Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002015

Physical Location & Seq

Genomic Coordinates Forward (+)

14458478 .. 14463043

Gene Structure 4566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10760.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGAAGCTGGATGTGGATGTGTTGAGATACCTCACGAAAGAGGATTTTAGGGTATTAACTGCTGTCGAAATGGGAATGAGAAATCATGAAGTTGTACCCTCTGAACTTGTGGAGCGTATAGCTGCACTCAAGCATGGTGGCACTTATAAAGTTATGAAAAATTTGCTCAAGCATAAGCTCTTGCACCACGACGCCTCTAAATATGATGGGTTTCGGCTAACATATCTCGGTTATGATTTTCTTGCAATTAAGACTTTGGTCAACCGCGGAGTCTTTTCAGCCGTTGGTCGTCAACTTGGTGTTGGAAAAGAGTCTGATATTTTTGAGGTGGCCACCGAAGATGGTACAGTGATGGCCATGAAGTTGCACAGGCTTGGTAGAACTTCTTTCAGGGCTGTCAAGTCTAAGCGTGATTACCTAAAACACCGTAGCAGTTTCAATTGGCTATACTTGTCCCATCTTGCAGCACTCAGAGAATTTTCTTTTATGAAGGCTTTAGAAGAGCATGGTTTTCCTGTTCCAAATGCTATAGATTGTAACAGGCATTGTGTGATTATGTCACTAGTACCTGGCTACCCACTTGTGCAGGTGAAGCAGTTGGAAAATCCCGAGATAGTTTTCAATACTATCATTGGGCTCGTTGTTCGTCTGGCAGAACATGGTTTGATTCACTGTGACTTCAATGAGTTTAACATTATGATTGATGATGATGAGAAGAGCACCATGATTGATTTTCCACAAATGGTCTCTGTATCACACCGTAATGCTCAAATGTACTTTGACCGTGATGTGGAATGTGTCTTTAAGTTTTTCAGTAAGAGGTTCAATATGTCTTTCCATGAATGCACAGCTGATATTGATGGCTCAGCGGTAGACACAGATGATAGTGGCAGGCCTTCTTTTACTTCAGTAGCGAAGGATACTGGTTTTCTTGACAAGGAACTTTCTGCCAGCGGGTTTACTAAAAAGGACCAGGAAGAAATTTCTAAGTTTATTGAAGGAGGGATCAAGAAGGATGCTAGTTCTGATGATGAAGATACTGAAGATGACGAATACATCTCTATGTTAAATGAAGCAAACACAATCGGTGTTGATTCGCTACATATGGTAGATCAGGAGAGATACAGTGAGACGGTTAATAACGACTATGATGTTGAGCTGGTAAAACGATTGAACAAGGTGAGGCAAAATGCTGTAACAGTAGCCCGTGGAGGACAAAAAACTTTTGCATCCAGAAACGCCTACAAAGACAAGGGTGGTAAATCCTCTAACAGTTCCAAAGTCCAAAGACAATTAAGTAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

436

Amino Acids

49.43

Weight (kDa)

