Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002015

Physical Location & Seq

Genomic Coordinates Reverse (-)

9524095 .. 9526835

Gene Structure 2741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0122000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGGCAAGAACAACTCATTTGGCTGTTCTTAAAGTTCTCATGGCTTTGATATTTGCTGCTTGGATTTCTCTTTGGATTCTCAAGCCAACTCAGCTTTGGACAAGAAAATGGAAAGCAGCTGAAGATTTAGCAAGGCCTACTTTGTTTGGATATTATGGTCTTAATTTTGCTGTGTATACATTCCCGCTTATTGCTCTGGCTACTGTAGGGTCTATCTACTTGAATTTGACGCCCAGAGAGCCAATTAGGAGAGAAGGGAGGAGAGTAATTGCTGGTTTCTCAAATCCATTGGTGGTGAACAGTCTTCTGGGAATTTTATCAAGTATTGAAATTGTTGCCGTCTTCCTCTTCATGCTCTTCTTAGCTTGGACGTTCTATGTCCGAATTGCAAATGATTTCAAGAAATTAAAGCCTGACAAAGCACTAAAACTGAATCTATGGCAACTCAAATACCTAAGGGTGGCAACTCGGTTCGGTTTGTTAGCAGAAGCCTGCCTGGCTTTTCTTCTTCTCCCTGTACTAAGAGGGTTATCCGTATTTCGGTTACTTGGCATTCAGTTTGAAGCTTCGGTAAGATATCATATCTGGCTTGGGACTACAATGCTATTTTGTGCTACTTTCCATGGTGTAAGCACCTTGTTCATTTGGGGTGTCAGCCACTATATTCAAGATGAGGTGTGGAAATGGCAGAATACCGGGCGAATATACCTTGCTGGGGAAATCAGTCTAGTTACCGGGTTAGTAATTTGGATCACAGCACTGCCTCAAATAAGGAGAAAAAAATTTGAGATATTTTACTACACACACCATCTATACATGGTTTTCCTAGTGTTGTTCTTGTTTCATGCCGGAGACCGGCACTTCTATACCGTCTTCCCTGGAATTTTTCTGTTTGGACTAGACAAGCTACTTAGGATCATACAATCTAGACCACAAACGTGCATTCTATCAGCAAGAGTCTTCCCTTCTAAAGCTATAGAGCTTATACTACCAAAAGATCCAGGACTCAAGTATACCCCAACAAGTGTCCTATTTCTGAAGGTACCAAGTATATCTAAATATCAGTGGCACTCATTCAGCATTATTTCCAGTTCTAGTGTTGATGCCAACTCAATGTCTATCCTGATTAAATCCGAAGGATCCTGGACAAGTTCTCTCTCGAATTTGATACAAACTGAGCAGAAGTCAGATGCTGATCATATGAAATGCATACCTGTTGCAGTAGAAGGTCCTTACGGACCTGCCACAATGGAATTCCTAAGGTATGACAGTCTACTTCTTGTTGCTGGAGGAATTGGTATAACCCCATTTCTGAGCATCTTACAGGAACTTGTTGCAGCCCAAAACAGCGGCCGATACAAATTCCTACCTAGGATGCAACTTATATTTGCTGTCAAGAAGGCCCAAGATATATGTCTACTGAACTCAATTTCACCTCTAATTTTCAACCAGCCAGCTGAAAAGTGCCATCTGAAAGTGAAGGTATATGTGACTCAAGAAGAGCAGTCTGGTGTCACAGTAAGAGAAGTACTACTAAATGAGTCTTCTCGAGTGCAGACAATAAACTTTGGCATCAAATCTTCAGTTTATCCTGTAACTGGACTTGAAAGTCCACTCTGGTTGGCTGCCATAGCTGGAATTTCCTTTATCCTGTTTCTCATCTTCCTCATCATTTTCAACCACATTTTCATTCCCTCCCAGAAAAATGCTACCAAAGAAAAGACTCCATCTTCGGTTGCAGATCTGCTTATCATATGTTCTTTCATCACAGTGTTAATGTGCATCTTCTTTGTAGCATTTATTATAAAACGGAGAAGACTAAAGCAACAGAGCCCTCCAGTTTTCCAAAAACAAGGCAAAGCATTGGAAATAAGTCCAACAGAAGCAAGGGATGCTCTTGAGGAACATGAAATCCATTTTGGAGGAAGGCCTAATTTTGAAGATATCTTTGCAAAATTTCCAAATGAGACTGGTGGATCTGATGTTGGTGTCCTGGTCTGTGGACCTGAAGCTATAAAAGAATCAGTGGCATCAATATGCCAGCACAAGTGTGGAGGTTTAAAAGTGGGTGCTAATAACAAGCAGAAAGCCAATTTCAGTTTTCACTCTCTCAATTTTGCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

