RLG00000029431

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
38714365 .. 38718428
4064 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029431

Sequence Viewer

Length: 1443 bp
ATGAAGCTGGATGTGGATGTGTTGAGATACCTCACTAAAGAGGATTTCAGGGTTTTAACCGCTGTCGAAATGGGAATGCGAAATCATGAAATCGTACCCGCTGAACTGGTGGAGCGTATAGCTGCGCTCAAGCATGGTGGCACTTACAAAGTTATGAAAAATCTGCTCAAGCATAAGCTCTTGCACCACGACGCCTCTAAATATGATGGGTTTCGGTTAACATACCTCGGTTATGATTTTCTTGCAATTAAGACTTTGGTCAACCGTGGAGTCTTTTCAGCCGTTGGTCGCCAACTTGGTGTTGGAAAAGAGTCTGATATTTTTGAGGTGGCCACCGAAGATGGTACAGTGATGGCAATGAAATTGCACAGGCTTGGTAGAACTTCTTTCAGGGCTGTCAAGTCTAAGCGTGATTACTTAAAACATCGTAGCAGTTTCAATTGGCTATACTTGTCCCGTCTTGCTGCACTCAGAGAATTTTCTTTTATGAAGGCTTTAGAAGAGCATGGTTTTCCTGTTCCAAATGCAGTAGATTGTAACAGGCATTGTGTGATTATGTCACTAGTACCAGGCTACCCCCTTGTGCAGGTGAAGCAATTGGAAAATCCTGAGACAGTTTTCAATGCTATCATTGGGCTCGTTGTTCGTCTGGCAGAACATGGTTTGATTCACTGTGACTTCAATGAATTTAACATTATGATTGATGATGACGAGAAGGTCACCATGATTGATTTTCCCCAAATGGTCTCTGTATCACATCGTAATGCACAAATGTACTTTGATCGTGATGTGGAATGTGTCTTTAAGTTTTTCAGCAAGAGATTCAACATGTCTTTCCATGAATGCACAGCTGATATTGATGGAACAGCGGTGGACACAGATGATAGTGGCAGGCCTTCGTTTACTTCAATAGCGAAAGATACTGGTTTTCTAGACAAGGAACTTTCTGCTAGTGGGTTTACTAGGAAGGATCAGGAAGAAATTGCTAAGTTTATTGAAGGAGGGATCAAGAAGGATGCTAGTTCTGATGATGAAGATACTGAAGATGATGAGCACATCTCTGTGTTAAATGAAGCAAACACAATGGGTGTTGATTCACTGCATGTGGCAGATCAGACGTTACAGCATGATGAGCAAGTTGAACCAGAGGGCAATGTAAGAACATGTGAAGCAGGTCCCAGCAGTGAACCTGAAAATGAAGATGGGAGTAATGAGGAGGGAGATAATGAGACGGTTAATAATGACAATGATGCTGAGCTGGAAAAACGCTTGAACAGGGTGAGGCGACGTGCTGTAACAGCAGCCCGTGGAGGACGAAAAACTTTTGCATCCAGAAATACCTACAAAGACAAGGGTGAGCACGGACCTTCTGCTTGCGCCATATATGGTCGGGCTCCATATTCATCTCTCAGGCAGTCAGGCGGTAATGATTTCAGAGATTGA

Protein Analysis

481

Amino Acids

54.1

Weight (kDa)

