Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002015

Physical Location & Seq

Genomic Coordinates Forward (+)

9532072 .. 9534082

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0122100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAAGGCGAGGATGGTTATGTTCCGGTGGAAGCTAAGGATTTTTATAAGGACTATAGTCCTCGAAAGACTTTCTCGCCTGAGATTGTGGAGCTCGGAGAGGATATCACGAGTACTAGTGATATCACTCCAGGCAGCACTAGCAGAGATATTGTAGGTGTCAATGATGTTTATGTGGCTGTTGGTAAAGATGACACTGATGTTCTGAAATGGGTGCTTGATAATGCTGTTTCGCCTGGTTCTCGGGTCTTTCTTGTCCATGTCTTCCCTCCAATCACCCACATCCCTACACCAGTTGGACGATTATCAATGAGCCAATTAAGTGAAGATCAAGTGAGATTTTACGTCAATGAAGAGAATAATAAGAGGAAGAACCTCTTGCAGAAATACGTCTGCTTATGCAACAATGCTAAGGTAACAGTGGACACAATGCTCCTGGAGAGCAGCGACAGAACAAAAGCAATCACTGATCTTATGTCCGTTCTTAGGATCACTCACCTTGTCATAGGAGCCAAAAGAGCACCTCATTCAAGGTTAAATTATGTTGTTCACGCGATCAGGAGGAAACAATTATCACTAGGAGAATTTGTTAGGAAAAGTGCACCTGGGTATTGTCAGGTTAGCATCATTCATAAAGGCAATAAGGTAATGGTTGATGAACAAAGGCCTCCCCATAGCGAAAGAAGCATCTTCGAGTGGGCATGCTTTCCAGTGCGTGGGAAAAATCCCAGGATGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

246

Amino Acids

27.73

Weight (kDa)