708

Amino Acids

79.8

Weight (kDa)

9.55

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferric_reduct	PF01794	158 - 279	9.5e-21	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	316 - 415	8.6e-19	FAD-binding domain
NAD_binding_6	PF08030	422 - 681	6.8e-20	Ferric reductase NAD binding domain
NAD_binding_1	PF00175	427 - 515	4.7e-06	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51270 AT3G51270 AT3G51270 AT3G51270
fragaria_vesca	FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_7g06440 FvH4_7g06440
malus_domestica	MD01G1035500.v1.1 MD02G1001000.v1.1 MD15G1320300.v1.1
prunus_persica	Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1
pyrus_communis	pycom01g06260 pycom15g28140
rosa_chinensis	RchiOBHm_Chr1g0334711 RchiOBHm_Chr7g0210541
rosa_laevigata	RLG00000026279 RLG00000029431
rosa_multiflora	Rmu_sc0002295.1_g000002 Rmu_sc0006031.1_g000024
rosa_roxburghii	Rroxscaffold_3G00236050 Rroxscaffold_4G00279110 Rroxscaffold_4G00316660
rosa_rugosa	Rorug01G0115100 Rorug01G0115200 Rorug07G0122000 Rorug07G0122100 Rorug07G0122100 Rorug07G0122200 Rorug07G0122200
rosa_samantha	Rh1AG140300 Rh1BG107400 Rh1CG132200 Rh1DG144300 Rh7AG254300 Rh7BG249600 Rh7CG271200 Rh7DG262000
rosa_wichuraiana	Rw1G011570 Rw7G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1805
AasI	GACNNNNNNGTC	1 cut(s)	1608
Acc36I	ACCTGC	1 cut(s)	1249
Acc65I	GGTACC	1 cut(s)	1042
AccB1I	GGYRCC	1 cut(s)	1042
AccI	GTMKAC	4 cut(s)	176, 1013, 1273, 1417
AciI	CCGC	2 cut(s)	185, 1350
AclWI	GGATC	6 cut(s)	758, 923, 992, 1134, 1147, 1984
AcoI	YGGCCR	1 cut(s)	1351
AcsI	RAATTY	9 cut(s)	223, 312, 782, 882, 1162, 1253, 1361, 1638, 1955
AcuI	CTGAAG	4 cut(s)	141, 1058, 1566, 2028
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	3 cut(s)	519, 1044, 1530
AfiI	CCNNNNNNNGG	5 cut(s)	460, 540, 715, 855, 1598
AgsI	TTSAA	9 cut(s)	223, 329, 400, 563, 668, 1447, 1607, 1678, 1940
AjnI	CCWGG	5 cut(s)	495, 877, 1000, 1142, 1992
AjuI	GAANNNNNNNTTGG	2 cut(s)	1902, 1934
AleI	CACNNNNGTG	2 cut(s)	937, 2049
AloI	GAACNNNNNNTCC	2 cut(s)	1896, 1928
Alw26I	GTCTC	2 cut(s)	846, 1961
AlwI	GGATC	6 cut(s)	758, 923, 992, 1134, 1147, 1984
AlwNI	CAGNNNCTG	1 cut(s)	1193
Ama87I	CYCGRG	1 cut(s)	1548
AoxI	GGCC	4 cut(s)	134, 1351, 1401, 1928
ApeKI	GCWGC	4 cut(s)	56, 116, 1337, 1625
ApoI	RAATTY	9 cut(s)	223, 312, 782, 882, 1162, 1253, 1361, 1638, 1955