5.47

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rio2_N PF09202 8 - 89 6.7e-34 Rio2, N-terminal
RIO1 PF01163 106 - 280 7.6e-55 RIO domain
ABC1 PF03109 170 - 260 3.3e-07 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 577
AasI GACNNNNNNGTC 1 cut(s) 716
Acc36I ACCTGC 2 cut(s) 577, 1163
AciI CCGC 4 cut(s) 60, 99, 869, 1422
AclWI GGATC 2 cut(s) 978, 1013
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 2 cut(s) 476, 686
AcuI CTGAAG 1 cut(s) 1062
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 4 cut(s) 96, 346, 567, 776
AfiI CCNNNNNNNGG 1 cut(s) 586
AflIII ACRYGT 2 cut(s) 828, 1163
AgsI TTSAA 8 cut(s) 439, 622, 682, 826, 909, 998, 1142, 1273
AhlI ACTAGT 1 cut(s) 562
AjiI CACGTC 1 cut(s) 1289
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 5 cut(s) 7, 122, 178, 851, 1258
AluI AGCT 5 cut(s) 7, 122, 178, 851, 1258
Alw21I GWGCWC 2 cut(s) 1056, 1362
Alw26I GTCTC 3 cut(s) 605, 751, 1223
AlwI GGATC 2 cut(s) 978, 1013
AoxI GGCC 2 cut(s) 330, 893
ApeKI GCWGC 3 cut(s) 122, 464, 1301
ApoI RAATTY 2 cut(s) 476, 686
AspLEI GCGC 2 cut(s) 127, 1379
AspS9I GGNCC 2 cut(s) 1175, 1364
AsuHPI GGTGA 4 cut(s) 601, 712, 1291, 1367
AvaII GGWCC 2 cut(s) 1175, 1364
BalI TGGCCA 1 cut(s) 332
BanII GRGCYC 2 cut(s) 639, 1396
Bbv12I GWGCWC 2 cut(s) 1056, 1362
BbvI GCAGC 3 cut(s) 109, 451, 1313
BccI CCATC 5 cut(s) 200, 335, 346, 854, 1196
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 570
BcoDI GTCTC 3 cut(s) 605, 751, 1223
BcuI ACTAGT 1 cut(s) 562
BfaI CTAG 5 cut(s) 563, 932, 951, 963, 1020
BfuAI ACCTGC 2 cut(s) 577, 1163
BisI GCNGC 3 cut(s) 123, 465, 1302
BlpI GCTNAGC 1 cut(s) 1254
BlsI GCNGC 3 cut(s) 124, 466, 1303
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 2 cut(s) 1175, 1364
BmgBI CACGTC 1 cut(s) 1289
BmgT120I GGNCC 2 cut(s) 1175, 1364
BmiI GGNNCC 2 cut(s) 1177, 1395
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 3 cut(s) 1006, 1240, 1337
BoxI GACNNNNGTC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 1043, 1075
Bpu1102I GCTNAGC 1 cut(s) 1254
BpuEI CTTGAG 2 cut(s) 113, 152
BsaHI GRCGYC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 751
BsaJI CCNNGG 3 cut(s) 226, 265, 1306
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse1I ACTGG 2 cut(s) 111, 928
Bse3DI GCAATG 2 cut(s) 363, 1159
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 226, 265, 1306
BseGI GGATG 4 cut(s) 16, 22, 1021, 1328
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 2 cut(s) 363, 1159
BseMII CTCAG 4 cut(s) 484, 600, 1245, 1423
BseNI ACTGG 2 cut(s) 111, 928
BseRI GAGGAG 1 cut(s) 1229
BseXI GCAGC 3 cut(s) 109, 451, 1313
