Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006031.1

Orthogroup ID

OG0002015

Physical Location & Seq

Genomic Coordinates Forward (+)

123422 .. 127012

Gene Structure 3591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006031.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

atgaagctggatgtggatgtgttgagatacctcactaaagaggatttcagggttttaaccgctgtcgaaatgggaatgcgaaatcatgaaatcgtacccgctgaactggtggagcgtatagctgcgctcaagcatggtggcacttacaaagttatgaaaaatctgctcaagcataagctcttgcaccacgacgcctctaaatatgatgggtttcggctaacgtacctcggttatgattttcttgcaattaagactttggtcaaccgtggagtcttttcagccgttggtcgccaacttggtgttggaaaagagtctgatatttttgaggtggccactgaagatggtacagtgatggcaatgaaattgcacaggcttggtagaacttctttcagggctgtcaagtctaagcgtgattacttaaaacatcgtagcagtttcaattggctatacttgtcccgtcttgctgcacttagagaattttcttttatgaaggctttagaagagcatggttttcctgttccaaatgcagtagattgtaacaggcattgtgtgattatgtcactagtgaagcaattggaaaatcctgagacagttttcaatactatcattgggctcgttgttcgtctggcagaacatggtttgattcactgtgacttcaatgaatttaacattatgattgatgatgacgagaaggtcaccatgattgattttccccaaatggtctctgtttcccatcgtaatgcacaaatgtactttgatcgtgatgtggaatgtgtctttaagtttttcagcaagagattcaacatgtctttccatgaatgcacagctgatattgatggaacagcggtggacacagatgatagtggcaggccttcgtttacttcaatagcgaaagatactgattttcttgataaggaactttctgctagtgggtttactaggaaggatcaggaggaaattgctaagtttattgaaggagggatcaagaaggatgctagttctgatgatgaagatactgaagatgacgagcacatctctgtgttaaatgaagcaaacacaatgggtgttgattcactgcatgtgacagatcagacgttacagcatgatgagcaagttgaaccagagggcaatgtaagaacatgtgaagcaggtcccatcagtgaacccgaaaatgaagatgggagtaatgaggagggagataatgagacagttaataatgacaatgatgctgagctggaaaaacgcttgaacaaggtgaggcgacgtgctgtaacagcagcccgtggaggacgaaaaacttttgcatccagaaatacctataaagacaagggtggtaaatcctctaacagttccaaaatccagagacaattaagtagctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

460

Amino Acids

52.15

Weight (kDa)