ArsI	GACNNNNNNTTYG	2 cut(s)	1714, 1746
Asp718I	GGTACC	1 cut(s)	1042
AspA2I	CCTAGG	1 cut(s)	1370
AspS9I	GGNCC	4 cut(s)	1229, 1238, 1402, 2003
AsuC2I	CCSGG	2 cut(s)	697, 736
AsuHPI	GGTGA	2 cut(s)	307, 1425
AvaI	CYCGRG	1 cut(s)	1548
AvaII	GGWCC	3 cut(s)	1229, 1238, 2003
AvrII	CCTAGG	1 cut(s)	1370
AxyI	CCTNAGG	2 cut(s)	455, 1259
BamHI	GGATCC	1 cut(s)	1139
BanI	GGYRCC	1 cut(s)	1042
BanII	GRGCYC	1 cut(s)	1835
BbsI	GAAGAC	6 cut(s)	296, 334, 865, 952, 1536, 1822
BbvI	GCAGC	4 cut(s)	43, 128, 1349, 1612
BccI	CCATC	3 cut(s)	816, 1476, 1735
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	5 cut(s)	497, 879, 1002, 1144, 1994
BclI	TGATCA	1 cut(s)	1195
BcnI	CCSGG	2 cut(s)	697, 736
BcoDI	GTCTC	2 cut(s)	846, 1961
BfaI	CTAG	6 cut(s)	728, 827, 899, 927, 1095, 1371
BfmI	CTRYAG	2 cut(s)	204, 975
BfuAI	ACCTGC	1 cut(s)	1249
BglI	GCCNNNNNGGC	1 cut(s)	497
BglII	AGATCT	1 cut(s)	1741
BisI	GCNGC	5 cut(s)	57, 117, 1338, 1351, 1626
BlnI	CCTAGG	1 cut(s)	1370
BlsI	GCNGC	5 cut(s)	58, 118, 1339, 1352, 1627
BmcAI	AGTACT	1 cut(s)	1530
Bme1390I	CCNGG	7 cut(s)	497, 697, 736, 879, 1002, 1144, 1994
Bme18I	GGWCC	3 cut(s)	1229, 1238, 2003
BmeT110I	CYCGRG	1 cut(s)	1548
BmgT120I	GGNCC	4 cut(s)	1229, 1238, 1402, 2003
BmiI	GGNNCC	2 cut(s)	1044, 1141
BmrFI	CCNGG	7 cut(s)	497, 697, 736, 879, 1002, 1144, 1994
BmsI	GCATC	8 cut(s)	1093, 1180, 1326, 1365, 1581, 1791, 1882, 2039
BpiI	GAAGAC	6 cut(s)	296, 334, 865, 952, 1536, 1822
BpmI	CTGGAG	2 cut(s)	1308, 1821
BpuEI	CTTGAG	4 cut(s)	65, 992, 1479, 1919
BpuMI	CCSGG	2 cut(s)	697, 736
BsaBI	GATNNNNATC	1 cut(s)	1194
BsaHI	GRCGYC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	846
BsaJI	CCNNGG	3 cut(s)	622, 877, 1370
Bsc4I	CCNNNNNNNGG	5 cut(s)	460, 540, 715, 855, 1598
Bse118I	RCCGGY	1 cut(s)	855
Bse1I	ACTGG	4 cut(s)	1089, 1603, 1838, 1975
Bse21I	CCTNAGG	2 cut(s)	455, 1259
Bse8I	GATNNNNATC	1 cut(s)	1194
BseBI	CCWGG	5 cut(s)	497, 879, 1002, 1144, 1994
BseDI	CCNNGG	3 cut(s)	622, 877, 1370
BseGI	GGATG	2 cut(s)	1380, 1897
BseJI	GATNNNNATC	1 cut(s)	1194
BseLI	CCNNNNNNNGG	5 cut(s)	460, 540, 715, 855, 1598
BseMII	CTCAG	3 cut(s)	104, 1167, 1304
BseNI	ACTGG	4 cut(s)	1089, 1603, 1838, 1975
BseRI	GAGGAG	1 cut(s)	274
BseX3I	CGGCCG	1 cut(s)	1351
BseXI	GCAGC	4 cut(s)	43, 128, 1349, 1612
BseYI	CCCAGC	1 cut(s)	713
BsgI	GTGCAG	1 cut(s)	1574
Bsh1285I	CGRYCG	1 cut(s)	1354
BshFI	GGCC	4 cut(s)	136, 1353, 1403, 1930
BshNI	GGYRCC	1 cut(s)	1042
BsiEI	CGRYCG	1 cut(s)	1354
BsiHKCI	CYCGRG	1 cut(s)	1548