BseYI CCCAGC 1 cut(s) 1178
BsgI GTGCAG 2 cut(s) 450, 605
BshFI GGCC 2 cut(s) 332, 895
BsiHKAI GWGCWC 2 cut(s) 1056, 1362
BslFI GGGAC 2 cut(s) 439, 1161
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 3 cut(s) 605, 751, 1223
BsmBI CGTCTC 1 cut(s) 1223
BsmFI GGGAC 2 cut(s) 439, 1161
BsmI GAATGC 2 cut(s) 81, 848
BsnI GGCC 2 cut(s) 332, 895
Bso31I GGTCTC 1 cut(s) 751
Bsp1286I GDGCHC 4 cut(s) 639, 1056, 1362, 1396
Bsp143I GATC 4 cut(s) 781, 970, 1005, 1111
Bsp1720I GCTNAGC 1 cut(s) 1254
BspACI CCGC 4 cut(s) 60, 99, 869, 1422
BspANI GGCC 2 cut(s) 332, 895
BspCNI CTCAG 4 cut(s) 483, 601, 1246, 1422
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 1177, 1395
BspMI ACCTGC 2 cut(s) 577, 1163
BspPI GGATC 2 cut(s) 978, 1013
BspQI GCTCTTC 1 cut(s) 495
BspTNI GGTCTC 1 cut(s) 751
BsrDI GCAATG 2 cut(s) 363, 1159
BsrI ACTGG 2 cut(s) 111, 928
BssECI CCNNGG 3 cut(s) 226, 265, 1306
BssMI GATC 4 cut(s) 781, 970, 1005, 1111
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 5 cut(s) 266, 349, 616, 674, 1234
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 893, 1375
BstDEI CTNAG 6 cut(s) 405, 470, 609, 987, 1254, 1409
BstDSI CCRYGG 2 cut(s) 265, 1306
BstEII GGTNACC 1 cut(s) 718
BstENI CCTNNNNNAGG 1 cut(s) 584
BstF5I GGATG 4 cut(s) 16, 22, 1021, 1328
BstHHI GCGC 2 cut(s) 127, 1379
BstKTI GATC 4 cut(s) 784, 973, 1008, 1114
BstMAI GTCTC 3 cut(s) 605, 751, 1223
BstMBI GATC 4 cut(s) 781, 970, 1005, 1111
BstMWI GCNNNNNNNGC 3 cut(s) 592, 1132, 1298
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 3 cut(s) 832, 1106, 1167
BstPAI GACNNNNGTC 1 cut(s) 257
BstPI GGTNACC 1 cut(s) 718
BstSCI CCNGG 1 cut(s) 568
BstV1I GCAGC 3 cut(s) 109, 451, 1313
BsuRI GGCC 2 cut(s) 332, 895
BtgI CCRYGG 2 cut(s) 265, 1306
BtrI CACGTC 1 cut(s) 1289
BtsCI GGATG 4 cut(s) 16, 22, 1021, 1328
BtsI GCAGTG 2 cut(s) 1097, 1189
BtsIMutI CAGTG 4 cut(s) 354, 670, 1097, 1189
BveI ACCTGC 2 cut(s) 577, 1163
Cac8I GCNNGC 2 cut(s) 893, 1375
CciI TCATGA 1 cut(s) 85
CfoI GCGC 2 cut(s) 127, 1379
Cfr13I GGNCC 2 cut(s) 1175, 1364
CseI GACGC 1 cut(s) 200
Csp6I GTAC 4 cut(s) 95, 345, 566, 775
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviQI GTAC 4 cut(s) 95, 345, 566, 775
DdeI CTNAG 6 cut(s) 405, 470, 609, 987, 1254, 1409
DpnI GATC 4 cut(s) 783, 972, 1007, 1113
DpnII GATC 4 cut(s) 781, 970, 1005, 1111
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco147I AGGCCT 1 cut(s) 895
Eco24I GRGCYC 2 cut(s) 639, 1396
Eco31I GGTCTC 1 cut(s) 751
Eco47I GGWCC 2 cut(s) 1175, 1364
Eco57I CTGAAG 1 cut(s) 1062
Eco91I GGTNACC 1 cut(s) 718
