Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002015

Physical Location & Seq

Genomic Coordinates Reverse (-)

9672896 .. 9677345

Gene Structure 4450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G084300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGAAGCTGGACGTGAACATGTTGAGATACCTCTCAAAAGAGGATTTTAGGGTTCTAACTGCTGTGGAAATGGGAATGAGAAATCATGAAATTGTACCCTGTGAGCTGGTGGAGCGCATAGCTTCGCTCAAGCATGGAGGAACTTATAAAGTTCTGAAGAATCTGCTCAAGCATAAGCTCTTGCATCATGACTCGTCTAAATATGATGGGTTTCGGCTCACCTACCTTGGTTATGATTTTCTTGCAATCAAAACTTTGGTCAACCGTGGAGTCTTTGCGTCCGTTGGTCGACAAATTGGTGTAGGGAAAGAGTCTGATATCTTTGAGGTGGCCACGGAAGATGGTACCGTGATGGCAATGAAGTTACACAGACTTGGTAGAGTTTCTTTCAGAGCTGTTAAATCGAAGCGTGATTACTTAAAACATCGTAGCAGTTTTAGTTGGCTCTACTTGTCCCGCCTTGCTGCACTCAAAGAATTTGCTTTTATGAAGGCCTTAGAAGAGCATGGTTTTCCTGTTCCTAATGCTGTGGATTGTAACAGGCATTGTGTCATTATGTCACTAGTACAAGGCTACCCATTCGTGCAGGTGAAGCAATTGCAAAATCCAGAGGTGGTTTTTGAAACAATCATTGGACTTGTTGTTCGCCTCGCCGAACATGGTTTAATTCACTGTGACTTCAATGAATTTAACATCATGATTGATGACGACGAGAAGGTCACCATGATTGATTTTCCGCAAATGGTATCTGTATCACATCATAATGCACAGATGTACTTTGACCGTGATGTTGAATGTGTTTTTAAGTTTTTCAGAAAGAGGTTCAACATGTCTTTTCAAGAATGCACAGATGATAATGATGGAACAGAGGTAGACACAGATGCAAGTGGGAGGCCTTGTTTTTCTTCAATAGCCAAGGATGCTGTTTTTCTGGACAAGGAACTTGCTGCTAGTGGGTTTACTAAGAAGGATCAGGAAGTCGTTGAGAAGTTCATTGAAGGAGGTCTGGAGAAGGATGCTAGTTCTGATGACGAAGGTACTGGAGATGGCACACACATCTCTGAGGAGGATGCTAGTTCTGATGATGAAGATTCCGAAGATGCCACACACATCTCTGTGTTAAATGAAGCAAACATAAAGGGTGTTGATTCATTGCATTTGCTAGATCAGGGTCAGACTTTAAATTTAAAGCATGAAGAGGAAGGAGTAGAGAACAATCTAAGAAACTGTGAAGTAGGTCCAAGCAGTAAACCTGAATCTCAAGATGTGAGTGACAAGGAGGGAGATGATGAGGCTGCAAATGACAATGATGCTGAGCTGGAAAAGCGCTTGAGCAAGGTGAGACGACGTGCTGTAACAGCAGCTCGTGGAAGACGGAAGAATCTTGCCTCCAGAAATACCTACAAAGACAAGGGCGGTAGATCCTCTCAGAGTTCCAAAGTCCAGAGCCAATTAGGCAGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

489

Amino Acids

55.01

Weight (kDa)