BsiSI	CCGG	4 cut(s)	696, 735, 849, 856
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	5 cut(s)	460, 540, 715, 855, 1598
BsmAI	GTCTC	2 cut(s)	846, 1961
BsmFI	GGGAC	1 cut(s)	607
BsmI	GAATGC	2 cut(s)	552, 942
BsnI	GGCC	4 cut(s)	136, 1353, 1403, 1930
Bso31I	GGTCTC	1 cut(s)	846
BsoBI	CYCGRG	1 cut(s)	1548
Bsp1286I	GDGCHC	1 cut(s)	1835
Bsp143I	GATC	7 cut(s)	750, 915, 997, 1139, 1195, 1741, 1976
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	2 cut(s)	185, 1350
BspANI	GGCC	4 cut(s)	136, 1353, 1403, 1930
BspCNI	CTCAG	3 cut(s)	103, 1168, 1305
BspLI	GGNNCC	2 cut(s)	1044, 1141
BspMI	ACCTGC	1 cut(s)	1249
BspPI	GGATC	6 cut(s)	758, 923, 992, 1134, 1147, 1984
BspQI	GCTCTTC	2 cut(s)	362, 1494
BspT107I	GGYRCC	1 cut(s)	1042
BspTNI	GGTCTC	1 cut(s)	846
BsrFI	RCCGGY	1 cut(s)	855
BsrI	ACTGG	4 cut(s)	1089, 1603, 1838, 1975
BssAI	RCCGGY	1 cut(s)	855
BssECI	CCNNGG	3 cut(s)	622, 877, 1370
BssMI	GATC	7 cut(s)	750, 915, 997, 1139, 1195, 1741, 1976
BssNAI	GTATAC	2 cut(s)	177, 1014
BssNI	GRCGYC	1 cut(s)	230
BssT1I	CCWWGG	2 cut(s)	622, 1370
Bst1107I	GTATAC	2 cut(s)	177, 1014
Bst2UI	CCWGG	5 cut(s)	497, 879, 1002, 1144, 1994
Bst4CI	ACNGT	6 cut(s)	205, 302, 871, 1271, 1519, 1771
Bst6I	CTCTTC	3 cut(s)	353, 362, 1494
BstACI	GRCGYC	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	1892
BstC8I	GCNNGC	3 cut(s)	493, 1455, 2042
BstDEI	CTNAG	8 cut(s)	90, 361, 455, 521, 911, 1176, 1259, 1313
BstDSI	CCRYGG	1 cut(s)	622
BstF5I	GGATG	2 cut(s)	1380, 1897
BstKTI	GATC	7 cut(s)	753, 918, 1000, 1142, 1198, 1744, 1979
BstMAI	GTCTC	2 cut(s)	846, 1961
BstMBI	GATC	7 cut(s)	750, 915, 997, 1139, 1195, 1741, 1976
BstMCI	CGRYCG	1 cut(s)	1354
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 238, 497, 1631, 1892
BstNI	CCWGG	5 cut(s)	497, 879, 1002, 1144, 1994
BstSCI	CCNGG	7 cut(s)	495, 695, 734, 877, 1000, 1142, 1992
BstSFI	CTRYAG	2 cut(s)	204, 975
BstV1I	GCAGC	4 cut(s)	43, 128, 1349, 1612
BstV2I	GAAGAC	6 cut(s)	296, 334, 865, 952, 1536, 1822
BstX2I	RGATCY	4 cut(s)	997, 1139, 1741, 1976
BstYI	RGATCY	4 cut(s)	997, 1139, 1741, 1976
BstZ17I	GTATAC	2 cut(s)	177, 1014
BstZI	CGGCCG	1 cut(s)	1351
Bsu36I	CCTNAGG	2 cut(s)	455, 1259
BsuRI	GGCC	4 cut(s)	136, 1353, 1403, 1930
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	2 cut(s)	1380, 1897
BtsI	GCAGTG	1 cut(s)	758
BtsIMutI	CAGTG	4 cut(s)	758, 1070, 1776, 2031
BveI	ACCTGC	1 cut(s)	1249
Cac8I	GCNNGC	3 cut(s)	493, 1455, 2042
