Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002015

Physical Location & Seq

Genomic Coordinates Reverse (-)

18624834 .. 18629457

Gene Structure 4624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG107400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAAGCTGGATGTGGATGTATTGAGATACCTCACTAAAGAGGATTTCAGGGTTTTAACCGCTGTCGAAATGGGAATGCGAAATCATGAAATCGTGCCCGCTGAACTGGTGGAGCGTATAGCTGCTCTCAAGCATGGTGGCACTTACAAAGTTATGAAAAATCTGCTCAAGCATAAGCTCTTGCACCACGACGCCTCTAAATATGATGGGTTTCGGCTAACGTACCTCGGTTATGATTTTCTTGCAATTAAGACTTTGGTCAACCGTGGAGTCTTTTCAGCCGTTGGTCGCCAACTTGGTGTTGGAAAAGAGTCTGATATTTTTGAGGTGGGCACCGAAGATGGTACAGTGATGGCAATGAAATTGCACAGGCTGGGTAGAACTTCTTTCAGGGCTGTCAAGTCCAAGCGTGATTACTTAAAACATCGTAGCAGTTTCAATTGGCTATACTTGTCCCGTCTTGCTGCACTCAGAGAATTTTCTTTTATGAAGGCTTTAGAAGAGCATGGTTTTCCTGTTCCAAATGCAGTAGATTGTAACAGGCATTGTGTGATTATGTCACTAGTACCAGGCTATCCCCTTGTGCAGGTGAAGCAATTGGAAAATCCTGAGACAGTTTTCAATTCTATCATTGGGCTCGTTGTTCGTCTGGCAGAACATGGTTTGATTCACTGTGACTTCAATGAATTTAACATTATGATTGATGATGACGAGAAGGTCACCATGATTGATTTTCCCCAAATGGTCTCTGTATCCCATCGTAATGCACAAATGTACTTTGATCGTGATGTGGAATGTGTCTTTAAGTTTTTCAGCAAGAGATTCAACATGTCTTTCCATGAATGCACAGCTGATATTGATGGAACAGCGGTGGACACAGATGATAGTGGCAGGCCTTCGTTTACTTCAATAGCGAAAGATACTGGTTTTCTAGACAAGGAACTTTCTGCTAGTGGGTTTACTAGGAAGGATCAGGAAGAAATTGCTAAGTTTATTGAAGGAGGGATCAAGAAGGATGCTAGTTCTGATGATGAAGATACTGAAGATGACGAGCACATCTCTGTGTTAAATGAAGCAAACACAATGGGTGTTGATTCACTGCATGTGGCAGATCAGACGTTACAGCATGATGAGCAAGTTGAACCAGAGGGCAATGTAAGAACATGTGAAGCAGGTCCCAGCAGTGAACCCGAAAATGAAGATGGGAGTAATGAGGTAGATCTTGAATTTATTTTTCTTCCTACAAAGACTTGGAACTTAGCATTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

423

Amino Acids

47.95

Weight (kDa)

