Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002015

Physical Location & Seq

Genomic Coordinates Forward (+)

19033542 .. 19037012

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51270.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGAAGCTTGACGTGAATGTGTTGAGATATTTATCCAAAGATGATTTTCGAGTTCTCACTGCTGTCGAGATGGGAATGCGAAACCATGAGATTGTTCCTTCTGAGCTTGTGGAGCGCATTGCTTGTCTAAAACATGGAGGCACCTACAAGGTCCTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCACGATTCCTCTAAATATGATGGATTCCGACTCACCTATCTGGGTTATGACTTTCTTGCCATTAAAACATTGGTCAACCGGGGTATATTTACCGGTGTCGGTCGTCAGATTGGTGTTGGTAAAGAGTCAGACATATTTGAGGTCGCTCAGGAAGATGGAACTATTCTAGCAATGAAGTTACATAGACTAGGGAGAACCTCCTTTAGGGCTGTCAAATCTAAGCGTGACTACTTGAGGCATCGCAGTAGTTTCAGCTGGTTGTATCTCTCCCGACTTGCAGCTCTCAAGGAGTTTGCTTTTATGAAGGCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGACATTGTGTTATCATGTCCCTTGTGCAAGGTTACCCCATGGTTCAGGTGAAGCAATTACAGAACCCTGAGACAATTTTCGAGAAGATCATTGGTATTGTTGTTCGTTTGGCTGAGCATGGTCTAATTCATTGTGACTTCAATGAATTCAACATCATGATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAATGGTATCTGTTTCACACCGAAATGCACAAATGTACTTTGACCGTGATATCGAATGCATCTTCAAGTTTTTCAGAAAAAGGTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGGAGACGGAGGTGGATGAGAACAGCAGACCATCTTTTTTCGATATTACTAAAGATGCTAATGCTCTGGATAAAGATCTAGAAGCTAGTGGGTTCACAAGAAAGGAGCAGACTGACCTCGATAAATTTATTGAAGGTGGGGTGGAGAAGAGTGAAGATTCTGATGAGGATGAGGAATCTGATGATGAAGAGCAGACTTGTGAATCAAACGAAGAAGGAAACCTAAATGAAATAAAATCATTACAGTTGCAAGACAAGGAGCAAAAAAGTTCAGATGGTGTTGAGGCAGAAGTTGAGTTGGATAATACCGAGAACGGTGAAAGCAATGGAGATGAAGATGAAGTCGGAAGTAATGAGGAGGAGGAAGAGAAAGAGGCAGAGCTGGAGAAAAATTTGGGCAAGGTAAGACGCAGAGCCATGGCAGCAGCCAGGGGACGTAGAAAGTCACAGTCTTCAAGAAACACATACAAGGACAAAGGACGCGGATCCCAAAACTCCAAGATCCACAGCAACATGAGCGGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

461

Amino Acids

53.02

Weight (kDa)