CaiI	CAGNNNCTG	1 cut(s)	1193
Cfr10I	RCCGGY	1 cut(s)	855
Cfr13I	GGNCC	4 cut(s)	1229, 1238, 1402, 2003
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	3 cut(s)	518, 1043, 1529
CspCI	CAANNNNNGTGG	2 cut(s)	1602, 1637
CviAII	CATG	6 cut(s)	40, 352, 623, 817, 845, 1907
CviQI	GTAC	3 cut(s)	518, 1043, 1529
DdeI	CTNAG	8 cut(s)	90, 361, 455, 521, 911, 1176, 1259, 1313
DpnI	GATC	7 cut(s)	752, 917, 999, 1141, 1197, 1743, 1978
DpnII	GATC	7 cut(s)	750, 915, 997, 1139, 1195, 1741, 1976
DraI	TTTAAA	1 cut(s)	2061
DrdI	GACNNNNNNGTC	1 cut(s)	1608
DseDI	GACNNNNNNGTC	1 cut(s)	1608
EaeI	YGGCCR	1 cut(s)	1351
EagI	CGGCCG	1 cut(s)	1351
Eam1104I	CTCTTC	3 cut(s)	353, 362, 1494
EarI	CTCTTC	3 cut(s)	353, 362, 1494
EclXI	CGGCCG	1 cut(s)	1351
Eco130I	CCWWGG	2 cut(s)	622, 1370
Eco147I	AGGCCT	2 cut(s)	136, 1930
Eco24I	GRGCYC	1 cut(s)	1835
Eco31I	GGTCTC	1 cut(s)	846
Eco32I	GATATC	2 cut(s)	578, 1945
Eco47I	GGWCC	3 cut(s)	1229, 1238, 2003
Eco52I	CGGCCG	1 cut(s)	1351
Eco57I	CTGAAG	4 cut(s)	141, 1058, 1566, 2028
Eco81I	CCTNAGG	2 cut(s)	455, 1259
Eco88I	CYCGRG	1 cut(s)	1548
EcoO109I	RGGNCCY	1 cut(s)	1229
EcoRI	GAATTC	1 cut(s)	1253
EcoRII	CCWGG	5 cut(s)	495, 877, 1000, 1142, 1992
EcoRV	GATATC	2 cut(s)	578, 1945
EcoT14I	CCWWGG	2 cut(s)	622, 1370
EcoT22I	ATGCAT	1 cut(s)	1211
EcoT38I	GRGCYC	1 cut(s)	1835
ErhI	CCWWGG	2 cut(s)	622, 1370
FaeI	CATG	6 cut(s)	43, 355, 626, 820, 848, 1910
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	6 cut(s)	39, 351, 622, 816, 844, 1906
FauI	CCCGC	1 cut(s)	192
FauNDI	CATATG	2 cut(s)	1200, 1754
FbaI	TGATCA	1 cut(s)	1195
FblI	GTMKAC	4 cut(s)	176, 1013, 1273, 1417
Fnu4HI	GCNGC	5 cut(s)	57, 117, 1338, 1351, 1626
FokI	GGATG	2 cut(s)	1387, 1904
FriOI	GRGCYC	1 cut(s)	1835
Fsp4HI	GCNGC	5 cut(s)	57, 117, 1338, 1351, 1626
FspBI	CTAG	6 cut(s)	728, 827, 899, 927, 1095, 1371
GluI	GCNGC	5 cut(s)	57, 117, 1338, 1351, 1626
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	2 cut(s)	1308, 1821
HaeIII	GGCC	4 cut(s)	136, 1353, 1403, 1930
HapII	CCGG	4 cut(s)	696, 735, 849, 856
HgaI	GACGC	1 cut(s)	238
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	6 cut(s)	43, 355, 626, 820, 848, 1910
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	8 cut(s)	76, 433, 957, 1005, 1492, 1541, 1723, 2021
HpaII	CCGG	4 cut(s)	696, 735, 849, 856
HphI	GGTGA	2 cut(s)	307, 1425
Hpy166II	GTNNAC	7 cut(s)	177, 298, 1014, 1274, 1418, 1613, 2003
Hpy188I	TCNGA	7 cut(s)	383, 1038, 1135, 1189, 1314, 1473, 1981