5.53

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51270 AT3G51270 AT3G51270 AT3G51270
fragaria_vesca	FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_7g06440 FvH4_7g06440
malus_domestica	MD01G1035500.v1.1 MD02G1001000.v1.1 MD15G1320300.v1.1
prunus_persica	Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1
pyrus_communis	pycom01g06260 pycom15g28140
rosa_chinensis	RchiOBHm_Chr1g0334711 RchiOBHm_Chr7g0210541
rosa_laevigata	RLG00000026279 RLG00000029431
rosa_multiflora	Rmu_sc0002295.1_g000002 Rmu_sc0006031.1_g000024
rosa_roxburghii	Rroxscaffold_3G00236050 Rroxscaffold_4G00279110 Rroxscaffold_4G00316660
rosa_rugosa	Rorug01G0115100 Rorug01G0115200 Rorug07G0122000 Rorug07G0122100 Rorug07G0122100 Rorug07G0122200 Rorug07G0122200
rosa_samantha	Rh1AG140300 Rh1BG107400 Rh1CG132200 Rh1DG144300 Rh7AG254300 Rh7BG249600 Rh7CG271200 Rh7DG262000
rosa_wichuraiana	Rw1G011570 Rw7G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AarI	CACCTGC	1 cut(s)	577
AasI	GACNNNNNNGTC	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	577
Acc65I	GGTACC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	344
AccI	GTMKAC	2 cut(s)	289, 873
AciI	CCGC	3 cut(s)	457, 737, 1416
AclWI	GGATC	2 cut(s)	978, 1416
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	3 cut(s)	476, 686, 1183
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	5 cut(s)	96, 346, 567, 776, 1039
AfeI	AGCGCT	1 cut(s)	1328
AflIII	ACRYGT	2 cut(s)	18, 828
AgsI	TTSAA	7 cut(s)	623, 682, 794, 826, 839, 909, 998
AhlI	ACTAGT	1 cut(s)	562
AjiI	CACGTC	2 cut(s)	13, 1349
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AloI	GAACNNNNNNTCC	2 cut(s)	627, 659
AluBI	AGCT	8 cut(s)	7, 106, 122, 178, 395, 1318, 1364, 1461
AluI	AGCT	8 cut(s)	7, 106, 122, 178, 395, 1318, 1364, 1461
Alw26I	GTCTC	1 cut(s)	1336
AlwI	GGATC	2 cut(s)	978, 1416
Aor51HI	AGCGCT	1 cut(s)	1328
AoxI	GGCC	3 cut(s)	330, 492, 893
ApeKI	GCWGC	5 cut(s)	464, 947, 1295, 1361, 1458
ApoI	RAATTY	3 cut(s)	476, 686, 1183
ArsI	GACNNNNNNTTYG	4 cut(s)	243, 275, 627, 659
Asp718I	GGTACC	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	117, 1329
AspS9I	GGNCC	1 cut(s)	1238
AsuHPI	GGTGA	4 cut(s)	211, 601, 712, 1351
AvaII	GGWCC	1 cut(s)	1238
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	344
BarI	GAAGNNNNNNTAC	2 cut(s)	398, 430
BauI	CACGAG	1 cut(s)	1365
BbsI	GAAGAC	1 cut(s)	1378
BbvI	GCAGC	4 cut(s)	451, 934, 1282, 1373
BccI	CCATC	5 cut(s)	200, 335, 346, 854, 1040
BcoDI	GTCTC	1 cut(s)	1336
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	5 cut(s)	563, 951, 1020, 1074, 1163
BfoI	RGCGCY	1 cut(s)	1330
BfuAI	ACCTGC	1 cut(s)	577
BglI	GCCNNNNNGGC	1 cut(s)	1455