6.13

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rio2_N	PF09202	8 - 89	3.7e-34	Rio2, N-terminal
RIO1	PF01163	106 - 280	7e-54	RIO domain
ABC1	PF03109	170 - 260	9.7e-07	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51270 AT3G51270 AT3G51270 AT3G51270
fragaria_vesca	FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_7g06440 FvH4_7g06440
malus_domestica	MD01G1035500.v1.1 MD02G1001000.v1.1 MD15G1320300.v1.1
prunus_persica	Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1
pyrus_communis	pycom01g06260 pycom15g28140
rosa_chinensis	RchiOBHm_Chr1g0334711 RchiOBHm_Chr7g0210541
rosa_laevigata	RLG00000026279 RLG00000029431
rosa_multiflora	Rmu_sc0002295.1_g000002 Rmu_sc0006031.1_g000024
rosa_roxburghii	Rroxscaffold_3G00236050 Rroxscaffold_4G00279110 Rroxscaffold_4G00316660
rosa_rugosa	Rorug01G0115100 Rorug01G0115200 Rorug07G0122000 Rorug07G0122100 Rorug07G0122100 Rorug07G0122200 Rorug07G0122200
rosa_samantha	Rh1AG140300 Rh1BG107400 Rh1CG132200 Rh1DG144300 Rh7AG254300 Rh7BG249600 Rh7CG271200 Rh7DG262000
rosa_wichuraiana	Rw1G011570 Rw7G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AarI	CACCTGC	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	1 cut(s)	267
AciI	CCGC	4 cut(s)	265, 267, 869, 954
AclWI	GGATC	1 cut(s)	1013
AcoI	YGGCCR	2 cut(s)	330, 354
AcsI	RAATTY	3 cut(s)	160, 476, 981
AcuI	CTGAAG	2 cut(s)	891, 1062
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	4 cut(s)	96, 346, 567, 776
AfiI	CCNNNNNNNGG	1 cut(s)	790
AgsI	TTSAA	6 cut(s)	439, 622, 682, 826, 998, 1174
AhlI	ACTAGT	1 cut(s)	562
AjnI	CCWGG	2 cut(s)	568, 972
AluBI	AGCT	6 cut(s)	7, 122, 178, 851, 1159, 1302
AluI	AGCT	6 cut(s)	7, 122, 178, 851, 1159, 1302
Alw21I	GWGCWC	1 cut(s)	722
Alw26I	GTCTC	2 cut(s)	751, 1124
AlwI	GGATC	1 cut(s)	1013
Ama87I	CYCGRG	1 cut(s)	608
AoxI	GGCC	3 cut(s)	330, 354, 893
ApeKI	GCWGC	2 cut(s)	122, 464
ApoI	RAATTY	3 cut(s)	160, 476, 981
AspS9I	GGNCC	1 cut(s)	970
AsuHPI	GGTGA	2 cut(s)	601, 1192
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	970
BalI	TGGCCA	2 cut(s)	332, 356
BanII	GRGCYC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	722
BbvI	GCAGC	2 cut(s)	109, 476
BccI	CCATC	5 cut(s)	200, 335, 346, 465, 854
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	2 cut(s)	570, 974
BciVI	GTATCC	1 cut(s)	913
BcoDI	GTCTC	2 cut(s)	751, 1124
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	2 cut(s)	563, 1020
BfmI	CTRYAG	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	577
BfuI	GTATCC	1 cut(s)	913
BisI	GCNGC	2 cut(s)	123, 465
BlpI	GCTNAGC	1 cut(s)	865
BlsI	GCNGC	2 cut(s)	124, 466
Bme1390I	CCNGG	2 cut(s)	570, 974
Bme18I	GGWCC	1 cut(s)	970
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	970
BmrFI	CCNGG	2 cut(s)	570, 974
BmsI	GCATC	2 cut(s)	1006, 1238
BoxI	GACNNNNGTC	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	865
BpuEI	CTTGAG	2 cut(s)	113, 152
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	751
BsaJI	CCNNGG	2 cut(s)	265, 1207
Bsc4I	CCNNNNNNNGG	1 cut(s)	790
Bse1I	ACTGG	1 cut(s)	928
BseBI	CCWGG	2 cut(s)	570, 974
BseDI	CCNNGG	2 cut(s)	265, 1207
BseGI	GGATG	4 cut(s)	16, 22, 1021, 1229
BseLI	CCNNNNNNNGG	1 cut(s)	790
BseMII	CTCAG	2 cut(s)	484, 879
BseNI	ACTGG	1 cut(s)	928
BseXI	GCAGC	2 cut(s)	109, 476
BsgI	GTGCAG	2 cut(s)	108, 605
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	332, 356, 895
BsiHKAI	GWGCWC	1 cut(s)	722
BsiHKCI	CYCGRG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	790
BsmAI	GTCTC	2 cut(s)	751, 1124