5.18

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rio2_N	PF09202	8 - 89	9.8e-34	Rio2, N-terminal
RIO1	PF01163	106 - 282	4.4e-57	RIO domain
ABC1	PF03109	169 - 260	1.6e-08	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51270 AT3G51270 AT3G51270 AT3G51270
fragaria_vesca	FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_7g06440 FvH4_7g06440
malus_domestica	MD01G1035500.v1.1 MD02G1001000.v1.1 MD15G1320300.v1.1
prunus_persica	Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1
pyrus_communis	pycom01g06260 pycom15g28140
rosa_chinensis	RchiOBHm_Chr1g0334711 RchiOBHm_Chr7g0210541
rosa_laevigata	RLG00000026279 RLG00000029431
rosa_multiflora	Rmu_sc0002295.1_g000002 Rmu_sc0006031.1_g000024
rosa_roxburghii	Rroxscaffold_3G00236050 Rroxscaffold_4G00279110 Rroxscaffold_4G00316660
rosa_rugosa	Rorug01G0115100 Rorug01G0115200 Rorug07G0122000 Rorug07G0122100 Rorug07G0122100 Rorug07G0122200 Rorug07G0122200
rosa_samantha	Rh1AG140300 Rh1BG107400 Rh1CG132200 Rh1DG144300 Rh7AG254300 Rh7BG249600 Rh7CG271200 Rh7DG262000
rosa_wichuraiana	Rw1G011570 Rw7G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	1377
AccII	CGCG	1 cut(s)	1341
AciI	CCGC	2 cut(s)	1341, 1377
AclWI	GGATC	3 cut(s)	1338, 1351, 1354
AcsI	RAATTY	3 cut(s)	686, 983, 1249
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	5 cut(s)	682, 691, 805, 992, 1314
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	1286
AluBI	AGCT	8 cut(s)	7, 106, 178, 441, 467, 527, 944, 1240
AluI	AGCT	8 cut(s)	7, 106, 178, 441, 467, 527, 944, 1240
Alw26I	GTCTC	2 cut(s)	605, 857
AlwI	GGATC	3 cut(s)	1338, 1351, 1354
ApeKI	GCWGC	3 cut(s)	464, 1280, 1283
ApoI	RAATTY	3 cut(s)	686, 983, 1249
AsiGI	ACCGGT	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	4 cut(s)	211, 601, 863, 1187
AvaII	GGWCC	1 cut(s)	151
BamHI	GGATCC	1 cut(s)	1343
BanI	GGYRCC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	1302
BbvI	GCAGC	3 cut(s)	476, 1292, 1295
BccI	CCATC	5 cut(s)	64, 200, 335, 898, 1127
BciT130I	CCWGG	1 cut(s)	1288
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	605, 857
BfaI	CTAG	4 cut(s)	353, 374, 938, 945
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	4 cut(s)	465, 1281, 1284, 1378
BlpI	GCTNAGC	1 cut(s)	654
BlsI	GCNGC	4 cut(s)	466, 1282, 1285, 1379
Bme1390I	CCNGG	2 cut(s)	266, 1288
Bme18I	GGWCC	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	3 cut(s)	142, 519, 1345
BmrFI	CCNGG	2 cut(s)	266, 1288
BmsI	GCATC	3 cut(s)	433, 807, 904
BpiI	GAAGAC	1 cut(s)	1302
BpmI	CTGGAG	1 cut(s)	1262
Bpu10I	CCTNAGC	1 cut(s)	333
Bpu1102I	GCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	3 cut(s)	152, 439, 455
BpuMI	CCSGG	1 cut(s)	266
BsaBI	GATNNNNATC	2 cut(s)	31, 933
BsaJI	CCNNGG	4 cut(s)	265, 579, 1275, 1287
BsaWI	WCCGGW	2 cut(s)	278, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse118I	RCCGGY	1 cut(s)	278
Bse3DI	GCAATG	3 cut(s)	117, 363, 1189
Bse8I	GATNNNNATC	2 cut(s)	31, 933
BseBI	CCWGG	1 cut(s)	1288
BseDI	CCNNGG	4 cut(s)	265, 579, 1275, 1287
BseGI	GGATG	2 cut(s)	880, 1033
BseJI	GATNNNNATC	2 cut(s)	31, 933
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMI	GCAATG	3 cut(s)	117, 363, 1189
BseMII	CTCAG	4 cut(s)	93, 347, 600, 645
BseRI	GAGGAG	3 cut(s)	875, 1229, 1232
BseXI	GCAGC	3 cut(s)	476, 1292, 1295
Bsh1236I	CGCG	1 cut(s)	1341
Bsh1285I	CGRYCG	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	140
BshTI	ACCGGT	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	289