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 1175
EcoO65I GGTNACC 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 568
EcoT38I GRGCYC 2 cut(s) 639, 1396
Esp3I CGTCTC 1 cut(s) 1223
FaqI GGGAC 2 cut(s) 439, 1161
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 123, 465, 1302
FokI GGATG 4 cut(s) 23, 29, 1028, 1315
FriOI GRGCYC 2 cut(s) 639, 1396
Fsp4HI GCNGC 3 cut(s) 123, 465, 1302
FspBI CTAG 5 cut(s) 563, 932, 951, 963, 1020
GlaI GCGC 2 cut(s) 126, 1378
GluI GCNGC 3 cut(s) 123, 465, 1302
GsaI CCCAGC 1 cut(s) 1182
HaeIII GGCC 2 cut(s) 332, 895
HgaI GACGC 1 cut(s) 200
HhaI GCGC 2 cut(s) 127, 1379
Hin1I GRCGYC 1 cut(s) 192
Hin6I GCGC 2 cut(s) 125, 1377
HinP1I GCGC 2 cut(s) 125, 1377
HincII GTYRAC 2 cut(s) 219, 262
HindII GTYRAC 2 cut(s) 219, 262
HinfI GANTC 5 cut(s) 270, 311, 667, 822, 1094
HpaI GTTAAC 1 cut(s) 219
HphI GGTGA 4 cut(s) 601, 712, 1291, 1367
Hpy166II GTNNAC 6 cut(s) 219, 262, 874, 903, 960, 1187
Hpy188I TCNGA 5 cut(s) 316, 473, 1027, 1116, 1436
Hpy188III TCNNGA 7 cut(s) 86, 608, 785, 932, 974, 1009, 1332
Hpy8I GTNNAC 6 cut(s) 219, 262, 874, 903, 960, 1187
Hpy99I CGWCG 2 cut(s) 194, 1290
HpyAV CCTTC 7 cut(s) 484, 709, 906, 961, 992, 1006, 1377
HpyCH4III ACNGT 5 cut(s) 266, 349, 616, 674, 1234
HpyCH4IV ACGT 2 cut(s) 1118, 1288
HpyF10VI GCNNNNNNNGC 3 cut(s) 592, 1132, 1298
HpyF3I CTNAG 6 cut(s) 405, 470, 609, 987, 1254, 1409
HpySE526I ACGT 2 cut(s) 1118, 1288
Hsp92I GRCGYC 1 cut(s) 192
HspAI GCGC 2 cut(s) 125, 1377
KspAI GTTAAC 1 cut(s) 219
Kzo9I GATC 4 cut(s) 781, 970, 1005, 1111
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 2 cut(s) 112, 1399
Lsp1109I GCAGC 3 cut(s) 109, 451, 1313
LweI GCATC 3 cut(s) 1006, 1240, 1337
MaeI CTAG 5 cut(s) 563, 932, 951, 963, 1020
MaeII ACGT 2 cut(s) 1118, 1288
MaeIII GTNAC 6 cut(s) 536, 558, 674, 718, 1119, 1294
MalI GATC 4 cut(s) 783, 972, 1007, 1113
MboI GATC 4 cut(s) 781, 970, 1005, 1111
MboII GAAGA 6 cut(s) 350, 512, 989, 1046, 1055, 1211
MfeI CAATTG 2 cut(s) 439, 596
MhlI GDGCHC 4 cut(s) 639, 1056, 1362, 1396
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 7 cut(s) 246, 362, 439, 476, 596, 686, 981
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 2 cut(s) 279, 320
MmeI TCCRAC 1 cut(s) 283
Mox20I TGGCCA 1 cut(s) 332
MscI TGGCCA 1 cut(s) 332
MseI TTAA 8 cut(s) 56, 218, 249, 419, 690, 804, 1067, 1236
MslI CAYNNNNRTG 2 cut(s) 762, 1061
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 4 cut(s) 62, 101, 851, 869
MspR9I CCNGG 1 cut(s) 570
MunI CAATTG 2 cut(s) 439, 596
Mva1269I GAATGC 2 cut(s) 81, 848
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 3 cut(s) 592, 1132, 1298