BisI	GCNGC	5 cut(s)	465, 948, 1296, 1362, 1459
BlpI	GCTNAGC	1 cut(s)	1314
BlsI	GCNGC	5 cut(s)	466, 949, 1297, 1363, 1460
Bme18I	GGWCC	1 cut(s)	1238
BmgBI	CACGTC	2 cut(s)	13, 1349
BmgT120I	GGNCC	1 cut(s)	1238
BmiI	GGNNCC	1 cut(s)	346
BmsI	GCATC	7 cut(s)	193, 871, 910, 1006, 1060, 1090, 1300
BpiI	GAAGAC	1 cut(s)	1378
BpmI	CTGGAG	3 cut(s)	1028, 1062, 1375
Bpu1102I	GCTNAGC	1 cut(s)	1314
BpuEI	CTTGAG	4 cut(s)	113, 152, 1245, 1351
BsaJI	CCNNGG	4 cut(s)	226, 265, 333, 915
BsaXI	ACNNNNNCTCC	2 cut(s)	883, 913
Bse1I	ACTGG	1 cut(s)	1045
Bse3DI	GCAATG	2 cut(s)	363, 1151
BseDI	CCNNGG	4 cut(s)	226, 265, 333, 915
BseGI	GGATG	3 cut(s)	925, 1021, 1075
BseMI	GCAATG	2 cut(s)	363, 1151
BseMII	CTCAG	3 cut(s)	1053, 1305, 1442
BseNI	ACTGG	1 cut(s)	1045
BseRI	GAGGAG	1 cut(s)	1079
BseXI	GCAGC	4 cut(s)	451, 934, 1282, 1373
BsgI	GTGCAG	2 cut(s)	450, 605
BshFI	GGCC	3 cut(s)	332, 494, 895
BshNI	GGYRCC	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	1336
BsmBI	CGTCTC	1 cut(s)	1336
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	848
BsnI	GGCC	3 cut(s)	332, 494, 895
Bsp143I	GATC	3 cut(s)	970, 1165, 1421
Bsp1720I	GCTNAGC	1 cut(s)	1314
BspACI	CCGC	3 cut(s)	457, 737, 1416
BspANI	GGCC	3 cut(s)	332, 494, 895
BspCNI	CTCAG	3 cut(s)	1054, 1306, 1441
BspHI	TCATGA	3 cut(s)	85, 187, 696
BspLI	GGNNCC	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	2 cut(s)	978, 1416
BspQI	GCTCTTC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	363, 1151
BsrI	ACTGG	1 cut(s)	1045
BssECI	CCNNGG	4 cut(s)	226, 265, 333, 915
BssMI	GATC	3 cut(s)	970, 1165, 1421
BssSI	CACGAG	1 cut(s)	1365
BssT1I	CCWWGG	2 cut(s)	226, 915
Bst2BI	CACGAG	1 cut(s)	1365
Bst4CI	ACNGT	5 cut(s)	266, 349, 674, 785, 1229
Bst6I	CTCTTC	2 cut(s)	495, 1191
BstDEI	CTNAG	6 cut(s)	496, 963, 1062, 1220, 1314, 1428
BstDSI	CCRYGG	2 cut(s)	265, 333
BstEII	GGTNACC	1 cut(s)	718
BstF5I	GGATG	3 cut(s)	925, 1021, 1075
BstH2I	RGCGCY	1 cut(s)	1330
BstHHI	GCGC	2 cut(s)	117, 1329
BstKTI	GATC	3 cut(s)	973, 1168, 1424
BstMAI	GTCTC	1 cut(s)	1336
BstMBI	GATC	3 cut(s)	970, 1165, 1421
BstMWI	GCNNNNNNNGC	6 cut(s)	112, 592, 920, 1324, 1358, 1455
BstNSI	RCATGY	2 cut(s)	22, 832
BstPI	GGTNACC	1 cut(s)	718
BstV1I	GCAGC	4 cut(s)	451, 934, 1282, 1373
BstV2I	GAAGAC	1 cut(s)	1378
BstX2I	RGATCY	1 cut(s)	1421
BstYI	RGATCY	1 cut(s)	1421
BsuRI	GGCC	3 cut(s)	332, 494, 895
BtgI	CCRYGG	2 cut(s)	265, 333
BtrI	CACGTC	2 cut(s)	13, 1349
BtsCI	GGATG	3 cut(s)	925, 1021, 1075
BtsIMutI	CAGTG	1 cut(s)	670
BveI	ACCTGC	1 cut(s)	577
CciI	TCATGA	3 cut(s)	85, 187, 696
CfoI	GCGC	2 cut(s)	117, 1329
Cfr13I	GGNCC	1 cut(s)	1238
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	5 cut(s)	95, 345, 566, 775, 1038