BsiSI	CCGG	3 cut(s)	265, 279, 515
BslFI	GGGAC	2 cut(s)	544, 1305
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	2 cut(s)	605, 857
BsmBI	CGTCTC	1 cut(s)	857
BsmFI	GGGAC	2 cut(s)	544, 1305
BsmI	GAATGC	2 cut(s)	81, 800
Bsp143I	GATC	4 cut(s)	627, 934, 1343, 1359
Bsp1720I	GCTNAGC	1 cut(s)	654
Bsp19I	CCATGG	2 cut(s)	579, 1275
BspACI	CCGC	2 cut(s)	1341, 1377
BspCNI	CTCAG	4 cut(s)	94, 346, 601, 646
BspFNI	CGCG	1 cut(s)	1341
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	3 cut(s)	142, 519, 1345
BspPI	GGATC	3 cut(s)	1338, 1351, 1354
BspQI	GCTCTTC	1 cut(s)	1041
BspT107I	GGYRCC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	1377
BsrDI	GCAATG	3 cut(s)	117, 363, 1189
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	4 cut(s)	265, 579, 1275, 1287
BssMI	GATC	4 cut(s)	627, 934, 1343, 1359
BssT1I	CCWWGG	2 cut(s)	579, 1275
Bst2UI	CCWGG	1 cut(s)	1288
Bst4CI	ACNGT	4 cut(s)	785, 1104, 1175, 1308
Bst6I	CTCTTC	4 cut(s)	705, 1001, 1041, 1218
BstDEI	CTNAG	5 cut(s)	102, 333, 405, 609, 654
BstDSI	CCRYGG	2 cut(s)	579, 1275
BstEII	GGTNACC	1 cut(s)	572
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	880, 1033
BstFNI	CGCG	1 cut(s)	1341
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	4 cut(s)	630, 937, 1346, 1362
BstMAI	GTCTC	2 cut(s)	605, 857
BstMBI	GATC	4 cut(s)	627, 934, 1343, 1359
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 1280, 1374
BstNI	CCWGG	1 cut(s)	1288
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	264, 1286
BstUI	CGCG	1 cut(s)	1341
BstV1I	GCAGC	3 cut(s)	476, 1292, 1295
BstV2I	GAAGAC	1 cut(s)	1302
BstX2I	RGATCY	3 cut(s)	934, 1343, 1359
BstYI	RGATCY	3 cut(s)	934, 1343, 1359
BtgI	CCRYGG	2 cut(s)	579, 1275
BtgZI	GCGATG	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	880, 1033
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
CciI	TCATGA	1 cut(s)	696
CfoI	GCGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	2 cut(s)	1275, 1347
Csp6I	GTAC	1 cut(s)	775
CspAI	ACCGGT	1 cut(s)	278
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	5 cut(s)	102, 333, 405, 609, 654
DpnI	GATC	4 cut(s)	629, 936, 1345, 1361
DpnII	GATC	4 cut(s)	627, 934, 1343, 1359
Eam1104I	CTCTTC	4 cut(s)	705, 1001, 1041, 1218
EarI	CTCTTC	4 cut(s)	705, 1001, 1041, 1218
Eco130I	CCWWGG	2 cut(s)	579, 1275
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	572
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	1286
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	579, 1275
EcoT22I	ATGCAT	1 cut(s)	800
ErhI	CCWWGG	2 cut(s)	579, 1275
Esp3I	CGTCTC	1 cut(s)	857
FaqI	GGGAC	2 cut(s)	544, 1305
Fnu4HI	GCNGC	4 cut(s)	465, 1281, 1284, 1378
FokI	GGATG	2 cut(s)	887, 1040
Fsp4HI	GCNGC	4 cut(s)	465, 1281, 1284, 1378
FspBI	CTAG	4 cut(s)	353, 374, 938, 945
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	4 cut(s)	465, 1281, 1284, 1378
GsuI	CTGGAG	1 cut(s)	1262
HapII	CCGG	3 cut(s)	265, 279, 515
HgaI	GACGC	2 cut(s)	1275, 1347
HhaI	GCGC	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	2 cut(s)	5, 176
HinfI	GANTC	8 cut(s)	191, 210, 216, 311, 854, 1016, 1034, 1061
HpaII	CCGG	3 cut(s)	265, 279, 515
HphI	GGTGA	4 cut(s)	211, 601, 863, 1187
Hpy166II	GTNNAC	2 cut(s)	262, 954
Hpy188III	TCNNGA	9 cut(s)	67, 154, 335, 456, 622, 697, 926, 938, 1314
Hpy8I	GTNNAC	2 cut(s)	262, 954
HpyAV	CCTTC	4 cut(s)	108, 484, 986, 1067
HpyCH4III	ACNGT	4 cut(s)	785, 1104, 1175, 1308
HpyCH4IV	ACGT	2 cut(s)	12, 1294
