Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002015

Physical Location & Seq

Genomic Coordinates Forward (+)

9534975 .. 9539198

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0122200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGTACGCCTACGACAACCGATACGCCGACGCAGGCTCCTACCGCGAGCGCCGAAGTGACCTAATGGGTCCAGCGCCTGCGGCGGCAGCGCCACCGATCTACGGCCGTGGCGGTGGGGTAGCCCCGTACAGGGGCTCAGCGCCTCCGGTGTCTCCTTATGGAGGAGGAGGGGCTGGACCGGTAGGAGCTCCGGGAGATAGGAATGGATACCCTCCTTTCCAGCCCCCGGCGGGTCGGTTCAGTATGGGCCGAGACGGCGGTGGTAGTTTTGGCGGGAGAGGCCGTGGCGGCGGCGGTAGGGGTTTTGATGGTGCCCGTGGGGGTGGTAGAAGCTCCGGTTATAGTCGGGGTGGTGGAAGTTCGGGTTACGGGGGCGGGCGTGGAGGCGGTGGTAGACACGGTGGTGGGTCATCAAGAGGTGACTTGGATGGCATTGTTCTCCCCAAGCAGGATTTTGGGAGCTTAGTTCCTTTTGAGAAGAATTTCTACATTGAGAGCCCTTCGGTGAAGGCAATGTCAGAGCATGAAGTTTTGGCCTATAGAGCTAGGAGGGAGATTACGGTTGATGGGCATGATGTCCCGAAGCCAATTCAGACGTTTCGGGATGCAAGTTTCCCTGGTTACTGTCTCGACGTGATTGCCAAGTTGGGTTTTGTTGAACCAACACCAATTCAGGCTCAAGGATGGCCAATGGCACTAAAGGGTAGAGATTTAGTTGGAATTGCTGAGACTGGTTCCGGGAAAACCCTTTCTTATCTGCTGCCAGCTCTGGTACATATTAGTGCTCAGCCTCGATTAGCTCAAGGTGATGGTCCTATTGCGTTAGTATTAGCACCTACTCGAGAATTGGCAGTTCAAATTCAAGAAGAAGCTGTAAAATTTTGTTCACAAAATTATATTAGGAGTACTTGCATTTATGGTGGTGCTCCAAAAGGATCCCAAATACGCGATCTTAGAAGAGGGGTTGAGATTGTGATAGCTACACCTGGCAGACTAATAGATATGTTGGAAGCTCAGCACACAAGTTTGCGAAGAGTGACTTACCTAGTTTTGGATGAGGCTGATAGGATGTTGGACATGGGATTTGAGCCGCAGATAAGGAAAATTGTATCTCAAACCCGACCAGATCGGCAGACATTGTATTGGAGTGCCACATGGCCAAGGGAGGTCGAATCCTTAGCAAGGCAGTTTTTACGTAACCCCTATAAGGTAATTATTGGATCAGCAAGTTTGAAAGCAAACCAATCCATAAAGCAAGTTGTTGAAGTTGTGTCTGAGTTCGACAAATATAATAGGCTGCTCAAATTGCTAAAAGACTCGATCGTTGGGAGCCGAATTCTGATATTTGTGGAGACGAAAAAGGGTTGTGACCATGTCACTAAGCAATTAAGGATGGATGGATGGCCAGCTCTGTCCATTCATGGTGATAAAAACCAGGCTGAAAGAGATTGGGTCTTGGCTGAGTTTAAAAGTGGCAGATCTCCTATAATGACTGCCACTGATGTGGCTGCACGGGGTCTTGGTAGGATTACTTTATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

513

Amino Acids

55.13

Weight (kDa)

9.61

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	222 - 392	5.1e-49	DEAD/DEAH box helicase
Helicase_C	PF00271	429 - 507	2.6e-14	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51270 AT3G51270 AT3G51270 AT3G51270
fragaria_vesca	FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_7g06440 FvH4_7g06440
malus_domestica	MD01G1035500.v1.1 MD02G1001000.v1.1 MD15G1320300.v1.1
prunus_persica	Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1
pyrus_communis	pycom01g06260 pycom15g28140
rosa_chinensis	RchiOBHm_Chr1g0334711 RchiOBHm_Chr7g0210541
rosa_laevigata	RLG00000026279 RLG00000029431
rosa_multiflora	Rmu_sc0002295.1_g000002 Rmu_sc0006031.1_g000024
