2 cut(s)	497, 538
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	3 cut(s)	224, 542, 931
NaeI	GCCGGC	1 cut(s)	932
NciI	CCSGG	1 cut(s)	616
NdeII	GATC	4 cut(s)	244, 277, 370, 713
NgoMIV	GCCGGC	1 cut(s)	930
NlaIII	CATG	5 cut(s)	357, 377, 457, 652, 958
NlaIV	GGNNCC	2 cut(s)	815, 825
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	2 cut(s)	357, 958
PagI	TCATGA	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	920
PciI	ACATGT	2 cut(s)	353, 954
PctI	GAATGC	2 cut(s)	497, 538
PdiI	GCCGGC	1 cut(s)	932
PdmI	GAANNNNTTC	1 cut(s)	679
PkrI	GCNGC	2 cut(s)	145, 467
PscI	ACATGT	2 cut(s)	353, 954
Psp6I	CCWGG	1 cut(s)	622
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	2 cut(s)	815, 825
PsrI	GAACNNNNNNTAC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	713
RsaI	GTAC	4 cut(s)	137, 152, 431, 815
RsaNI	GTAC	4 cut(s)	136, 151, 430, 814
SaqAI	TTAA	2 cut(s)	222, 273
SatI	GCNGC	2 cut(s)	144, 466
Sau3AI	GATC	4 cut(s)	244, 277, 370, 713
ScaI	AGTACT	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	616, 624
SfaNI	GCATC	4 cut(s)	6, 59, 85, 529
SmlI	CTYRAG	3 cut(s)	104, 769, 914
SmoI	CTYRAG	3 cut(s)	104, 769, 914
Sse9I	AATT	6 cut(s)	55, 118, 131, 524, 549, 662
SseBI	AGGCCT	1 cut(s)	920
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	2 cut(s)	500, 982
StuI	AGGCCT	1 cut(s)	920
StyD4I	CCNGG	2 cut(s)	614, 622
TaaI	ACNGT	7 cut(s)	162, 241, 393, 574, 679, 708, 813
TaiI	ACGT	1 cut(s)	644
TaqI	TCGA	4 cut(s)	369, 398, 691, 941
TaqII	GACCGA	1 cut(s)	741
TasI	AATT	6 cut(s)	55, 118, 131, 524, 549, 662
TatI	WGTACW	2 cut(s)	135, 150
Tru1I	TTAA	2 cut(s)	222, 273
Tru9I	TTAA	2 cut(s)	222, 273
TseI	GCWGC	2 cut(s)	143, 465
TspDTI	ATGAA	3 cut(s)	303, 315, 522
TspGWI	ACGGA	2 cut(s)	474, 582
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	2 cut(s)	357, 958
XmiI	GTMKAC	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	679
XspI	CTAG	2 cut(s)	500, 982
ZrmI	AGTACT	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.