5.53

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51270 AT3G51270 AT3G51270 AT3G51270
fragaria_vesca	FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_7g06440 FvH4_7g06440
malus_domestica	MD01G1035500.v1.1 MD02G1001000.v1.1 MD15G1320300.v1.1
prunus_persica	Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1
pyrus_communis	pycom01g06260 pycom15g28140
rosa_chinensis	RchiOBHm_Chr1g0334711 RchiOBHm_Chr7g0210541
rosa_laevigata	RLG00000026279 RLG00000029431
rosa_multiflora	Rmu_sc0002295.1_g000002 Rmu_sc0006031.1_g000024
rosa_roxburghii	Rroxscaffold_3G00236050 Rroxscaffold_4G00279110 Rroxscaffold_4G00316660
rosa_rugosa	Rorug01G0115100 Rorug01G0115200 Rorug07G0122000 Rorug07G0122100 Rorug07G0122100 Rorug07G0122200 Rorug07G0122200
rosa_samantha	Rh1AG140300 Rh1BG107400 Rh1CG132200 Rh1DG144300 Rh7AG254300 Rh7BG249600 Rh7CG271200 Rh7DG262000
rosa_wichuraiana	Rw1G011570 Rw7G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	692
Acc36I	ACCTGC	1 cut(s)	1139
AciI	CCGC	3 cut(s)	60, 99, 845
AclWI	GGATC	2 cut(s)	954, 989
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	476, 662
AcuI	CTGAAG	2 cut(s)	357, 1038
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	4 cut(s)	96, 224, 346, 752
AflIII	ACRYGT	2 cut(s)	804, 1139
AgsI	TTSAA	8 cut(s)	439, 598, 658, 802, 885, 974, 1118, 1249
AhlI	ACTAGT	1 cut(s)	562
AjiI	CACGTC	1 cut(s)	1265
AluBI	AGCT	6 cut(s)	7, 122, 178, 827, 1234, 1377
AluI	AGCT	6 cut(s)	7, 122, 178, 827, 1234, 1377
Alw21I	GWGCWC	1 cut(s)	1032
Alw26I	GTCTC	4 cut(s)	581, 727, 1199, 1357
AlwI	GGATC	2 cut(s)	954, 989
AoxI	GGCC	2 cut(s)	330, 869
ApeKI	GCWGC	3 cut(s)	122, 464, 1277
ApoI	RAATTY	2 cut(s)	476, 662
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	1151
AsuHPI	GGTGA	2 cut(s)	688, 1267
AvaII	GGWCC	1 cut(s)	1151
BalI	TGGCCA	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	1032
BbvI	GCAGC	3 cut(s)	109, 451, 1289
BccI	CCATC	7 cut(s)	200, 335, 346, 741, 830, 1163, 1172
BceAI	ACGGC	1 cut(s)	266
BcoDI	GTCTC	4 cut(s)	581, 727, 1199, 1357
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	4 cut(s)	563, 927, 939, 996
BfuAI	ACCTGC	1 cut(s)	1139
BisI	GCNGC	3 cut(s)	123, 465, 1278
BlpI	GCTNAGC	1 cut(s)	1230
BlsI	GCNGC	3 cut(s)	124, 466, 1279
Bme18I	GGWCC	1 cut(s)	1151
BmgBI	CACGTC	1 cut(s)	1265
BmgT120I	GGNCC	1 cut(s)	1151
BmiI	GGNNCC	1 cut(s)	1153
BmsI	GCATC	3 cut(s)	982, 1216, 1313
BoxI	GACNNNNGTC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	1019, 1051
Bpu1102I	GCTNAGC	1 cut(s)	1230
BpuEI	CTTGAG	2 cut(s)	113, 152
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	727
BsaJI	CCNNGG	3 cut(s)	226, 265, 1282
Bse1I	ACTGG	1 cut(s)	111
Bse3DI	GCAATG	2 cut(s)	363, 1135
BseDI	CCNNGG	3 cut(s)	226, 265, 1282
BseGI	GGATG	4 cut(s)	16, 22, 997, 1304
BseMI	GCAATG	2 cut(s)	363, 1135
BseMII	CTCAG	2 cut(s)	576, 1221
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	1205
BseXI	GCAGC	3 cut(s)	109, 451, 1289
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	2 cut(s)	332, 871
BsiHKAI	GWGCWC	1 cut(s)	1032
BslFI	GGGAC	2 cut(s)	439, 1137
BsmAI	GTCTC	4 cut(s)	581, 727, 1199, 1357
BsmFI	GGGAC	2 cut(s)	439, 1137
BsmI	GAATGC	2 cut(s)	81, 824
BsnI	GGCC	2 cut(s)	332, 871
Bso31I	GGTCTC	1 cut(s)	727
Bsp1286I	GDGCHC	2 cut(s)	615, 1032
