Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002015

Physical Location & Seq

Genomic Coordinates Forward (+)

6388523 .. 6392614

Gene Structure 4092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGAAGCTGGATGTGAACATGTTGAGATACCTCTGCAAAGATGATTTTAGGGTTCTAACTGCTGTGGAAATGGGGATGAGAAATCATGAAATTGTTCCCTGTGAACTGGTGGATCGCATTGCTTCGCTCAAGCATGGGGGTACTTATAAGGTTCTCAAGAATCTGCTCAGGCATAAGCTCTTGCATCACGACTCATCTAAATATGATGGGTTTCGCCTCACCTATCTTGGTTATGATTTTCTCGCAATTAAGACTCTGGTCAATCGCGGAGTCTTTGTGTCTGTTGGCCGTCAAATTGGCGTAGGAAAAGAGTCTGATATCTTTGAGGTGGCCACAGAAGATGGTACGGTTATGGCAATGAAGTTGCACAGGCTTGGTAGGGTTTCTTTTAGGGCTGTAAAATCTAAGCGTGATTACTTAAAACATCGGAGCAGTTATAGTTGGCTCTACTTGTCCCGCCTTGCTGCACTAAAAGAGTTCGCTTTTATGAAGGCTTTAGAAGAGCATGGCTTTCCTGTTCCTAGTGCTGTGGATTGTAACAGGCATTGTGTGATTATGTCACTTGTACAAGGCTACCCACTTGTACAGGTGAAGCAGTTGCAGAACCCAGAGGTAGTCTTTGAAACAATCATTGGACTTGTTGTTCGCCTTGCAGAGCATGGTTTAATCCACTGTGACTTCAATGAATTTAACATTATGATTGATGATGACGAGAAGGTCACCATGATTGATTTTCCACAAATGGTATCTGTATCACATCATAATGCACAGATGTACTTTGACCGTGATGTTGAATGTGTCTTTAAGTTTTTTAGAAAGAGGTTCAACATGAATTTTCGAGAGTGCAGAGATGATATCGATGGAACAGAGGTAGACACAGATGAAAGTGTGAGGCTTTGTTTTTCTTCCATAGCCAAGGATGCTGTTTTTCTGGACAAGGAACTTGCTGCCCGTGGGTTTACTAGGAACGATCAGGAAGACATTGAGAAGTTCATTGAAGGAAGTTTGGATAAGGATGGTAGTTCTGGTGATGAAGGTGCTGAAGATGGCACGGACGTATCTGTGCTAAATGAAGCGAACATAGAGGGTGTTGATTCATTGCATTTGGTAGATCAGGATCAGACTTCAAATTTAAAGCAGGAAGAGGAAGGAGTAGAGGACAATCTAAGAAGCTGTGAAGCAGGCCCGAGCAGTAAACCCGAATGTGAAGATGTGAGTGACAAGGAGGGAGATAATGACACTGAAAAGGACAATGATGCGGAGCTGCTAAAGCGCTTGAACAAGCAGAGACGACGTGCCATGTCAGCAGCCCGTGGGCGACGGAAGACTCTTTCCTCCAGAAATACCTACAAAGATAAGGGCGGCAGATCCTCAACCAGTTGCAAAATTCAGCATCAATTAAGCAGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

471

Amino Acids

53.57

Weight (kDa)