BsmBI	CGTCTC	1 cut(s)	1124
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	848
BsnI	GGCC	3 cut(s)	332, 356, 895
Bso31I	GGTCTC	1 cut(s)	751
BsoBI	CYCGRG	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	639, 722
Bsp143I	GATC	2 cut(s)	1005, 1111
Bsp1720I	GCTNAGC	1 cut(s)	865
BspACI	CCGC	4 cut(s)	265, 267, 869, 954
BspANI	GGCC	3 cut(s)	332, 356, 895
BspCNI	CTCAG	2 cut(s)	483, 878
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	1013
BspQI	GCTCTTC	2 cut(s)	495, 710
BspTNI	GGTCTC	1 cut(s)	751
BsrI	ACTGG	1 cut(s)	928
BssECI	CCNNGG	2 cut(s)	265, 1207
BssMI	GATC	2 cut(s)	1005, 1111
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	570, 974
Bst4CI	ACNGT	9 cut(s)	349, 428, 674, 761, 785, 1127, 1135, 1201, 1274
Bst6I	CTCTTC	2 cut(s)	495, 710
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	893, 952
BstDEI	CTNAG	4 cut(s)	405, 470, 865, 987
BstDSI	CCRYGG	2 cut(s)	265, 1207
BstF5I	GGATG	4 cut(s)	16, 22, 1021, 1229
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	2 cut(s)	1008, 1114
BstMAI	GTCTC	2 cut(s)	751, 1124
BstMBI	GATC	2 cut(s)	1005, 1111
BstMWI	GCNNNNNNNGC	1 cut(s)	592
BstNI	CCWGG	2 cut(s)	570, 974
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	568, 972
BstSFI	CTRYAG	1 cut(s)	528
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	109, 476
BsuI	GTATCC	1 cut(s)	913
BsuRI	GGCC	3 cut(s)	332, 356, 895
BtgI	CCRYGG	2 cut(s)	265, 1207
BtsCI	GGATG	4 cut(s)	16, 22, 1021, 1229
BtsIMutI	CAGTG	3 cut(s)	354, 670, 1132
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	893, 952
CciI	TCATGA	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	970
Cfr42I	CCGCGG	1 cut(s)	268
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	4 cut(s)	95, 345, 566, 775
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	7 cut(s)	86, 134, 358, 506, 659, 724, 839
CviQI	GTAC	4 cut(s)	95, 345, 566, 775
DdeI	CTNAG	4 cut(s)	405, 470, 865, 987
DpnI	GATC	2 cut(s)	1007, 1113
DpnII	GATC	2 cut(s)	1005, 1111
EaeI	YGGCCR	2 cut(s)	330, 354
Eam1104I	CTCTTC	2 cut(s)	495, 710
EarI	CTCTTC	2 cut(s)	495, 710
Eco147I	AGGCCT	1 cut(s)	895
Eco24I	GRGCYC	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	970
Eco57I	CTGAAG	2 cut(s)	891, 1062
Eco88I	CYCGRG	1 cut(s)	608
EcoRII	CCWGG	2 cut(s)	568, 972
EcoT38I	GRGCYC	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	1124
FaeI	CATG	7 cut(s)	89, 137, 361, 509, 662, 727, 842
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	7 cut(s)	85, 133, 357, 505, 658, 723, 838
FauI	CCCGC	1 cut(s)	947
FauNDI	CATATG	1 cut(s)	1104
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	2 cut(s)	123, 465
FokI	GGATG	4 cut(s)	23, 29, 1028, 1216
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	2 cut(s)	123, 465
FspBI	CTAG	2 cut(s)	563, 1020
GluI	GCNGC	2 cut(s)	123, 465
HaeIII	GGCC	3 cut(s)	332, 356, 895
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	7 cut(s)	89, 137, 361, 509, 662, 727, 842
HincII	GTYRAC	2 cut(s)	262, 293
HindII	GTYRAC	2 cut(s)	262, 293
HinfI	GANTC	4 cut(s)	270, 311, 667, 1094
HphI	GGTGA	2 cut(s)	601, 1192
Hpy166II	GTNNAC	4 cut(s)	262, 293, 874, 960
Hpy188I	TCNGA	4 cut(s)	103, 316, 473, 1027
Hpy188III	TCNNGA	7 cut(s)	34, 86, 608, 932, 1009, 1115, 1233
Hpy8I	GTNNAC	4 cut(s)	262, 293, 874, 960
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	5 cut(s)	484, 906, 910, 992, 1006
HpyCH4III	ACNGT	9 cut(s)	349, 428, 674, 761, 785, 1127, 1135, 1201, 1274
HpyCH4V	TGCA	8 cut(s)	125, 184, 245, 367, 464, 586, 846, 1229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	592