CviQI	GTAC	5 cut(s)	95, 345, 566, 775, 1038
DdeI	CTNAG	6 cut(s)	496, 963, 1062, 1220, 1314, 1428
DpnI	GATC	3 cut(s)	972, 1167, 1423
DpnII	GATC	3 cut(s)	970, 1165, 1421
DraI	TTTAAA	2 cut(s)	1182, 1188
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	495, 1191
EarI	CTCTTC	2 cut(s)	495, 1191
Eco130I	CCWWGG	2 cut(s)	226, 915
Eco147I	AGGCCT	2 cut(s)	494, 895
Eco32I	GATATC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	1238
Eco47III	AGCGCT	1 cut(s)	1328
Eco57I	CTGAAG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	718
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	226, 915
ErhI	CCWWGG	2 cut(s)	226, 915
Esp3I	CGTCTC	1 cut(s)	1336
FaqI	GGGAC	1 cut(s)	439
FauI	CCCGC	1 cut(s)	464
FblI	GTMKAC	2 cut(s)	289, 873
Fnu4HI	GCNGC	5 cut(s)	465, 948, 1296, 1362, 1459
FokI	GGATG	3 cut(s)	932, 1028, 1082
Fsp4HI	GCNGC	5 cut(s)	465, 948, 1296, 1362, 1459
FspBI	CTAG	5 cut(s)	563, 951, 1020, 1074, 1163
GlaI	GCGC	2 cut(s)	116, 1328
GluI	GCNGC	5 cut(s)	465, 948, 1296, 1362, 1459
GsuI	CTGGAG	3 cut(s)	1028, 1062, 1375
HaeII	RGCGCY	1 cut(s)	1330
HaeIII	GGCC	3 cut(s)	332, 494, 895
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	2 cut(s)	117, 1329
Hin6I	GCGC	2 cut(s)	115, 1327
HinP1I	GCGC	2 cut(s)	115, 1327
HincII	GTYRAC	2 cut(s)	262, 290
HindII	GTYRAC	2 cut(s)	262, 290
HinfI	GANTC	8 cut(s)	160, 191, 270, 311, 1091, 1148, 1256, 1381
HphI	GGTGA	4 cut(s)	211, 601, 712, 1351
Hpy166II	GTNNAC	6 cut(s)	16, 262, 290, 874, 960, 1250
Hpy8I	GTNNAC	6 cut(s)	16, 262, 290, 874, 960, 1250
Hpy99I	CGWCG	2 cut(s)	713, 1350
HpyAV	CCTTC	7 cut(s)	484, 709, 961, 992, 1006, 1028, 1196
HpyCH4III	ACNGT	5 cut(s)	266, 349, 674, 785, 1229
HpyCH4IV	ACGT	2 cut(s)	12, 1348
HpyF10VI	GCNNNNNNNGC	6 cut(s)	112, 592, 920, 1324, 1358, 1455
HpyF3I	CTNAG	6 cut(s)	496, 963, 1062, 1220, 1314, 1428
HpySE526I	ACGT	2 cut(s)	12, 1348
HspAI	GCGC	2 cut(s)	115, 1327
KpnI	GGTACC	1 cut(s)	348
Kzo9I	GATC	3 cut(s)	970, 1165, 1421
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	4 cut(s)	451, 934, 1282, 1373
LweI	GCATC	7 cut(s)	193, 871, 910, 1006, 1060, 1090, 1300
MaeI	CTAG	5 cut(s)	563, 951, 1020, 1074, 1163
MaeII	ACGT	2 cut(s)	12, 1348
MaeIII	GTNAC	7 cut(s)	363, 536, 558, 674, 718, 1271, 1354
MalI	GATC	3 cut(s)	972, 1167, 1423
MboI	GATC	3 cut(s)	970, 1165, 1421
MboII	GAAGA	9 cut(s)	169, 350, 512, 897, 1100, 1109, 1208, 1383, 1390
MfeI	CAATTG	1 cut(s)	596
MflI	RGATCY	1 cut(s)	1421
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	8 cut(s)	90, 294, 476, 596, 666, 686, 1183, 1451
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	3 cut(s)	185, 279, 320
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	8 cut(s)	399, 419, 665, 690, 804, 1121, 1181, 1187