5.75

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rio2_N	PF09202	8 - 89	6e-33	Rio2, N-terminal
RIO1	PF01163	106 - 278	4.3e-55	RIO domain
ABC1	PF03109	170 - 260	2.3e-07	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51270 AT3G51270 AT3G51270 AT3G51270
fragaria_vesca	FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_7g06440 FvH4_7g06440
malus_domestica	MD01G1035500.v1.1 MD02G1001000.v1.1 MD15G1320300.v1.1
prunus_persica	Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1
pyrus_communis	pycom01g06260 pycom15g28140
rosa_chinensis	RchiOBHm_Chr1g0334711 RchiOBHm_Chr7g0210541
rosa_laevigata	RLG00000026279 RLG00000029431
rosa_multiflora	Rmu_sc0002295.1_g000002 Rmu_sc0006031.1_g000024
rosa_roxburghii	Rroxscaffold_3G00236050 Rroxscaffold_4G00279110 Rroxscaffold_4G00316660
rosa_rugosa	Rorug01G0115100 Rorug01G0115200 Rorug07G0122000 Rorug07G0122100 Rorug07G0122100 Rorug07G0122200 Rorug07G0122200
rosa_samantha	Rh1AG140300 Rh1BG107400 Rh1CG132200 Rh1DG144300 Rh7AG254300 Rh7BG249600 Rh7CG271200 Rh7DG262000
rosa_wichuraiana	Rw1G011570 Rw7G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AasI	GACNNNNNNGTC	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	1 cut(s)	267
AciI	CCGC	4 cut(s)	267, 457, 1259, 1362
AclWI	GGATC	3 cut(s)	120, 1125, 1362
AcoI	YGGCCR	2 cut(s)	286, 330
AcsI	RAATTY	4 cut(s)	686, 832, 1129, 1386
AcuI	CTGAAG	1 cut(s)	1062
AfaI	GTAC	5 cut(s)	142, 346, 567, 585, 776
AfeI	AGCGCT	1 cut(s)	1274
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	7 cut(s)	623, 682, 794, 826, 998, 1128, 1279
AjiI	CACGTC	1 cut(s)	1295
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AloI	GAACNNNNNNTCC	2 cut(s)	627, 659
AluBI	AGCT	5 cut(s)	7, 178, 1173, 1264, 1407
AluI	AGCT	5 cut(s)	7, 178, 1173, 1264, 1407
Alw26I	GTCTC	1 cut(s)	1282
AlwI	GGATC	3 cut(s)	120, 1125, 1362
Ama87I	CYCGRG	1 cut(s)	1186
Aor51HI	AGCGCT	1 cut(s)	1274
AoxI	GGCC	3 cut(s)	286, 330, 1183
ApeKI	GCWGC	5 cut(s)	464, 947, 1264, 1307, 1404
ApoI	RAATTY	4 cut(s)	686, 832, 1129, 1386
ArsI	GACNNNNNNTTYG	2 cut(s)	627, 659
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	1275
AspS9I	GGNCC	1 cut(s)	1184
AsuHPI	GGTGA	4 cut(s)	211, 601, 712, 1040
AvaI	CYCGRG	1 cut(s)	1186
BaeI	ACNNNNGTAYC	2 cut(s)	1041, 1074
BalI	TGGCCA	1 cut(s)	332
BbsI	GAAGAC	2 cut(s)	984, 1331
BbvI	GCAGC	4 cut(s)	451, 934, 1251, 1319
BccI	CCATC	5 cut(s)	200, 335, 854, 1010, 1040
BceAI	ACGGC	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	1282
BfaI	CTAG	2 cut(s)	522, 963
BfoI	RGCGCY	1 cut(s)	1276
BisI	GCNGC	6 cut(s)	465, 948, 1265, 1308, 1363, 1405
BlsI	GCNGC	6 cut(s)	466, 949, 1266, 1309, 1364, 1406
BmeT110I	CYCGRG	1 cut(s)	1186
BmgBI	CACGTC	1 cut(s)	1295
BmgT120I	GGNCC	1 cut(s)	1184