Hpy188III	TCNNGA	9 cut(s)	400, 668, 927, 1123, 1159, 1396, 1496, 1548, 1898
Hpy8I	GTNNAC	7 cut(s)	177, 298, 1014, 1274, 1418, 1613, 2003
HpyAV	CCTTC	8 cut(s)	248, 975, 1033, 1130, 1220, 1393, 1474, 1920
HpyCH4III	ACNGT	6 cut(s)	205, 302, 871, 1271, 1519, 1771
HpyCH4IV	ACGT	2 cut(s)	371, 938
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 238, 497, 1631, 1892
HpyF3I	CTNAG	8 cut(s)	90, 361, 455, 521, 911, 1176, 1259, 1313
HpySE526I	ACGT	2 cut(s)	371, 938
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	6 cut(s)	43, 355, 626, 820, 848, 1910
KpnI	GGTACC	1 cut(s)	1046
Ksp22I	TGATCA	1 cut(s)	1195
Kzo9I	GATC	7 cut(s)	750, 915, 997, 1139, 1195, 1741, 1976
LguI	GCTCTTC	2 cut(s)	362, 1494
Lsp1109I	GCAGC	4 cut(s)	43, 128, 1349, 1612
LweI	GCATC	8 cut(s)	1093, 1180, 1326, 1365, 1581, 1791, 1882, 2039
MaeI	CTAG	6 cut(s)	728, 827, 899, 927, 1095, 1371
MaeII	ACGT	2 cut(s)	371, 938
MaeIII	GTNAC	5 cut(s)	543, 730, 1489, 1513, 1594
MalI	GATC	7 cut(s)	752, 917, 999, 1141, 1197, 1743, 1978
MboI	GATC	7 cut(s)	750, 915, 997, 1139, 1195, 1741, 1976
MflI	RGATCY	4 cut(s)	997, 1139, 1741, 1976
MhlI	GDGCHC	1 cut(s)	1835
MlyI	GAGTC	5 cut(s)	966, 999, 1486, 1550, 1717
MmeI	TCCRAC	1 cut(s)	1901
Mph1103I	ATGCAT	1 cut(s)	1211
MseI	TTAA	6 cut(s)	30, 162, 407, 1128, 1775, 2060
MslI	CAYNNNNRTG	4 cut(s)	937, 1769, 2035, 2049
MspA1I	CMGCKG	3 cut(s)	119, 1350, 1457
MspI	CCGG	4 cut(s)	696, 735, 849, 856
MspR9I	CCNGG	7 cut(s)	497, 697, 736, 879, 1002, 1144, 1994
Mva1269I	GAATGC	2 cut(s)	552, 942
MvaI	CCWGG	5 cut(s)	497, 879, 1002, 1144, 1994
MwoI	GCNNNNNNNGC	5 cut(s)	91, 238, 497, 1631, 1892
NciI	CCSGG	2 cut(s)	697, 736
NcoI	CCATGG	1 cut(s)	622
NdeI	CATATG	2 cut(s)	1200, 1754
NdeII	GATC	7 cut(s)	750, 915, 997, 1139, 1195, 1741, 1976
NlaIII	CATG	6 cut(s)	43, 355, 626, 820, 848, 1910
NlaIV	GGNNCC	2 cut(s)	1044, 1141
NmuCI	GTSAC	2 cut(s)	1489, 1513
NsiI	ATGCAT	1 cut(s)	1211
OliI	CACNNNNGTG	2 cut(s)	937, 2049
PaeR7I	CTCGAG	1 cut(s)	1548
PceI	AGGCCT	2 cut(s)	136, 1930
PciSI	GCTCTTC	2 cut(s)	362, 1494
PctI	GAATGC	2 cut(s)	552, 942
PfeI	GAWTC	3 cut(s)	76, 433, 2021
PfoI	TCCNGGA	2 cut(s)	1000, 1142
PkrI	GCNGC	5 cut(s)	58, 118, 1339, 1352, 1627
PleI	GAGTC	5 cut(s)	965, 999, 1486, 1549, 1717
PpsI	GAGTC	5 cut(s)	965, 999, 1486, 1549, 1717
PpuMI	RGGWCCY	1 cut(s)	1229
PsiI	TTATAA	1 cut(s)	1805
Psp5II	RGGWCCY	1 cut(s)	1229
Psp6I	CCWGG	5 cut(s)	495, 877, 1000, 1142, 1992