rosa_roxburghii	Rroxscaffold_3G00236050 Rroxscaffold_4G00279110 Rroxscaffold_4G00316660
rosa_rugosa	Rorug01G0115100 Rorug01G0115200 Rorug07G0122000 Rorug07G0122100 Rorug07G0122100 Rorug07G0122200 Rorug07G0122200
rosa_samantha	Rh1AG140300 Rh1BG107400 Rh1CG132200 Rh1DG144300 Rh7AG254300 Rh7BG249600 Rh7CG271200 Rh7DG262000
rosa_wichuraiana	Rw1G011570 Rw7G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	394
AccII	CGCG	2 cut(s)	45, 948
AclWI	GGATC	3 cut(s)	930, 943, 1228
AcoI	YGGCCR	4 cut(s)	103, 686, 1157, 1403
AcsI	RAATTY	4 cut(s)	481, 858, 878, 1335
AfaI	GTAC	4 cut(s)	5, 128, 774, 907
AgeI	ACCGGT	1 cut(s)	178
AgsI	TTSAA	5 cut(s)	659, 857, 863, 1234, 1265
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	3 cut(s)	616, 985, 1434
AleI	CACNNNNGTG	2 cut(s)	402, 1502
Alw21I	GWGCWC	3 cut(s)	190, 787, 928
Alw26I	GTCTC	5 cut(s)	156, 246, 632, 722, 1346
AlwI	GGATC	3 cut(s)	930, 943, 1228
AlwNI	CAGNNNCTG	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	840
AoxI	GGCC	7 cut(s)	103, 247, 280, 534, 686, 1157, 1403
ApeKI	GCWGC	4 cut(s)	86, 760, 1297, 1508
ApoI	RAATTY	4 cut(s)	481, 858, 878, 1335
ArsI	GACNNNNNNTTYG	2 cut(s)	1067, 1099
AsiGI	ACCGGT	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	4 cut(s)	51, 76, 91, 142
AspS9I	GGNCC	4 cut(s)	68, 176, 247, 812
AsuC2I	CCSGG	3 cut(s)	192, 227, 739
AsuHPI	GGTGA	4 cut(s)	431, 517, 818, 1436
AvaI	CYCGRG	1 cut(s)	840
AvaII	GGWCC	3 cut(s)	68, 176, 812
BaeGI	GKGCMC	1 cut(s)	316
BalI	TGGCCA	3 cut(s)	688, 1159, 1405
BamHI	GGATCC	1 cut(s)	935
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	3 cut(s)	137, 190, 500
BarI	GAAGNNNNNNTAC	2 cut(s)	470, 502
Bbv12I	GWGCWC	3 cut(s)	190, 787, 928
BbvI	GCAGC	4 cut(s)	98, 747, 1284, 1495
BccI	CCATC	8 cut(s)	302, 422, 560, 678, 803, 1387, 1391, 1395
BceAI	ACGGC	4 cut(s)	90, 118, 267, 271
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	3 cut(s)	618, 987, 1436
BciVI	GTATCC	1 cut(s)	200
BcnI	CCSGG	3 cut(s)	192, 227, 739
BcoDI	GTCTC	5 cut(s)	156, 246, 632, 722, 1346
BfaI	CTAG	3 cut(s)	546, 1046, 1540
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	4 cut(s)	52, 77, 92, 143
BfuI	GTATCC	1 cut(s)	200
BglI	GCCNNNNNGGC	2 cut(s)	255, 288
BglII	AGATCT	1 cut(s)	1478
BisI	GCNGC	9 cut(s)	81, 84, 87, 289, 292, 761, 1091, 1298, 1509
BlpI	GCTNAGC	3 cut(s)	136, 786, 1014
BlsI	GCNGC	9 cut(s)	82, 85, 88, 290, 293, 762, 1092, 1299, 1510
BmcAI	AGTACT	1 cut(s)	907
Bme1390I	CCNGG	6 cut(s)	192, 227, 618, 739, 987, 1436
Bme18I	GGWCC	3 cut(s)	68, 176, 812
BmeT110I	CYCGRG	1 cut(s)	840