HpyF3I	CTNAG	4 cut(s)	405, 470, 865, 987
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	7 cut(s)	89, 137, 361, 509, 662, 727, 842
KspI	CCGCGG	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	1005, 1111
LguI	GCTCTTC	2 cut(s)	495, 710
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	109, 476
LweI	GCATC	2 cut(s)	1006, 1238
MaeI	CTAG	2 cut(s)	563, 1020
MaeIII	GTNAC	4 cut(s)	536, 558, 674, 1195
MalI	GATC	2 cut(s)	1007, 1113
MboI	GATC	2 cut(s)	1005, 1111
MboII	GAAGA	6 cut(s)	350, 512, 727, 989, 1046, 1055
MfeI	CAATTG	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	639, 722
MlsI	TGGCCA	2 cut(s)	332, 356
MluCI	AATT	6 cut(s)	160, 246, 439, 476, 981, 1292
MluNI	TGGCCA	2 cut(s)	332, 356
MlyI	GAGTC	2 cut(s)	279, 320
MmeI	TCCRAC	2 cut(s)	283, 579
Mox20I	TGGCCA	2 cut(s)	332, 356
MscI	TGGCCA	2 cut(s)	332, 356
MseI	TTAA	7 cut(s)	56, 249, 690, 804, 1067, 1137, 1295
MslI	CAYNNNNRTG	2 cut(s)	762, 1061
Msp20I	TGGCCA	2 cut(s)	332, 356
MspA1I	CMGCKG	4 cut(s)	267, 851, 869, 954
MspR9I	CCNGG	2 cut(s)	570, 974
MunI	CAATTG	1 cut(s)	439
Mva1269I	GAATGC	1 cut(s)	848
MvaI	CCWGG	2 cut(s)	570, 974
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	592
NdeI	CATATG	1 cut(s)	1104
NdeII	GATC	2 cut(s)	1005, 1111
NlaIII	CATG	7 cut(s)	89, 137, 361, 509, 662, 727, 842
NmuCI	GTSAC	2 cut(s)	558, 674
PagI	TCATGA	1 cut(s)	85
PaqCI	CACCTGC	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	895
PciSI	GCTCTTC	2 cut(s)	495, 710
PctI	GAATGC	1 cut(s)	848
PfeI	GAWTC	2 cut(s)	667, 1094
PkrI	GCNGC	2 cut(s)	124, 466
PleI	GAGTC	2 cut(s)	278, 319
PpsI	GAGTC	2 cut(s)	278, 319
PshAI	GACNNNNGTC	1 cut(s)	257
PsiI	TTATAA	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	568, 972
PspGI	CCWGG	2 cut(s)	568, 972
PspPI	GGNCC	1 cut(s)	970
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	4 cut(s)	96, 346, 567, 776
RsaNI	GTAC	4 cut(s)	95, 345, 566, 775
RseI	CAYNNNNRTG	2 cut(s)	762, 1061
SacII	CCGCGG	1 cut(s)	268
SapI	GCTCTTC	2 cut(s)	495, 710
SaqAI	TTAA	7 cut(s)	56, 249, 690, 804, 1067, 1137, 1295
SatI	GCNGC	2 cut(s)	123, 465
Sau3AI	GATC	2 cut(s)	1005, 1111
Sau96I	GGNCC	1 cut(s)	970
SchI	GAGTC	2 cut(s)	279, 320
ScrFI	CCNGG	2 cut(s)	570, 974
SduI	GDGCHC	2 cut(s)	639, 722
SfaNI	GCATC	2 cut(s)	1006, 1238
SfcI	CTRYAG	1 cut(s)	528
Sfr303I	CCGCGG	1 cut(s)	268
SgrBI	CCGCGG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	970
SmiMI	CAYNNNNRTG	2 cut(s)	762, 1061
SmlI	CTYRAG	2 cut(s)	128, 167
SmoI	CTYRAG	2 cut(s)	128, 167
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	6 cut(s)	160, 246, 439, 476, 981, 1292
SseBI	AGGCCT	1 cut(s)	895
SsiI	CCGC	4 cut(s)	265, 267, 869, 954
SspMI	CTAG	2 cut(s)	563, 1020
StuI	AGGCCT	1 cut(s)	895
StyD4I	CCNGG	2 cut(s)	568, 972
TaaI	ACNGT	9 cut(s)	349, 428, 674, 761, 785, 1127, 1135, 1201, 1274
TaqI	TCGA	1 cut(s)	66
TasI	AATT	6 cut(s)	160, 246, 439, 476, 981, 1292
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	2 cut(s)	667, 1094
Tru1I	TTAA	7 cut(s)	56, 249, 690, 804, 1067, 1137, 1295
Tru9I	TTAA	7 cut(s)	56, 249, 690, 804, 1067, 1137, 1295
TscAI	CASTG	3 cut(s)	354, 677, 1132
TseFI	GTSAC	2 cut(s)	558, 674
TseI	GCWGC	2 cut(s)	122, 464
Tsp45I	GTSAC	2 cut(s)	558, 674
TspDTI	ATGAA	8 cut(s)	17, 102, 170, 374, 503, 855, 1047, 1086
TspRI	CASTG	3 cut(s)	354, 677, 1132
VpaK11BI	GGWCC	1 cut(s)	970
XapI	RAATTY	3 cut(s)	160, 476, 981
XmiI	GTMKAC	1 cut(s)	873
XspI	CTAG	2 cut(s)	563, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.