5.12

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rio2_N	PF09202	8 - 89	5.5e-34	Rio2, N-terminal
RIO1	PF01163	106 - 280	1.6e-54	RIO domain
ABC1	PF03109	170 - 260	2.3e-07	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51270 AT3G51270 AT3G51270 AT3G51270
fragaria_vesca	FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_7g06440 FvH4_7g06440
malus_domestica	MD01G1035500.v1.1 MD02G1001000.v1.1 MD15G1320300.v1.1
prunus_persica	Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1
pyrus_communis	pycom01g06260 pycom15g28140
rosa_chinensis	RchiOBHm_Chr1g0334711 RchiOBHm_Chr7g0210541
rosa_laevigata	RLG00000026279 RLG00000029431
rosa_multiflora	Rmu_sc0002295.1_g000002 Rmu_sc0006031.1_g000024
rosa_roxburghii	Rroxscaffold_3G00236050 Rroxscaffold_4G00279110 Rroxscaffold_4G00316660
rosa_rugosa	Rorug01G0115100 Rorug01G0115200 Rorug07G0122000 Rorug07G0122100 Rorug07G0122100 Rorug07G0122200 Rorug07G0122200
rosa_samantha	Rh1AG140300 Rh1BG107400 Rh1CG132200 Rh1DG144300 Rh7AG254300 Rh7BG249600 Rh7CG271200 Rh7DG262000
rosa_wichuraiana	Rw1G011570 Rw7G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	577
AasI	GACNNNNNNGTC	1 cut(s)	716
Acc36I	ACCTGC	2 cut(s)	577, 1163
AccB1I	GGYRCC	1 cut(s)	332
AciI	CCGC	3 cut(s)	60, 99, 869
AclWI	GGATC	2 cut(s)	978, 1013
AcsI	RAATTY	3 cut(s)	476, 686, 1226
AcuI	CTGAAG	1 cut(s)	1062
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	4 cut(s)	224, 346, 567, 776
AfiI	CCNNNNNNNGG	1 cut(s)	586
AflIII	ACRYGT	2 cut(s)	828, 1163
AgsI	TTSAA	8 cut(s)	439, 622, 682, 826, 909, 998, 1142, 1226
AhlI	ACTAGT	1 cut(s)	562
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	4 cut(s)	7, 122, 178, 851
AluI	AGCT	4 cut(s)	7, 122, 178, 851
Alw21I	GWGCWC	1 cut(s)	1056
Alw26I	GTCTC	2 cut(s)	605, 751
AlwI	GGATC	2 cut(s)	978, 1013
AoxI	GGCC	1 cut(s)	893
ApeKI	GCWGC	2 cut(s)	122, 464
ApoI	RAATTY	3 cut(s)	476, 686, 1226
AspS9I	GGNCC	1 cut(s)	1175
AsuHPI	GGTGA	2 cut(s)	601, 712
AvaII	GGWCC	1 cut(s)	1175
BaeGI	GKGCMC	2 cut(s)	99, 335
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	1056
BbvI	GCAGC	2 cut(s)	109, 451
BccI	CCATC	6 cut(s)	200, 335, 346, 765, 854, 1196
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	570
BciVI	GTATCC	1 cut(s)	763
BcoDI	GTCTC	2 cut(s)	605, 751
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	5 cut(s)	563, 932, 951, 963, 1020
BfuAI	ACCTGC	2 cut(s)	577, 1163
BfuI	GTATCC	1 cut(s)	763
BglII	AGATCT	1 cut(s)	1219
BisI	GCNGC	2 cut(s)	123, 465
BlsI	GCNGC	2 cut(s)	124, 466
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	1175
BmgT120I	GGNCC	1 cut(s)	1175
BmiI	GGNNCC	2 cut(s)	334, 1177
BmrFI	CCNGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	1006
BoxI	GACNNNNGTC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	1043, 1075
BpuEI	CTTGAG	2 cut(s)	113, 152
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	751
BsaJI	CCNNGG	2 cut(s)	226, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	2 cut(s)	111, 928
Bse3DI	GCAATG	2 cut(s)	363, 1159
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	226, 265
BseGI	GGATG	3 cut(s)	16, 22, 1021
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	2 cut(s)	363, 1159
BseMII	CTCAG	2 cut(s)	484, 600
BseNI	ACTGG	2 cut(s)	111, 928
BseSI	GKGCMC	2 cut(s)	99, 335
BseXI	GCAGC	2 cut(s)	109, 451
BseYI	CCCAGC	2 cut(s)	373, 1178
BsgI	GTGCAG	2 cut(s)	450, 605
BshFI	GGCC	1 cut(s)	895
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	1056
BslFI	GGGAC	2 cut(s)	439, 1161
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	2 cut(s)	605, 751