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	4 cut(s)	68, 176, 247, 812
BmiI	GGNNCC	6 cut(s)	37, 69, 313, 736, 937, 1331
BmrFI	CCNGG	6 cut(s)	192, 227, 618, 739, 987, 1436
BmsI	GCATC	1 cut(s)	595
Bpu10I	CCTNAGC	1 cut(s)	1177
Bpu1102I	GCTNAGC	3 cut(s)	136, 786, 1014
BpuEI	CTTGAG	2 cut(s)	663, 786
BpuMI	CCSGG	3 cut(s)	192, 227, 739
BsaAI	YACGTR	1 cut(s)	1196
BsaJI	CCNNGG	6 cut(s)	106, 225, 283, 316, 616, 1160
BsaWI	WCCGGW	3 cut(s)	145, 178, 335
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 268, 298
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	3 cut(s)	618, 987, 1436
BseDI	CCNNGG	6 cut(s)	106, 225, 283, 316, 616, 1160
BseGI	GGATG	8 cut(s)	433, 610, 689, 1060, 1074, 1398, 1402, 1406
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	6 cut(s)	150, 717, 800, 1028, 1266, 1452
BseNI	ACTGG	1 cut(s)	736
BseRI	GAGGAG	2 cut(s)	177, 180
BseSI	GKGCMC	1 cut(s)	316
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	4 cut(s)	98, 747, 1284, 1495
BsgI	GTGCAG	1 cut(s)	1494
Bsh1236I	CGCG	2 cut(s)	45, 948
Bsh1285I	CGRYCG	2 cut(s)	106, 1323
BshFI	GGCC	7 cut(s)	105, 249, 282, 536, 688, 1159, 1405
BshNI	GGYRCC	1 cut(s)	311
BshTI	ACCGGT	1 cut(s)	178
BsiEI	CGRYCG	2 cut(s)	106, 1323
BsiHKAI	GWGCWC	3 cut(s)	190, 787, 928
BsiHKCI	CYCGRG	1 cut(s)	840
BsiSI	CCGG	6 cut(s)	146, 179, 191, 227, 336, 738
BslFI	GGGAC	1 cut(s)	563
BsmAI	GTCTC	5 cut(s)	156, 246, 632, 722, 1346
BsmBI	CGTCTC	2 cut(s)	246, 1346
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	7 cut(s)	105, 249, 282, 536, 688, 1159, 1405
BsoBI	CYCGRG	1 cut(s)	840
Bsp1286I	GDGCHC	6 cut(s)	137, 190, 316, 500, 787, 928
Bsp143I	GATC	7 cut(s)	96, 935, 949, 1126, 1220, 1320, 1478
Bsp1720I	GCTNAGC	3 cut(s)	136, 786, 1014
BspANI	GGCC	7 cut(s)	105, 249, 282, 536, 688, 1159, 1405
BspCNI	CTCAG	6 cut(s)	149, 718, 799, 1027, 1267, 1453
BspFNI	CGCG	2 cut(s)	45, 948
BspLI	GGNNCC	6 cut(s)	37, 69, 313, 736, 937, 1331
BspPI	GGATC	3 cut(s)	930, 943, 1228
BspT107I	GGYRCC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	6 cut(s)	106, 225, 283, 316, 616, 1160
BssMI	GATC	7 cut(s)	96, 935, 949, 1126, 1220, 1320, 1478
BssT1I	CCWWGG	1 cut(s)	1160
Bst2UI	CCWGG	3 cut(s)	618, 987, 1436
Bst4CI	ACNGT	3 cut(s)	401, 562, 626
Bst6I	CTCTTC	2 cut(s)	952, 1027
BstBAI	YACGTR	1 cut(s)	1196
BstC8I	GCNNGC	6 cut(s)	34, 47, 78, 377, 765, 1407
BstDSI	CCRYGG	3 cut(s)	106, 283, 316
BstENI	CCTNNNNNAGG	2 cut(s)	159, 1180
BstF5I	GGATG	8 cut(s)	433, 610, 689, 1060, 1074, 1398, 1402, 1406
BstFNI	CGCG	2 cut(s)	45, 948
BstH2I	RGCGCY	4 cut(s)	52, 77, 92, 143
BstHHI	GCGC	4 cut(s)	51, 76, 91, 142