HpyCH4V	TGCA	7 cut(s)	184, 464, 537, 568, 767, 798, 1108
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 1280, 1374
HpyF3I	CTNAG	5 cut(s)	102, 333, 405, 609, 654
HpySE526I	ACGT	2 cut(s)	12, 1294
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	627, 934, 1343, 1359
LguI	GCTCTTC	1 cut(s)	1041
LmnI	GCTCC	3 cut(s)	112, 964, 1117
Lsp1109I	GCAGC	3 cut(s)	476, 1292, 1295
LweI	GCATC	3 cut(s)	433, 807, 904
MaeI	CTAG	4 cut(s)	353, 374, 938, 945
MaeII	ACGT	2 cut(s)	12, 1294
MaeIII	GTNAC	5 cut(s)	363, 410, 572, 674, 1302
MalI	GATC	4 cut(s)	629, 936, 1345, 1361
MbiI	CCGCTC	1 cut(s)	1377
MboI	GATC	4 cut(s)	627, 934, 1343, 1359
MflI	RGATCY	3 cut(s)	934, 1343, 1359
MluCI	AATT	6 cut(s)	596, 615, 666, 686, 983, 1249
MlyI	GAGTC	2 cut(s)	210, 320
MmeI	TCCRAC	3 cut(s)	238, 1137, 1183
Mph1103I	ATGCAT	1 cut(s)	800
MseI	TTAA	2 cut(s)	249, 825
MslI	CAYNNNNRTG	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	3 cut(s)	265, 279, 515
MspR9I	CCNGG	2 cut(s)	266, 1288
Mva1269I	GAATGC	2 cut(s)	81, 800
MvaI	CCWGG	1 cut(s)	1288
MvnI	CGCG	1 cut(s)	1341
MwoI	GCNNNNNNNGC	3 cut(s)	112, 1280, 1374
NciI	CCSGG	1 cut(s)	266
NcoI	CCATGG	2 cut(s)	579, 1275
NdeII	GATC	4 cut(s)	627, 934, 1343, 1359
NlaIV	GGNNCC	3 cut(s)	142, 519, 1345
NmuCI	GTSAC	3 cut(s)	410, 674, 1302
NsiI	ATGCAT	1 cut(s)	800
PagI	TCATGA	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	1041
PctI	GAATGC	2 cut(s)	81, 800
PfeI	GAWTC	6 cut(s)	191, 210, 854, 1016, 1034, 1061
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	4 cut(s)	466, 1282, 1285, 1379
PleI	GAGTC	2 cut(s)	210, 319
PpsI	GAGTC	2 cut(s)	210, 319
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	1286
PspEI	GGTNACC	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	1286
PspN4I	GGNNCC	3 cut(s)	142, 519, 1345
PspPI	GGNCC	1 cut(s)	151
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	3 cut(s)	934, 1343, 1359
PvuII	CAGCTG	1 cut(s)	441
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
RseI	CAYNNNNRTG	1 cut(s)	762
SapI	GCTCTTC	1 cut(s)	1041
SaqAI	TTAA	2 cut(s)	249, 825
SatI	GCNGC	4 cut(s)	465, 1281, 1284, 1378
Sau3AI	GATC	4 cut(s)	627, 934, 1343, 1359
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	2 cut(s)	210, 320
ScrFI	CCNGG	2 cut(s)	266, 1288
SfaNI	GCATC	3 cut(s)	433, 807, 904
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	3 cut(s)	167, 418, 470
SmoI	CTYRAG	3 cut(s)	167, 418, 470
Sse9I	AATT	6 cut(s)	596, 615, 666, 686, 983, 1249
SsiI	CCGC	2 cut(s)	1341, 1377
SspMI	CTAG	4 cut(s)	353, 374, 938, 945
StyD4I	CCNGG	2 cut(s)	264, 1286
StyI	CCWWGG	2 cut(s)	579, 1275
TaaI	ACNGT	4 cut(s)	785, 1104, 1175, 1308
TaiI	ACGT	2 cut(s)	15, 1297
TaqI	TCGA	6 cut(s)	49, 66, 621, 792, 900, 978
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	6 cut(s)	596, 615, 666, 686, 983, 1249
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	1 cut(s)	1380
TfiI	GAWTC	6 cut(s)	191, 210, 854, 1016, 1034, 1061
Tru1I	TTAA	2 cut(s)	249, 825
Tru9I	TTAA	2 cut(s)	249, 825
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	3 cut(s)	410, 674, 1302
TseI	GCWGC	3 cut(s)	464, 1280, 1283
Tsp45I	GTSAC	3 cut(s)	410, 674, 1302
TspGWI	ACGGA	1 cut(s)	881
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	151
XagI	CCTNNNNNAGG	1 cut(s)	388
XapI	RAATTY	3 cut(s)	686, 983, 1249
XbaI	TCTAGA	1 cut(s)	937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XspI	CTAG	4 cut(s)	353, 374, 938, 945
Zsp2I	ATGCAT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.