BsmFI	GGGAC	2 cut(s)	439, 1161
BsmI	GAATGC	2 cut(s)	81, 848
BsnI	GGCC	1 cut(s)	895
Bso31I	GGTCTC	1 cut(s)	751
Bsp1286I	GDGCHC	4 cut(s)	99, 335, 639, 1056
Bsp143I	GATC	5 cut(s)	781, 970, 1005, 1111, 1219
BspACI	CCGC	3 cut(s)	60, 99, 869
BspANI	GGCC	1 cut(s)	895
BspCNI	CTCAG	2 cut(s)	483, 601
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	334, 1177
BspMI	ACCTGC	2 cut(s)	577, 1163
BspPI	GGATC	2 cut(s)	978, 1013
BspQI	GCTCTTC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	751
BsrDI	GCAATG	2 cut(s)	363, 1159
BsrI	ACTGG	2 cut(s)	111, 928
BssECI	CCNNGG	2 cut(s)	226, 265
BssMI	GATC	5 cut(s)	781, 970, 1005, 1111, 1219
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	4 cut(s)	266, 349, 616, 674
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	99, 893
BstDEI	CTNAG	4 cut(s)	470, 609, 987, 1258
BstDSI	CCRYGG	1 cut(s)	265
BstEII	GGTNACC	1 cut(s)	718
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	16, 22, 1021
BstKTI	GATC	5 cut(s)	784, 973, 1008, 1114, 1222
BstMAI	GTCTC	2 cut(s)	605, 751
BstMBI	GATC	5 cut(s)	781, 970, 1005, 1111, 1219
BstMWI	GCNNNNNNNGC	2 cut(s)	592, 1132
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	3 cut(s)	832, 1106, 1167
BstPAI	GACNNNNGTC	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	568
BstSLI	GKGCMC	2 cut(s)	99, 335
BstV1I	GCAGC	2 cut(s)	109, 451
BstX2I	RGATCY	1 cut(s)	1219
BstYI	RGATCY	1 cut(s)	1219
BsuI	GTATCC	1 cut(s)	763
BsuRI	GGCC	1 cut(s)	895
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	16, 22, 1021
BtsI	GCAGTG	2 cut(s)	1097, 1189
BtsIMutI	CAGTG	4 cut(s)	354, 670, 1097, 1189
BveI	ACCTGC	2 cut(s)	577, 1163
Cac8I	GCNNGC	2 cut(s)	99, 893
CciI	TCATGA	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	1175
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	4 cut(s)	223, 345, 566, 775
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviQI	GTAC	4 cut(s)	223, 345, 566, 775
DdeI	CTNAG	4 cut(s)	470, 609, 987, 1258
DpnI	GATC	5 cut(s)	783, 972, 1007, 1113, 1221
DpnII	GATC	5 cut(s)	781, 970, 1005, 1111, 1219
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	895
Eco24I	GRGCYC	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	1175
Eco57I	CTGAAG	1 cut(s)	1062
Eco91I	GGTNACC	1 cut(s)	718
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	1175
EcoO65I	GGTNACC	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	639
FaqI	GGGAC	2 cut(s)	439, 1161
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	123, 465
FokI	GGATG	3 cut(s)	23, 29, 1028
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	2 cut(s)	123, 465
FspBI	CTAG	5 cut(s)	563, 932, 951, 963, 1020
GluI	GCNGC	2 cut(s)	123, 465
GsaI	CCCAGC	2 cut(s)	377, 1182
HaeIII	GGCC	1 cut(s)	895
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	5 cut(s)	270, 311, 667, 822, 1094
HphI	GGTGA	2 cut(s)	601, 712
Hpy166II	GTNNAC	5 cut(s)	262, 874, 903, 960, 1187
Hpy188I	TCNGA	4 cut(s)	316, 473, 1027, 1116
Hpy188III	TCNNGA	7 cut(s)	86, 608, 785, 932, 974, 1009, 1223
Hpy8I	GTNNAC	5 cut(s)	262, 874, 903, 960, 1187
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	6 cut(s)	484, 709, 906, 961, 992, 1006
HpyCH4III	ACNGT	4 cut(s)	266, 349, 616, 674
HpyCH4IV	ACGT	2 cut(s)	221, 1118
HpyCH4V	TGCA	9 cut(s)	184, 245, 367, 467, 527, 586, 767, 846, 1102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	592, 1132
HpyF3I	CTNAG	4 cut(s)	470, 609, 987, 1258
HpySE526I	ACGT	2 cut(s)	221, 1118
Hsp92I	GRCGYC	1 cut(s)	192
Kzo9I	GATC	5 cut(s)	781, 970, 1005, 1111, 1219