BstKTI	GATC	7 cut(s)	99, 938, 952, 1129, 1223, 1323, 1481
BstMAI	GTCTC	5 cut(s)	156, 246, 632, 722, 1346
BstMBI	GATC	7 cut(s)	96, 935, 949, 1126, 1220, 1320, 1478
BstMCI	CGRYCG	2 cut(s)	106, 1323
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 80, 86, 255, 279, 288, 542, 1306
BstNI	CCWGG	3 cut(s)	618, 987, 1436
BstSCI	CCNGG	6 cut(s)	190, 225, 616, 737, 985, 1434
BstSFI	CTRYAG	1 cut(s)	538
BstSLI	GKGCMC	1 cut(s)	316
BstSNI	TACGTA	1 cut(s)	1196
BstUI	CGCG	2 cut(s)	45, 948
BstV1I	GCAGC	4 cut(s)	98, 747, 1284, 1495
BstX2I	RGATCY	2 cut(s)	935, 1478
BstXI	CCANNNNNNTGG	1 cut(s)	1504
BstYI	RGATCY	2 cut(s)	935, 1478
BstZI	CGGCCG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	7 cut(s)	105, 249, 282, 536, 688, 1159, 1405
BtgI	CCRYGG	3 cut(s)	106, 283, 316
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	8 cut(s)	433, 610, 689, 1060, 1074, 1398, 1402, 1406
BtsIMutI	CAGTG	1 cut(s)	1497
Cac8I	GCNNGC	6 cut(s)	34, 47, 78, 377, 765, 1407
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	4 cut(s)	51, 76, 91, 142
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	4 cut(s)	68, 176, 247, 812
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	4 cut(s)	4, 127, 773, 906
CspAI	ACCGGT	1 cut(s)	178
CviAII	CATG	6 cut(s)	524, 572, 1078, 1155, 1373, 1421
CviQI	GTAC	4 cut(s)	4, 127, 773, 906
DpnI	GATC	7 cut(s)	98, 937, 951, 1128, 1222, 1322, 1480
DpnII	GATC	7 cut(s)	96, 935, 949, 1126, 1220, 1320, 1478
DraI	TTTAAA	1 cut(s)	1468
EaeI	YGGCCR	4 cut(s)	103, 686, 1157, 1403
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	952, 1027
EarI	CTCTTC	2 cut(s)	952, 1027
Ecl136II	GAGCTC	1 cut(s)	188
EclXI	CGGCCG	1 cut(s)	103
Eco105I	TACGTA	1 cut(s)	1196
Eco130I	CCWWGG	1 cut(s)	1160
Eco24I	GRGCYC	3 cut(s)	137, 190, 500
Eco47I	GGWCC	3 cut(s)	68, 176, 812
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	840
EcoICRI	GAGCTC	1 cut(s)	188
EcoNI	CCTNNNNNAGG	2 cut(s)	159, 1180
EcoRI	GAATTC	1 cut(s)	1335
EcoRII	CCWGG	3 cut(s)	616, 985, 1434
EcoT14I	CCWWGG	1 cut(s)	1160
EcoT38I	GRGCYC	3 cut(s)	137, 190, 500
ErhI	CCWWGG	1 cut(s)	1160
Esp3I	CGTCTC	2 cut(s)	246, 1346
FaeI	CATG	6 cut(s)	527, 575, 1081, 1158, 1376, 1424
FalI	AAGNNNNNCTT	2 cut(s)	1024, 1056
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	6 cut(s)	523, 571, 1077, 1154, 1372, 1420
FauI	CCCGC	3 cut(s)	223, 266, 368
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	9 cut(s)	81, 84, 87, 289, 292, 761, 1091, 1298, 1509
FokI	GGATG	8 cut(s)	440, 617, 696, 1067, 1081, 1405, 1409, 1413
FriOI	GRGCYC	3 cut(s)	137, 190, 500
Fsp4HI	GCNGC	9 cut(s)	81, 84, 87, 289, 292, 761, 1091, 1298, 1509