Bsp143I	GATC	4 cut(s)	757, 946, 981, 1087
Bsp1720I	GCTNAGC	1 cut(s)	1230
BspACI	CCGC	3 cut(s)	60, 99, 845
BspANI	GGCC	2 cut(s)	332, 871
BspCNI	CTCAG	2 cut(s)	577, 1222
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	1153
BspMI	ACCTGC	1 cut(s)	1139
BspPI	GGATC	2 cut(s)	954, 989
BspQI	GCTCTTC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	727
BsrDI	GCAATG	2 cut(s)	363, 1135
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	3 cut(s)	226, 265, 1282
BssMI	GATC	4 cut(s)	757, 946, 981, 1087
BssNI	GRCGYC	1 cut(s)	192
Bst4CI	ACNGT	6 cut(s)	266, 349, 592, 650, 1210, 1349
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	869
BstDEI	CTNAG	5 cut(s)	405, 470, 585, 963, 1230
BstDSI	CCRYGG	2 cut(s)	265, 1282
BstEII	GGTNACC	1 cut(s)	694
BstF5I	GGATG	4 cut(s)	16, 22, 997, 1304
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	4 cut(s)	760, 949, 984, 1090
BstMAI	GTCTC	4 cut(s)	581, 727, 1199, 1357
BstMBI	GATC	4 cut(s)	757, 946, 981, 1087
BstMWI	GCNNNNNNNGC	2 cut(s)	1108, 1274
BstNSI	RCATGY	3 cut(s)	808, 1082, 1143
BstPAI	GACNNNNGTC	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	694
BstV1I	GCAGC	3 cut(s)	109, 451, 1289
BsuRI	GGCC	2 cut(s)	332, 871
BtgI	CCRYGG	2 cut(s)	265, 1282
BtrI	CACGTC	1 cut(s)	1265
BtsCI	GGATG	4 cut(s)	16, 22, 997, 1304
BtsI	GCAGTG	1 cut(s)	1073
BtsIMutI	CAGTG	5 cut(s)	333, 354, 646, 1073, 1165
BveI	ACCTGC	1 cut(s)	1139
Cac8I	GCNNGC	1 cut(s)	869
CciI	TCATGA	1 cut(s)	85
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	1151
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	4 cut(s)	95, 223, 345, 751
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviQI	GTAC	4 cut(s)	95, 223, 345, 751
DdeI	CTNAG	5 cut(s)	405, 470, 585, 963, 1230
DpnI	GATC	4 cut(s)	759, 948, 983, 1089
DpnII	GATC	4 cut(s)	757, 946, 981, 1087
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	871
Eco24I	GRGCYC	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	1151
Eco57I	CTGAAG	2 cut(s)	357, 1038
Eco91I	GGTNACC	1 cut(s)	694
EcoO109I	RGGNCCY	1 cut(s)	1151
EcoO65I	GGTNACC	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	615
FaqI	GGGAC	2 cut(s)	439, 1137
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	123, 465, 1278
FokI	GGATG	4 cut(s)	23, 29, 1004, 1291
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	3 cut(s)	123, 465, 1278
FspBI	CTAG	4 cut(s)	563, 927, 939, 996
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	3 cut(s)	123, 465, 1278
HaeIII	GGCC	2 cut(s)	332, 871
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	5 cut(s)	270, 311, 643, 798, 1070
HphI	GGTGA	2 cut(s)	688, 1267
Hpy166II	GTNNAC	5 cut(s)	262, 850, 879, 936, 1163
Hpy188I	TCNGA	3 cut(s)	316, 1003, 1092
Hpy188III	TCNNGA	8 cut(s)	86, 584, 761, 908, 950, 985, 1308, 1360
Hpy8I	GTNNAC	5 cut(s)	262, 850, 879, 936, 1163
Hpy99I	CGWCG	2 cut(s)	194, 1266
HpyAV	CCTTC	6 cut(s)	484, 685, 882, 937, 968, 982
HpyCH4III	ACNGT	6 cut(s)	266, 349, 592, 650, 1210, 1349
HpyCH4IV	ACGT	3 cut(s)	221, 1094, 1264
HpyCH4V	TGCA	9 cut(s)	184, 245, 367, 467, 527, 743, 822, 1078, 1304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1108, 1274
HpyF3I	CTNAG	5 cut(s)	405, 470, 585, 963, 1230
HpySE526I	ACGT	3 cut(s)	221, 1094, 1264
Hsp92I	GRCGYC	1 cut(s)	192
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	4 cut(s)	757, 946, 981, 1087