8.59

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51270 AT3G51270 AT3G51270 AT3G51270
fragaria_vesca	FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_7g06440 FvH4_7g06440
malus_domestica	MD01G1035500.v1.1 MD02G1001000.v1.1 MD15G1320300.v1.1
prunus_persica	Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1
pyrus_communis	pycom01g06260 pycom15g28140
rosa_chinensis	RchiOBHm_Chr1g0334711 RchiOBHm_Chr7g0210541
rosa_laevigata	RLG00000026279 RLG00000029431
rosa_multiflora	Rmu_sc0002295.1_g000002 Rmu_sc0006031.1_g000024
rosa_roxburghii	Rroxscaffold_3G00236050 Rroxscaffold_4G00279110 Rroxscaffold_4G00316660
rosa_rugosa	Rorug01G0115100 Rorug01G0115200 Rorug07G0122000 Rorug07G0122100 Rorug07G0122100 Rorug07G0122200 Rorug07G0122200
rosa_samantha	Rh1AG140300 Rh1BG107400 Rh1CG132200 Rh1DG144300 Rh7AG254300 Rh7BG249600 Rh7CG271200 Rh7DG262000
rosa_wichuraiana	Rw1G011570 Rw7G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	716
AccII	CGCG	1 cut(s)	554
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	584
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	486, 716
AgsI	TTSAA	1 cut(s)	531
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	5 cut(s)	130, 235, 435, 604, 728
AluBI	AGCT	2 cut(s)	35, 94
AluI	AGCT	2 cut(s)	35, 94
Alw21I	GWGCWC	3 cut(s)	96, 523, 604
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	1 cut(s)	665
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	2 cut(s)	135, 444
ApoI	RAATTY	1 cut(s)	584
AsuHPI	GGTGA	2 cut(s)	268, 488
AvaI	CYCGRG	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	3 cut(s)	96, 523, 604
BbvI	GCAGC	2 cut(s)	147, 456
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	5 cut(s)	132, 237, 437, 606, 730
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	117, 141, 578
BfmI	CTRYAG	1 cut(s)	55
BisI	GCNGC	2 cut(s)	136, 445
BlsI	GCNGC	2 cut(s)	137, 446
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	5 cut(s)	132, 237, 437, 606, 730
BmeT110I	CYCGRG	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	5 cut(s)	132, 237, 437, 606, 730
BmsI	GCATC	2 cut(s)	633, 696
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	2 cut(s)	114, 458
Bpu10I	CCTNAGC	2 cut(s)	36, 411
BsaJI	CCNNGG	2 cut(s)	605, 728
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 716
Bse1I	ACTGG	2 cut(s)	293, 710
BseBI	CCWGG	5 cut(s)	132, 237, 437, 606, 730
BseDI	CCNNGG	2 cut(s)	605, 728
BseGI	GGATG	3 cut(s)	19, 282, 738
BseLI	CCNNNNNNNGG	2 cut(s)	486, 716
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	293, 710
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	2 cut(s)	147, 456
Bsh1236I	CGCG	1 cut(s)	554
BshFI	GGCC	1 cut(s)	667
BsiHKAI	GWGCWC	3 cut(s)	96, 523, 604
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	486, 716
BsnI	GGCC	1 cut(s)	667
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	3 cut(s)	96, 523, 604
Bsp143I	GATC	4 cut(s)	328, 469, 489, 555
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	554
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	293, 710
BssECI	CCNNGG	2 cut(s)	605, 728
BssMI	GATC	4 cut(s)	328, 469, 489, 555
BssSI	CACGAG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	109
Bst2UI	CCWGG	5 cut(s)	132, 237, 437, 606, 730
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	703
BstDEI	CTNAG	4 cut(s)	36, 81, 411, 485
BstF5I	GGATG	3 cut(s)	19, 282, 738
BstFNI	CGCG	1 cut(s)	554
BstKTI	GATC	4 cut(s)	331, 472, 492, 558
BstMBI	GATC	4 cut(s)	328, 469, 489, 555
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 518, 684
BstNI	CCWGG	5 cut(s)	132, 237, 437, 606, 730
BstNSI	RCATGY	1 cut(s)	705
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSCI	CCNGG	5 cut(s)	130, 235, 435, 604, 728
BstSFI	CTRYAG	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	604
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	147, 456
BstV2I	GAAGAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	667
BtsCI	GGATG	3 cut(s)	19, 282, 738
BtsIMutI	CAGTG	4 cut(s)	195, 426, 465, 717
Cac8I	GCNNGC	1 cut(s)	703
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	260, 702
CviJI	RGCY	6 cut(s)	35, 94, 179, 315, 512, 667
CviKI_1	RGCY	6 cut(s)	35, 94, 179, 315, 512, 667
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	4 cut(s)	36, 81, 411, 485
DpnI	GATC	4 cut(s)	330, 471, 491, 557
DpnII	GATC	4 cut(s)	328, 469, 489, 555
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	96
Eco32I	GATATC	2 cut(s)	106, 124
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	5 cut(s)	130, 235, 435, 604, 728
EcoRV	GATATC	2 cut(s)	106, 124
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	2 cut(s)	263, 705
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	2 cut(s)	259, 701
Fnu4HI	GCNGC	2 cut(s)	136, 445
FokI	GGATG	2 cut(s)	26, 269
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	136, 445
FspBI	CTAG	3 cut(s)	117, 141, 578
GluI	GCNGC	2 cut(s)	136, 445
GsuI	CTGGAG	2 cut(s)	114, 458
HaeIII	GGCC	1 cut(s)	667
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	2 cut(s)	263, 705
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	268, 488
Hpy166II	GTNNAC	3 cut(s)	424, 550, 602
Hpy188I	TCNGA	2 cut(s)	98, 207
Hpy188III	TCNNGA	2 cut(s)	109, 559
Hpy8I	GTNNAC	3 cut(s)	424, 550, 602
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	2 cut(s)	345, 390
HpyCH4V	TGCA	3 cut(s)	382, 402, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 518, 684
HpyF3I	CTNAG	4 cut(s)	36, 81, 411, 485
HpySE526I	ACGT	2 cut(s)	345, 390
Hsp92II	CATG	2 cut(s)	263, 705
Kzo9I	GATC	4 cut(s)	328, 469, 489, 555
LmnI	GCTCC	3 cut(s)	91, 438, 509
Lsp1109I	GCAGC	2 cut(s)	147, 456
LweI	GCATC	2 cut(s)	633, 696
MaeI	CTAG	3 cut(s)	117, 141, 578
MaeII	ACGT	2 cut(s)	345, 390
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	4 cut(s)	330, 471, 491, 557
MboI	GATC	4 cut(s)	328, 469, 489, 555
MboII	GAAGA	5 cut(s)	256, 338, 365, 382, 682
MhlI	GDGCHC	3 cut(s)	96, 523, 604
MluCI	AATT	4 cut(s)	317, 538, 569, 584
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	9 cut(s)	4, 72, 94, 279, 360, 386, 534, 555, 678
MseI	TTAA	3 cut(s)	320, 536, 739
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	5 cut(s)	132, 237, 437, 606, 730
MvaI	CCWGG	5 cut(s)	132, 237, 437, 606, 730
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	3 cut(s)	141, 518, 684
NdeII	GATC	4 cut(s)	328, 469, 489, 555
NlaIII	CATG	2 cut(s)	263, 705
NlaIV	GGNNCC	1 cut(s)	511
NspI	RCATGY	1 cut(s)	705
PaeI	GCATGC	1 cut(s)	705
PceI	AGGCCT	1 cut(s)	667
PflMI	CCANNNNNTGG	1 cut(s)	716
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	137, 446
PshAI	GACNNNNGTC	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	5 cut(s)	130, 235, 435, 604, 728
PspGI	CCWGG	5 cut(s)	130, 235, 435, 604, 728
PspN4I	GGNNCC	1 cut(s)	511
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	320, 536, 739
SatI	GCNGC	2 cut(s)	136, 445
Sau3AI	GATC	4 cut(s)	328, 469, 489, 555
ScaI	AGTACT	1 cut(s)	115
ScrFI	CCNGG	5 cut(s)	132, 237, 437, 606, 730
SduI	GDGCHC	3 cut(s)	96, 523, 604
SfaNI	GCATC	2 cut(s)	633, 696
SfcI	CTRYAG	1 cut(s)	55
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	705
Sse9I	AATT	4 cut(s)	317, 538, 569, 584
SseBI	AGGCCT	1 cut(s)	667
SspMI	CTAG	3 cut(s)	117, 141, 578
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	667
StyD4I	CCNGG	5 cut(s)	130, 235, 435, 604, 728
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	2 cut(s)	348, 393
TaqI	TCGA	2 cut(s)	64, 693
TasI	AATT	4 cut(s)	317, 538, 569, 584
TatI	WGTACW	1 cut(s)	113
Tru1I	TTAA	3 cut(s)	320, 536, 739
Tru9I	TTAA	3 cut(s)	320, 536, 739
TscAI	CASTG	4 cut(s)	202, 426, 472, 717
TseI	GCWGC	2 cut(s)	135, 444
TspDTI	ATGAA	3 cut(s)	366, 620, 672
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	4 cut(s)	202, 426, 472, 717
Van91I	CCANNNNNTGG	1 cut(s)	716
VneI	GTGCAC	1 cut(s)	600
XapI	RAATTY	1 cut(s)	584
XceI	RCATGY	1 cut(s)	705
XspI	CTAG	3 cut(s)	117, 141, 578
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.