FspBI	CTAG	3 cut(s)	546, 1046, 1540
GlaI	GCGC	4 cut(s)	50, 75, 90, 141
GluI	GCNGC	9 cut(s)	81, 84, 87, 289, 292, 761, 1091, 1298, 1509
HaeII	RGCGCY	4 cut(s)	52, 77, 92, 143
HaeIII	GGCC	7 cut(s)	105, 249, 282, 536, 688, 1159, 1405
HapII	CCGG	6 cut(s)	146, 179, 191, 227, 336, 738
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	4 cut(s)	51, 76, 91, 142
Hin1II	CATG	6 cut(s)	527, 575, 1081, 1158, 1376, 1424
Hin6I	GCGC	4 cut(s)	49, 74, 89, 140
HinP1I	GCGC	4 cut(s)	49, 74, 89, 140
HinfI	GANTC	2 cut(s)	1172, 1316
HpaII	CCGG	6 cut(s)	146, 179, 191, 227, 336, 738
HphI	GGTGA	4 cut(s)	431, 517, 818, 1436
Hpy166II	GTNNAC	2 cut(s)	395, 887
Hpy188I	TCNGA	4 cut(s)	520, 594, 1276, 1341
Hpy188III	TCNNGA	6 cut(s)	414, 580, 602, 629, 842, 863
Hpy8I	GTNNAC	2 cut(s)	395, 887
Hpy99I	CGWCG	2 cut(s)	32, 635
HpyAV	CCTTC	2 cut(s)	502, 510
HpyCH4III	ACNGT	3 cut(s)	401, 562, 626
HpyCH4IV	ACGT	3 cut(s)	596, 633, 1195
HpyCH4V	TGCA	3 cut(s)	608, 912, 1511
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 80, 86, 255, 279, 288, 542, 1306
HpySE526I	ACGT	3 cut(s)	596, 633, 1195
Hsp92II	CATG	6 cut(s)	527, 575, 1081, 1158, 1376, 1424
HspAI	GCGC	4 cut(s)	49, 74, 89, 140
Kzo9I	GATC	7 cut(s)	96, 935, 949, 1126, 1220, 1320, 1478
LmnI	GCTCC	7 cut(s)	41, 185, 193, 338, 459, 931, 1329
Lsp1109I	GCAGC	4 cut(s)	98, 747, 1284, 1495
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	3 cut(s)	546, 1046, 1540
MaeII	ACGT	3 cut(s)	596, 633, 1195
MaeIII	GTNAC	8 cut(s)	56, 365, 419, 620, 1036, 1196, 1367, 1375
MalI	GATC	7 cut(s)	98, 937, 951, 1128, 1222, 1322, 1480
MboI	GATC	7 cut(s)	96, 935, 949, 1126, 1220, 1320, 1478
MboII	GAAGA	4 cut(s)	490, 878, 969, 1044
MflI	RGATCY	2 cut(s)	935, 1478
MhlI	GDGCHC	6 cut(s)	137, 190, 316, 500, 787, 928
MlsI	TGGCCA	3 cut(s)	688, 1159, 1405
MluNI	TGGCCA	3 cut(s)	688, 1159, 1405
MlyI	GAGTC	1 cut(s)	1310
MmeI	TCCRAC	3 cut(s)	697, 987, 1053
Mox20I	TGGCCA	3 cut(s)	688, 1159, 1405
MroXI	GAANNNNTTC	1 cut(s)	482
MscI	TGGCCA	3 cut(s)	688, 1159, 1405
MseI	TTAA	2 cut(s)	1388, 1467
MslI	CAYNNNNRTG	3 cut(s)	402, 780, 1502
Msp20I	TGGCCA	3 cut(s)	688, 1159, 1405
MspI	CCGG	6 cut(s)	146, 179, 191, 227, 336, 738
MspR9I	CCNGG	6 cut(s)	192, 227, 618, 739, 987, 1436
MvaI	CCWGG	3 cut(s)	618, 987, 1436
MvnI	CGCG	2 cut(s)	45, 948
MwoI	GCNNNNNNNGC	8 cut(s)	42, 80, 86, 255, 279, 288, 542, 1306
NciI	CCSGG	3 cut(s)	192, 227, 739
NdeII	GATC	7 cut(s)	96, 935, 949, 1126, 1220, 1320, 1478
NlaIII	CATG	6 cut(s)	527, 575, 1081, 1158, 1376, 1424
NlaIV	GGNNCC	6 cut(s)	37, 69, 313, 736, 937, 1331