BmsI	GCATC	4 cut(s)	193, 910, 1246, 1402
BoxI	GACNNNNGTC	1 cut(s)	257
BpiI	GAAGAC	2 cut(s)	984, 1331
BpmI	CTGGAG	1 cut(s)	1321
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	113, 140
Bsa29I	ATCGAT	1 cut(s)	858
BsaBI	GATNNNNATC	1 cut(s)	1116
BsaJI	CCNNGG	3 cut(s)	915, 952, 1312
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse1I	ACTGG	2 cut(s)	111, 1377
Bse3DI	GCAATG	3 cut(s)	117, 363, 1097
Bse8I	GATNNNNATC	1 cut(s)	1116
BseCI	ATCGAT	1 cut(s)	858
BseDI	CCNNGG	3 cut(s)	915, 952, 1312
BseGI	GGATG	4 cut(s)	16, 81, 925, 1021
BseJI	GATNNNNATC	1 cut(s)	1116
BseMI	GCAATG	3 cut(s)	117, 363, 1097
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	2 cut(s)	111, 1377
BseXI	GCAGC	4 cut(s)	451, 934, 1251, 1319
BsgI	GTGCAG	2 cut(s)	450, 865
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	288, 332, 1185
BshVI	ATCGAT	1 cut(s)	858
BsiHKCI	CYCGRG	1 cut(s)	1186
BslFI	GGGAC	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	1282
BsmBI	CGTCTC	1 cut(s)	1282
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	3 cut(s)	288, 332, 1185
BsoBI	CYCGRG	1 cut(s)	1186
Bsp1407I	TGTACA	2 cut(s)	565, 583
Bsp143I	GATC	5 cut(s)	112, 970, 1111, 1117, 1367
BspACI	CCGC	4 cut(s)	267, 457, 1259, 1362
BspANI	GGCC	3 cut(s)	288, 332, 1185
BspCNI	CTCAG	1 cut(s)	180
BspDI	ATCGAT	1 cut(s)	858
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	85
BspPI	GGATC	3 cut(s)	120, 1125, 1362
BspQI	GCTCTTC	1 cut(s)	495
BsrDI	GCAATG	3 cut(s)	117, 363, 1097
BsrGI	TGTACA	2 cut(s)	565, 583
BsrI	ACTGG	2 cut(s)	111, 1377
BssECI	CCNNGG	3 cut(s)	915, 952, 1312
BssMI	GATC	5 cut(s)	112, 970, 1111, 1117, 1367
BssT1I	CCWWGG	1 cut(s)	915
Bst4CI	ACNGT	3 cut(s)	349, 674, 785
Bst6I	CTCTTC	2 cut(s)	495, 1137
BstAUI	TGTACA	2 cut(s)	565, 583
BstC8I	GCNNGC	1 cut(s)	1183
BstDEI	CTNAG	3 cut(s)	167, 405, 1166
BstDSI	CCRYGG	2 cut(s)	952, 1312
BstEII	GGTNACC	1 cut(s)	718
BstF5I	GGATG	4 cut(s)	16, 81, 925, 1021
BstFNI	CGCG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	1276
BstHHI	GCGC	1 cut(s)	1275
BstKTI	GATC	5 cut(s)	115, 973, 1114, 1120, 1370
BstMAI	GTCTC	1 cut(s)	1282
BstMBI	GATC	5 cut(s)	112, 970, 1111, 1117, 1367
BstMWI	GCNNNNNNNGC	3 cut(s)	920, 1270, 1304
BstNSI	RCATGY	1 cut(s)	22
BstPAI	GACNNNNGTC	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	718
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	4 cut(s)	451, 934, 1251, 1319
BstV2I	GAAGAC	2 cut(s)	984, 1331
BstX2I	RGATCY	1 cut(s)	1367
BstYI	RGATCY	1 cut(s)	1367
Bsu15I	ATCGAT	1 cut(s)	858
BsuRI	GGCC	3 cut(s)	288, 332, 1185
BsuTUI	ATCGAT	1 cut(s)	858
BtgI	CCRYGG	2 cut(s)	952, 1312
BtrI	CACGTC	1 cut(s)	1295
BtsCI	GGATG	4 cut(s)	16, 81, 925, 1021
BtsIMutI	CAGTG	2 cut(s)	670, 1239
Cac8I	GCNNGC	1 cut(s)	1183