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	3 cut(s)	109, 451, 1289
LweI	GCATC	3 cut(s)	982, 1216, 1313
MaeI	CTAG	4 cut(s)	563, 927, 939, 996
MaeII	ACGT	3 cut(s)	221, 1094, 1264
MaeIII	GTNAC	7 cut(s)	536, 558, 650, 694, 1081, 1095, 1270
MalI	GATC	4 cut(s)	759, 948, 983, 1089
MboI	GATC	4 cut(s)	757, 946, 981, 1087
MboII	GAAGA	5 cut(s)	350, 512, 1022, 1031, 1187
MfeI	CAATTG	2 cut(s)	439, 572
MhlI	GDGCHC	2 cut(s)	615, 1032
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	8 cut(s)	246, 362, 439, 476, 572, 662, 957, 1367
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	279, 320
MmeI	TCCRAC	1 cut(s)	283
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	8 cut(s)	56, 249, 419, 666, 780, 1043, 1212, 1370
MslI	CAYNNNNRTG	2 cut(s)	738, 1037
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	4 cut(s)	62, 101, 827, 845
MunI	CAATTG	2 cut(s)	439, 572
Mva1269I	GAATGC	2 cut(s)	81, 824
MwoI	GCNNNNNNNGC	2 cut(s)	1108, 1274
NdeII	GATC	4 cut(s)	757, 946, 981, 1087
NlaIV	GGNNCC	1 cut(s)	1153
NmuCI	GTSAC	4 cut(s)	558, 650, 694, 1081
NspI	RCATGY	3 cut(s)	808, 1082, 1143
PagI	TCATGA	1 cut(s)	85
PceI	AGGCCT	1 cut(s)	871
PciI	ACATGT	2 cut(s)	804, 1139
PciSI	GCTCTTC	1 cut(s)	495
PctI	GAATGC	2 cut(s)	81, 824
PfeI	GAWTC	3 cut(s)	643, 798, 1070
PkrI	GCNGC	3 cut(s)	124, 466, 1279
PleI	GAGTC	2 cut(s)	278, 319
PpsI	GAGTC	2 cut(s)	278, 319
PpuMI	RGGWCCY	1 cut(s)	1151
PscI	ACATGT	2 cut(s)	804, 1139
PshAI	GACNNNNGTC	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	1151
PspEI	GGTNACC	1 cut(s)	694
PspN4I	GGNNCC	1 cut(s)	1153
PspPI	GGNCC	1 cut(s)	1151
PspPPI	RGGWCCY	1 cut(s)	1151
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	4 cut(s)	96, 224, 346, 752
RsaNI	GTAC	4 cut(s)	95, 223, 345, 751
RseI	CAYNNNNRTG	2 cut(s)	738, 1037
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	8 cut(s)	56, 249, 419, 666, 780, 1043, 1212, 1370
SatI	GCNGC	3 cut(s)	123, 465, 1278
Sau3AI	GATC	4 cut(s)	757, 946, 981, 1087
Sau96I	GGNCC	1 cut(s)	1151
SchI	GAGTC	2 cut(s)	279, 320
SduI	GDGCHC	2 cut(s)	615, 1032
SfaNI	GCATC	3 cut(s)	982, 1216, 1313
SinI	GGWCC	1 cut(s)	1151
SmiMI	CAYNNNNRTG	2 cut(s)	738, 1037
SmlI	CTYRAG	2 cut(s)	128, 167
SmoI	CTYRAG	2 cut(s)	128, 167
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	8 cut(s)	246, 362, 439, 476, 572, 662, 957, 1367
SseBI	AGGCCT	1 cut(s)	871
SsiI	CCGC	3 cut(s)	60, 99, 845
SspMI	CTAG	4 cut(s)	563, 927, 939, 996
StuI	AGGCCT	1 cut(s)	871
TaaI	ACNGT	6 cut(s)	266, 349, 592, 650, 1210, 1349
TaiI	ACGT	3 cut(s)	224, 1097, 1267
TaqI	TCGA	1 cut(s)	66
TasI	AATT	8 cut(s)	246, 362, 439, 476, 572, 662, 957, 1367
TatI	WGTACW	1 cut(s)	750
TfiI	GAWTC	3 cut(s)	643, 798, 1070
Tru1I	TTAA	8 cut(s)	56, 249, 419, 666, 780, 1043, 1212, 1370
Tru9I	TTAA	8 cut(s)	56, 249, 419, 666, 780, 1043, 1212, 1370
TscAI	CASTG	5 cut(s)	340, 354, 653, 1080, 1165
TseFI	GTSAC	4 cut(s)	558, 650, 694, 1081
TseI	GCWGC	3 cut(s)	122, 464, 1277
Tsp45I	GTSAC	4 cut(s)	558, 650, 694, 1081
TspRI	CASTG	5 cut(s)	340, 354, 653, 1080, 1165
VpaK11BI	GGWCC	1 cut(s)	1151
XapI	RAATTY	2 cut(s)	476, 662
XceI	RCATGY	3 cut(s)	808, 1082, 1143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XspI	CTAG	4 cut(s)	563, 927, 939, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.