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	109, 451
LweI	GCATC	1 cut(s)	1006
MaeI	CTAG	5 cut(s)	563, 932, 951, 963, 1020
MaeII	ACGT	2 cut(s)	221, 1118
MaeIII	GTNAC	5 cut(s)	536, 558, 674, 718, 1119
MalI	GATC	5 cut(s)	783, 972, 1007, 1113, 1221
MboI	GATC	5 cut(s)	781, 970, 1005, 1111, 1219
MboII	GAAGA	7 cut(s)	350, 512, 989, 1046, 1055, 1211, 1229
MfeI	CAATTG	2 cut(s)	439, 596
MflI	RGATCY	1 cut(s)	1219
MhlI	GDGCHC	4 cut(s)	99, 335, 639, 1056
MluCI	AATT	9 cut(s)	246, 362, 439, 476, 596, 622, 686, 981, 1226
MlyI	GAGTC	2 cut(s)	279, 320
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	8 cut(s)	34, 41, 205, 236, 319, 995, 1141, 1207
MseI	TTAA	6 cut(s)	56, 249, 419, 690, 804, 1067
MslI	CAYNNNNRTG	2 cut(s)	762, 1061
MspA1I	CMGCKG	4 cut(s)	62, 101, 851, 869
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	2 cut(s)	439, 596
Mva1269I	GAATGC	2 cut(s)	81, 848
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	592, 1132
NdeII	GATC	5 cut(s)	781, 970, 1005, 1111, 1219
NlaIV	GGNNCC	2 cut(s)	334, 1177
NmuCI	GTSAC	3 cut(s)	558, 674, 718
NspI	RCATGY	3 cut(s)	832, 1106, 1167
PagI	TCATGA	1 cut(s)	85
PaqCI	CACCTGC	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	895
PciI	ACATGT	2 cut(s)	828, 1163
PciSI	GCTCTTC	1 cut(s)	495
PctI	GAATGC	2 cut(s)	81, 848
PfeI	GAWTC	3 cut(s)	667, 822, 1094
PkrI	GCNGC	2 cut(s)	124, 466
PleI	GAGTC	2 cut(s)	278, 319
PpsI	GAGTC	2 cut(s)	278, 319
PpuMI	RGGWCCY	1 cut(s)	1175
PscI	ACATGT	2 cut(s)	828, 1163
PshAI	GACNNNNGTC	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	1175
Psp6I	CCWGG	1 cut(s)	568
PspEI	GGTNACC	1 cut(s)	718
PspFI	CCCAGC	2 cut(s)	373, 1178
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	2 cut(s)	334, 1177
PspPI	GGNCC	1 cut(s)	1175
PspPPI	RGGWCCY	1 cut(s)	1175
PsuI	RGATCY	1 cut(s)	1219
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	4 cut(s)	224, 346, 567, 776
RsaNI	GTAC	4 cut(s)	223, 345, 566, 775
RseI	CAYNNNNRTG	2 cut(s)	762, 1061
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	6 cut(s)	56, 249, 419, 690, 804, 1067
SatI	GCNGC	2 cut(s)	123, 465
Sau3AI	GATC	5 cut(s)	781, 970, 1005, 1111, 1219
Sau96I	GGNCC	1 cut(s)	1175
SchI	GAGTC	2 cut(s)	279, 320
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	4 cut(s)	99, 335, 639, 1056
SfaNI	GCATC	1 cut(s)	1006
SinI	GGWCC	1 cut(s)	1175
SmiMI	CAYNNNNRTG	2 cut(s)	762, 1061
SmlI	CTYRAG	2 cut(s)	128, 167
SmoI	CTYRAG	2 cut(s)	128, 167
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	9 cut(s)	246, 362, 439, 476, 596, 622, 686, 981, 1226
SseBI	AGGCCT	1 cut(s)	895
SsiI	CCGC	3 cut(s)	60, 99, 869
SspMI	CTAG	5 cut(s)	563, 932, 951, 963, 1020
StuI	AGGCCT	1 cut(s)	895
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	4 cut(s)	266, 349, 616, 674
TaiI	ACGT	2 cut(s)	224, 1121
TaqI	TCGA	1 cut(s)	66
TasI	AATT	9 cut(s)	246, 362, 439, 476, 596, 622, 686, 981, 1226
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	3 cut(s)	667, 822, 1094
Tru1I	TTAA	6 cut(s)	56, 249, 419, 690, 804, 1067
Tru9I	TTAA	6 cut(s)	56, 249, 419, 690, 804, 1067
TscAI	CASTG	4 cut(s)	354, 677, 1104, 1189
TseFI	GTSAC	3 cut(s)	558, 674, 718
TseI	GCWGC	2 cut(s)	122, 464
Tsp45I	GTSAC	3 cut(s)	558, 674, 718
TspRI	CASTG	4 cut(s)	354, 677, 1104, 1189
VpaK11BI	GGWCC	1 cut(s)	1175
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	3 cut(s)	476, 686, 1226
XbaI	TCTAGA	1 cut(s)	931
XceI	RCATGY	3 cut(s)	832, 1106, 1167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XspI	CTAG	5 cut(s)	563, 932, 951, 963, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.