CciI	TCATGA	1 cut(s)	85
CfoI	GCGC	1 cut(s)	1275
Cfr13I	GGNCC	1 cut(s)	1184
ClaI	ATCGAT	1 cut(s)	858
Csp6I	GTAC	5 cut(s)	141, 345, 566, 584, 775
CviAII	CATG	8 cut(s)	19, 86, 134, 506, 659, 724, 829, 1300
CviQI	GTAC	5 cut(s)	141, 345, 566, 584, 775
DdeI	CTNAG	3 cut(s)	167, 405, 1166
DpnI	GATC	5 cut(s)	114, 972, 1113, 1119, 1369
DpnII	GATC	5 cut(s)	112, 970, 1111, 1117, 1367
DraI	TTTAAA	1 cut(s)	1134
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
EaeI	YGGCCR	2 cut(s)	286, 330
Eam1104I	CTCTTC	2 cut(s)	495, 1137
EarI	CTCTTC	2 cut(s)	495, 1137
Eco130I	CCWWGG	1 cut(s)	915
Eco32I	GATATC	2 cut(s)	319, 856
Eco47III	AGCGCT	1 cut(s)	1274
Eco57I	CTGAAG	1 cut(s)	1062
Eco88I	CYCGRG	1 cut(s)	1186
Eco91I	GGTNACC	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	718
EcoRV	GATATC	2 cut(s)	319, 856
EcoT14I	CCWWGG	1 cut(s)	915
ErhI	CCWWGG	1 cut(s)	915
Esp3I	CGTCTC	1 cut(s)	1282
FaeI	CATG	8 cut(s)	22, 89, 137, 509, 662, 727, 832, 1303
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	8 cut(s)	18, 85, 133, 505, 658, 723, 828, 1299
FauI	CCCGC	1 cut(s)	464
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	6 cut(s)	465, 948, 1265, 1308, 1363, 1405
FokI	GGATG	4 cut(s)	23, 88, 932, 1028
Fsp4HI	GCNGC	6 cut(s)	465, 948, 1265, 1308, 1363, 1405
FspBI	CTAG	2 cut(s)	522, 963
GlaI	GCGC	1 cut(s)	1274
GluI	GCNGC	6 cut(s)	465, 948, 1265, 1308, 1363, 1405
GsuI	CTGGAG	1 cut(s)	1321
HaeII	RGCGCY	1 cut(s)	1276
HaeIII	GGCC	3 cut(s)	288, 332, 1185
HhaI	GCGC	1 cut(s)	1275
Hin1II	CATG	8 cut(s)	22, 89, 137, 509, 662, 727, 832, 1303
Hin6I	GCGC	1 cut(s)	1273
HinP1I	GCGC	1 cut(s)	1273
HinfI	GANTC	7 cut(s)	160, 191, 253, 270, 311, 1094, 1327
HphI	GGTGA	4 cut(s)	211, 601, 712, 1040
Hpy166II	GTNNAC	5 cut(s)	16, 104, 874, 960, 1196
Hpy188I	TCNGA	3 cut(s)	316, 429, 1122
Hpy188III	TCNNGA	8 cut(s)	86, 157, 188, 839, 932, 974, 1115, 1338
Hpy8I	GTNNAC	5 cut(s)	16, 104, 874, 960, 1196
Hpy99I	CGWCG	2 cut(s)	1296, 1323
HpyAV	CCTTC	5 cut(s)	484, 709, 992, 1028, 1142
HpyCH4III	ACNGT	3 cut(s)	349, 674, 785
HpyCH4IV	ACGT	2 cut(s)	1056, 1294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	920, 1270, 1304
HpyF3I	CTNAG	3 cut(s)	167, 405, 1166
HpySE526I	ACGT	2 cut(s)	1056, 1294
Hsp92II	CATG	8 cut(s)	22, 89, 137, 509, 662, 727, 832, 1303
HspAI	GCGC	1 cut(s)	1273
Kzo9I	GATC	5 cut(s)	112, 970, 1111, 1117, 1367
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	2 cut(s)	429, 1261
Lsp1109I	GCAGC	4 cut(s)	451, 934, 1251, 1319
LweI	GCATC	4 cut(s)	193, 910, 1246, 1402
MaeI	CTAG	2 cut(s)	522, 963
MaeII	ACGT	2 cut(s)	1056, 1294
MaeIII	GTNAC	5 cut(s)	536, 558, 674, 718, 1217
MalI	GATC	5 cut(s)	114, 972, 1113, 1119, 1369
MboI	GATC	5 cut(s)	112, 970, 1111, 1117, 1367