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	5 cut(s)	495, 877, 1000, 1142, 1992
PspN4I	GGNNCC	2 cut(s)	1044, 1141
PspPI	GGNCC	4 cut(s)	1229, 1238, 1402, 2003
PspPPI	RGGWCCY	1 cut(s)	1229
PstNI	CAGNNNCTG	1 cut(s)	1193
PsuI	RGATCY	4 cut(s)	997, 1139, 1741, 1976
PvuII	CAGCTG	2 cut(s)	119, 1457
RsaI	GTAC	3 cut(s)	519, 1044, 1530
RsaNI	GTAC	3 cut(s)	518, 1043, 1529
RseI	CAYNNNNRTG	4 cut(s)	937, 1769, 2035, 2049
SapI	GCTCTTC	2 cut(s)	362, 1494
SaqAI	TTAA	6 cut(s)	30, 162, 407, 1128, 1775, 2060
SatI	GCNGC	5 cut(s)	57, 117, 1338, 1351, 1626
Sau3AI	GATC	7 cut(s)	750, 915, 997, 1139, 1195, 1741, 1976
Sau96I	GGNCC	4 cut(s)	1229, 1238, 1402, 2003
ScaI	AGTACT	1 cut(s)	1530
SchI	GAGTC	5 cut(s)	966, 999, 1486, 1550, 1717
ScrFI	CCNGG	7 cut(s)	497, 697, 736, 879, 1002, 1144, 1994
SduI	GDGCHC	1 cut(s)	1835
SfaNI	GCATC	8 cut(s)	1093, 1180, 1326, 1365, 1581, 1791, 1882, 2039
SfcI	CTRYAG	2 cut(s)	204, 975
Sfr274I	CTCGAG	1 cut(s)	1548
SinI	GGWCC	3 cut(s)	1229, 1238, 2003
SlaI	CTCGAG	1 cut(s)	1548
SmiMI	CAYNNNNRTG	4 cut(s)	937, 1769, 2035, 2049
SmlI	CTYRAG	5 cut(s)	80, 1007, 1494, 1548, 1898
SmoI	CTYRAG	5 cut(s)	80, 1007, 1494, 1548, 1898
SseBI	AGGCCT	2 cut(s)	136, 1930
SsiI	CCGC	2 cut(s)	185, 1350
SspMI	CTAG	6 cut(s)	728, 827, 899, 927, 1095, 1371
StuI	AGGCCT	2 cut(s)	136, 1930
StyD4I	CCNGG	7 cut(s)	495, 695, 734, 877, 1000, 1142, 1992
StyI	CCWWGG	2 cut(s)	622, 1370
TaaI	ACNGT	6 cut(s)	205, 302, 871, 1271, 1519, 1771
TaiI	ACGT	2 cut(s)	374, 941
TaqI	TCGA	2 cut(s)	1160, 1549
TatI	WGTACW	2 cut(s)	517, 1528
TauI	GCSGC	1 cut(s)	1353
TfiI	GAWTC	3 cut(s)	76, 433, 2021
Tru1I	TTAA	6 cut(s)	30, 162, 407, 1128, 1775, 2060
Tru9I	TTAA	6 cut(s)	30, 162, 407, 1128, 1775, 2060
TscAI	CASTG	4 cut(s)	765, 1070, 1776, 2031
TseFI	GTSAC	2 cut(s)	1489, 1513
TseI	GCWGC	4 cut(s)	56, 116, 1337, 1625
Tsp45I	GTSAC	2 cut(s)	1489, 1513
TspDTI	ATGAA	7 cut(s)	340, 631, 833, 1217, 1678, 1753, 1923
TspGWI	ACGGA	3 cut(s)	523, 1251, 1825
TspRI	CASTG	4 cut(s)	765, 1070, 1776, 2031
VpaK11BI	GGWCC	3 cut(s)	1229, 1238, 2003
XapI	RAATTY	9 cut(s)	223, 312, 782, 882, 1162, 1253, 1361, 1638, 1955
XbaI	TCTAGA	1 cut(s)	926
XcmI	CCANNNNNNNNNTGG	2 cut(s)	93, 2048
XhoI	CTCGAG	1 cut(s)	1548
XmaJI	CCTAGG	1 cut(s)	1370
XmiI	GTMKAC	4 cut(s)	176, 1013, 1273, 1417
XspI	CTAG	6 cut(s)	728, 827, 899, 927, 1095, 1371
ZrmI	AGTACT	1 cut(s)	1530
Zsp2I	ATGCAT	1 cut(s)	1211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.