NdeII GATC 4 cut(s) 781, 970, 1005, 1111
NlaIV GGNNCC 2 cut(s) 1177, 1395
NmuCI GTSAC 3 cut(s) 558, 674, 718
NspI RCATGY 3 cut(s) 832, 1106, 1167
PagI TCATGA 1 cut(s) 85
PaqCI CACCTGC 1 cut(s) 577
PceI AGGCCT 1 cut(s) 895
PciI ACATGT 2 cut(s) 828, 1163
PciSI GCTCTTC 1 cut(s) 495
PctI GAATGC 2 cut(s) 81, 848
PfeI GAWTC 3 cut(s) 667, 822, 1094
PkrI GCNGC 3 cut(s) 124, 466, 1303
PleI GAGTC 2 cut(s) 278, 319
PpsI GAGTC 2 cut(s) 278, 319
PpuMI RGGWCCY 1 cut(s) 1175
PscI ACATGT 2 cut(s) 828, 1163
PshAI GACNNNNGTC 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 1175
Psp6I CCWGG 1 cut(s) 568
PspEI GGTNACC 1 cut(s) 718
PspFI CCCAGC 1 cut(s) 1178
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 2 cut(s) 1177, 1395
PspPI GGNCC 2 cut(s) 1175, 1364
PspPPI RGGWCCY 1 cut(s) 1175
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 4 cut(s) 96, 346, 567, 776
RsaNI GTAC 4 cut(s) 95, 345, 566, 775
RseI CAYNNNNRTG 2 cut(s) 762, 1061
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 8 cut(s) 56, 218, 249, 419, 690, 804, 1067, 1236
SatI GCNGC 3 cut(s) 123, 465, 1302
Sau3AI GATC 4 cut(s) 781, 970, 1005, 1111
Sau96I GGNCC 2 cut(s) 1175, 1364
SchI GAGTC 2 cut(s) 279, 320
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 4 cut(s) 639, 1056, 1362, 1396
SfaNI GCATC 3 cut(s) 1006, 1240, 1337
SinI GGWCC 2 cut(s) 1175, 1364
SmiMI CAYNNNNRTG 2 cut(s) 762, 1061
SmlI CTYRAG 2 cut(s) 128, 167
SmoI CTYRAG 2 cut(s) 128, 167
SpeI ACTAGT 1 cut(s) 562
Sse9I AATT 7 cut(s) 246, 362, 439, 476, 596, 686, 981
SseBI AGGCCT 1 cut(s) 895
SsiI CCGC 4 cut(s) 60, 99, 869, 1422
SspMI CTAG 5 cut(s) 563, 932, 951, 963, 1020
StuI AGGCCT 1 cut(s) 895
StyD4I CCNGG 1 cut(s) 568
TaaI ACNGT 5 cut(s) 266, 349, 616, 674, 1234
TaiI ACGT 2 cut(s) 1121, 1291
TaqI TCGA 1 cut(s) 66
TasI AATT 7 cut(s) 246, 362, 439, 476, 596, 686, 981
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 3 cut(s) 667, 822, 1094
Tru1I TTAA 8 cut(s) 56, 218, 249, 419, 690, 804, 1067, 1236
Tru9I TTAA 8 cut(s) 56, 218, 249, 419, 690, 804, 1067, 1236
TscAI CASTG 4 cut(s) 354, 677, 1104, 1189
TseFI GTSAC 3 cut(s) 558, 674, 718
TseI GCWGC 3 cut(s) 122, 464, 1301
Tsp45I GTSAC 3 cut(s) 558, 674, 718
TspGWI ACGGA 1 cut(s) 1377
TspRI CASTG 4 cut(s) 354, 677, 1104, 1189
VpaK11BI GGWCC 2 cut(s) 1175, 1364
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 2 cut(s) 476, 686
XbaI TCTAGA 1 cut(s) 931
XceI RCATGY 3 cut(s) 832, 1106, 1167
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XspI CTAG 5 cut(s) 563, 932, 951, 963, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.