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	5 cut(s)	56, 419, 1036, 1367, 1375
OliI	CACNNNNGTG	2 cut(s)	402, 1502
PaeR7I	CTCGAG	1 cut(s)	840
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	1172
PflFI	GACNNNGTC	1 cut(s)	1373
PfoI	TCCNGGA	2 cut(s)	190, 737
PinAI	ACCGGT	1 cut(s)	178
PkrI	GCNGC	9 cut(s)	82, 85, 88, 290, 293, 762, 1092, 1299, 1510
Ple19I	CGATCG	1 cut(s)	1323
PleI	GAGTC	1 cut(s)	1310
PpsI	GAGTC	1 cut(s)	1310
Ppu21I	YACGTR	1 cut(s)	1196
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	3 cut(s)	616, 985, 1434
PspGI	CCWGG	3 cut(s)	616, 985, 1434
PspN4I	GGNNCC	6 cut(s)	37, 69, 313, 736, 937, 1331
PspPI	GGNCC	4 cut(s)	68, 176, 247, 812
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	935, 1478
PsyI	GACNNNGTC	1 cut(s)	1373
PvuI	CGATCG	1 cut(s)	1323
RsaI	GTAC	4 cut(s)	5, 128, 774, 907
RsaNI	GTAC	4 cut(s)	4, 127, 773, 906
RseI	CAYNNNNRTG	3 cut(s)	402, 780, 1502
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	1388, 1467
SatI	GCNGC	9 cut(s)	81, 84, 87, 289, 292, 761, 1091, 1298, 1509
Sau3AI	GATC	7 cut(s)	96, 935, 949, 1126, 1220, 1320, 1478
Sau96I	GGNCC	4 cut(s)	68, 176, 247, 812
ScaI	AGTACT	1 cut(s)	907
SchI	GAGTC	1 cut(s)	1310
ScrFI	CCNGG	6 cut(s)	192, 227, 618, 739, 987, 1436
SduI	GDGCHC	6 cut(s)	137, 190, 316, 500, 787, 928
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	538
Sfr274I	CTCGAG	1 cut(s)	840
SinI	GGWCC	3 cut(s)	68, 176, 812
SlaI	CTCGAG	1 cut(s)	840
SmiMI	CAYNNNNRTG	3 cut(s)	402, 780, 1502
SmlI	CTYRAG	3 cut(s)	678, 801, 840
SmoI	CTYRAG	3 cut(s)	678, 801, 840
SnaBI	TACGTA	1 cut(s)	1196
SspMI	CTAG	3 cut(s)	546, 1046, 1540
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	6 cut(s)	190, 225, 616, 737, 985, 1434
StyI	CCWWGG	1 cut(s)	1160
TaaI	ACNGT	3 cut(s)	401, 562, 626
TaiI	ACGT	3 cut(s)	599, 636, 1198
TaqI	TCGA	6 cut(s)	630, 793, 841, 1170, 1281, 1319
TatI	WGTACW	1 cut(s)	905
TauI	GCSGC	5 cut(s)	83, 86, 291, 294, 1093
TfiI	GAWTC	1 cut(s)	1172
Tru1I	TTAA	2 cut(s)	1388, 1467
Tru9I	TTAA	2 cut(s)	1388, 1467
TscAI	CASTG	1 cut(s)	1504
TseFI	GTSAC	5 cut(s)	56, 419, 1036, 1367, 1375
TseI	GCWGC	4 cut(s)	86, 760, 1297, 1508
Tsp45I	GTSAC	5 cut(s)	56, 419, 1036, 1367, 1375
TspDTI	ATGAA	2 cut(s)	540, 1409
TspRI	CASTG	1 cut(s)	1504
Tth111I	GACNNNGTC	1 cut(s)	1373
VpaK11BI	GGWCC	3 cut(s)	68, 176, 812
XagI	CCTNNNNNAGG	2 cut(s)	159, 1180
XapI	RAATTY	4 cut(s)	481, 858, 878, 1335
XhoI	CTCGAG	1 cut(s)	840
XmiI	GTMKAC	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	3 cut(s)	546, 1046, 1540
ZrmI	AGTACT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.