MslI	CAYNNNNRTG	2 cut(s)	762, 1115
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	1461
MunI	CAATTG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	848
MwoI	GCNNNNNNNGC	6 cut(s)	112, 592, 920, 1324, 1358, 1455
NdeII	GATC	3 cut(s)	970, 1165, 1421
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	4 cut(s)	558, 674, 718, 1271
NspI	RCATGY	2 cut(s)	22, 832
PagI	TCATGA	3 cut(s)	85, 187, 696
PaqCI	CACCTGC	1 cut(s)	577
PceI	AGGCCT	2 cut(s)	494, 895
PciI	ACATGT	2 cut(s)	18, 828
PciSI	GCTCTTC	1 cut(s)	495
PctI	GAATGC	1 cut(s)	848
PfeI	GAWTC	5 cut(s)	160, 1091, 1148, 1256, 1381
PkrI	GCNGC	5 cut(s)	466, 949, 1297, 1363, 1460
PleI	GAGTC	3 cut(s)	185, 278, 319
PpsI	GAGTC	3 cut(s)	185, 278, 319
PscI	ACATGT	2 cut(s)	18, 828
PsiI	TTATAA	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	718
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	1238
PsuI	RGATCY	1 cut(s)	1421
PvuII	CAGCTG	1 cut(s)	1461
RsaI	GTAC	5 cut(s)	96, 346, 567, 776, 1039
RsaNI	GTAC	5 cut(s)	95, 345, 566, 775, 1038
RseI	CAYNNNNRTG	2 cut(s)	762, 1115
SalI	GTCGAC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	8 cut(s)	399, 419, 665, 690, 804, 1121, 1181, 1187
SatI	GCNGC	5 cut(s)	465, 948, 1296, 1362, 1459
Sau3AI	GATC	3 cut(s)	970, 1165, 1421
Sau96I	GGNCC	1 cut(s)	1238
SchI	GAGTC	3 cut(s)	185, 279, 320
SfaNI	GCATC	7 cut(s)	193, 871, 910, 1006, 1060, 1090, 1300
SinI	GGWCC	1 cut(s)	1238
SmiMI	CAYNNNNRTG	2 cut(s)	762, 1115
SmlI	CTYRAG	4 cut(s)	128, 167, 1260, 1330
SmoI	CTYRAG	4 cut(s)	128, 167, 1260, 1330
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	8 cut(s)	90, 294, 476, 596, 666, 686, 1183, 1451
SseBI	AGGCCT	2 cut(s)	494, 895
SsiI	CCGC	3 cut(s)	457, 737, 1416
SspMI	CTAG	5 cut(s)	563, 951, 1020, 1074, 1163
StuI	AGGCCT	2 cut(s)	494, 895
StyI	CCWWGG	2 cut(s)	226, 915
TaaI	ACNGT	5 cut(s)	266, 349, 674, 785, 1229
TaiI	ACGT	2 cut(s)	15, 1351
TaqI	TCGA	2 cut(s)	289, 404
TasI	AATT	8 cut(s)	90, 294, 476, 596, 666, 686, 1183, 1451
TatI	WGTACW	2 cut(s)	565, 774
TfiI	GAWTC	5 cut(s)	160, 1091, 1148, 1256, 1381
Tru1I	TTAA	8 cut(s)	399, 419, 665, 690, 804, 1121, 1181, 1187
Tru9I	TTAA	8 cut(s)	399, 419, 665, 690, 804, 1121, 1181, 1187
TscAI	CASTG	1 cut(s)	677
TseFI	GTSAC	4 cut(s)	558, 674, 718, 1271
TseI	GCWGC	5 cut(s)	464, 947, 1295, 1361, 1458
Tsp45I	GTSAC	4 cut(s)	558, 674, 718, 1271
TspGWI	ACGGA	3 cut(s)	271, 350, 1390
TspRI	CASTG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	1238
XapI	RAATTY	3 cut(s)	476, 686, 1183
XceI	RCATGY	2 cut(s)	22, 832
XmiI	GTMKAC	2 cut(s)	289, 873
XspI	CTAG	5 cut(s)	563, 951, 1020, 1074, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.