MboII	GAAGA	8 cut(s)	350, 512, 897, 989, 1055, 1154, 1220, 1336
MflI	RGATCY	1 cut(s)	1367
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	8 cut(s)	90, 246, 294, 686, 832, 1129, 1386, 1397
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	5 cut(s)	185, 247, 279, 320, 1321
Mox20I	TGGCCA	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	7 cut(s)	249, 419, 665, 690, 804, 1133, 1400
MslI	CAYNNNNRTG	1 cut(s)	762
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	1407
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	3 cut(s)	920, 1270, 1304
NdeII	GATC	5 cut(s)	112, 970, 1111, 1117, 1367
NlaIII	CATG	8 cut(s)	22, 89, 137, 509, 662, 727, 832, 1303
NmuCI	GTSAC	4 cut(s)	558, 674, 718, 1217
NspI	RCATGY	1 cut(s)	22
PagI	TCATGA	1 cut(s)	85
PciI	ACATGT	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	160, 1094
PkrI	GCNGC	6 cut(s)	466, 949, 1266, 1309, 1364, 1406
PleI	GAGTC	5 cut(s)	185, 247, 278, 319, 1321
PpsI	GAGTC	5 cut(s)	185, 247, 278, 319, 1321
PscI	ACATGT	1 cut(s)	18
PshAI	GACNNNNGTC	1 cut(s)	257
PsiI	TTATAA	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	718
PspPI	GGNCC	1 cut(s)	1184
PsuI	RGATCY	1 cut(s)	1367
PvuII	CAGCTG	1 cut(s)	1407
RsaI	GTAC	5 cut(s)	142, 346, 567, 585, 776
RsaNI	GTAC	5 cut(s)	141, 345, 566, 584, 775
RseI	CAYNNNNRTG	1 cut(s)	762
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	7 cut(s)	249, 419, 665, 690, 804, 1133, 1400
SatI	GCNGC	6 cut(s)	465, 948, 1265, 1308, 1363, 1405
Sau3AI	GATC	5 cut(s)	112, 970, 1111, 1117, 1367
Sau96I	GGNCC	1 cut(s)	1184
SchI	GAGTC	5 cut(s)	185, 247, 279, 320, 1321
SfaNI	GCATC	4 cut(s)	193, 910, 1246, 1402
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	2 cut(s)	128, 155
SmoI	CTYRAG	2 cut(s)	128, 155
Sse9I	AATT	8 cut(s)	90, 246, 294, 686, 832, 1129, 1386, 1397
SsiI	CCGC	4 cut(s)	267, 457, 1259, 1362
SspMI	CTAG	2 cut(s)	522, 963
StyI	CCWWGG	1 cut(s)	915
TaaI	ACNGT	3 cut(s)	349, 674, 785
TaiI	ACGT	2 cut(s)	1059, 1297
TaqI	TCGA	2 cut(s)	838, 858
TasI	AATT	8 cut(s)	90, 246, 294, 686, 832, 1129, 1386, 1397
TatI	WGTACW	3 cut(s)	565, 583, 774
TauI	GCSGC	1 cut(s)	1365
TfiI	GAWTC	2 cut(s)	160, 1094
Tru1I	TTAA	7 cut(s)	249, 419, 665, 690, 804, 1133, 1400
Tru9I	TTAA	7 cut(s)	249, 419, 665, 690, 804, 1133, 1400
TscAI	CASTG	2 cut(s)	677, 1246
TseFI	GTSAC	4 cut(s)	558, 674, 718, 1217
TseI	GCWGC	5 cut(s)	464, 947, 1264, 1307, 1404
Tsp45I	GTSAC	4 cut(s)	558, 674, 718, 1217
TspGWI	ACGGA	2 cut(s)	1067, 1336
TspRI	CASTG	2 cut(s)	677, 1246
XapI	RAATTY	4 cut(s)	686, 832, 1129, 1386
XceI	RCATGY	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	873
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	2 cut(s)	522, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.