Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002015

Physical Location & Seq

Genomic Coordinates Reverse (-)

6488830 .. 6493222

Gene Structure 4393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGAAGTTGGATGTGGATGTGTTGAGATACCTCACAAAAGAGGATTTTAGGGTATTAACCGCTGTCGAAATGGGAATGAGAAATCATGAAATCGTACCCGCTGAACTGATTGAGCGTATAGCAGCGCTCAAGCATGGTGGCACTTATAAAGTTATGAAAAATCTGCTCAAGCATAAGCTCTTGCACCACGATGCCTCCAAATATGATGGATTTCGGCTAACGTATCTCGGTTATGATTTTCTTGCAATAAAGACTTTGGTTAACCGTGGAGTCTTTTCAGCTGTTGGTCGTCAACTTGGTGTTGGAAAAGAGTCTGATATTTTTGAGGTGGCCACCGAAGATGGTACAGTGATGGCAATGAAATTGCACAGGCTCGGTAGAACTTCTTTCAGGGCTGTCAAGTCTAAGCGTGATTACTTAAAACATCGTAGCAGTTTCAATTGGCTATACTTGTCTCGACTAGCTGCACTCAGAGAGTTTTCTTTTATGAAGGCTTTAGAAGAGCATGGTTTTCCTGTTCCAAATGCTGTAGATTGTAATAGGCATTGTGTGATTATGTCACTAGTACCAGGCTACCCACTTGTGCAGGTGAAGCAATTGGAAAATCCTGAGATAGTTTTCAATACTATCATTGGGATCGTTGTTCGTCTGGCAGAACATGGTTTGATTCACTGTGACTTCAATGAATTTAACATTATGATTGATGATGATGAGAAGGTCACCATGATTGATTTTCCACAAATGGTCTCTGTATCACATCGTAATGCTCAAATGTACTTTGACCGTGATGTAGAATGTGTCTTCAAGTTTTTCAGCAAGAGGTTCAACATGTCTTTCCATGAATGCACAGCTGATATTGATGGCACAGCAGTGGACACAGATGATAGTGGTAGGCCTTCTTTTACTTCAATAGCAAAGGATACTGGTTTTTTGGACAAAGAACTTTCTGCCAGTGGGTTTACTAAAAAGGATCATGAAGAAATTGCTAAGTTTATTGAAGGAGGGATAAAGAAGGATGCTAGTTCTGATGATGAAGATACTGAAGATGTTGGAGATACTGAAGATGATGAACACACCTCTGTGCTAAATGAAGCAAACACAATGGGTATTGATTCACTGCAAGTGGTAGATCAGGTGTTACAGCATGATGAGCAAGTTGAACTAGAGGGCAATGTAAGAACATGTGAAGGAGGTCCGAGCAGTGAACCCGAAAATGAAGACAGCAGAAACGAGGAGGGAGATGATGAGACAGTTGATGATGACAATGATGCTGAGTTGGAAAAACGCTTAAACAAGGTCAGGCGACGTGCTGTCACAGCAGCCCGTGGAGGACGAAAAACTTTTGCGTCCAGAAATACCTATAAAGACAAGGGTGGTAAATCCTCTAACAGTTCCAAAATCCAGAGACAATTAAGTAGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

475

Amino Acids

53.63

Weight (kDa)

5.32

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rio2_N	PF09202	8 - 89	3.1e-34	Rio2, N-terminal
RIO1	PF01163	106 - 280	1.4e-54	RIO domain
ABC1	PF03109	170 - 260	3.4e-07	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51270 AT3G51270 AT3G51270 AT3G51270
fragaria_vesca	FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_4g10760 FvH4_7g06440 FvH4_7g06440
malus_domestica	MD01G1035500.v1.1 MD02G1001000.v1.1 MD15G1320300.v1.1
prunus_persica	Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1 Prupe.5G084300_v2.0.a1
pyrus_communis	pycom01g06260 pycom15g28140
rosa_chinensis	RchiOBHm_Chr1g0334711 RchiOBHm_Chr7g0210541
rosa_laevigata	RLG00000026279 RLG00000029431
rosa_multiflora	Rmu_sc0002295.1_g000002 Rmu_sc0006031.1_g000024
rosa_roxburghii	Rroxscaffold_3G00236050 Rroxscaffold_4G00279110 Rroxscaffold_4G00316660
rosa_rugosa	Rorug01G0115100 Rorug01G0115200 Rorug07G0122000 Rorug07G0122100 Rorug07G0122100 Rorug07G0122200 Rorug07G0122200
rosa_samantha	Rh1AG140300 Rh1BG107400 Rh1CG132200 Rh1DG144300 Rh7AG254300 Rh7BG249600 Rh7CG271200 Rh7DG262000
rosa_wichuraiana	Rw1G011570 Rw7G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AarI	CACCTGC	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	577
AciI	CCGC	2 cut(s)	60, 99
AclWI	GGATC	2 cut(s)	644, 978
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	686
AcuI	CTGAAG	2 cut(s)	1062, 1080
AfaI	GTAC	4 cut(s)	96, 346, 567, 776
AfeI	AGCGCT	1 cut(s)	126
AflIII	ACRYGT	2 cut(s)	828, 1181
AgsI	TTSAA	8 cut(s)	439, 622, 682, 805, 826, 909, 998, 1160
AhdI	GACNNNNNGTC	1 cut(s)	1310
AhlI	ACTAGT	1 cut(s)	562
AjiI	CACGTC	1 cut(s)	1307
AjnI	CCWGG	1 cut(s)	568
AleI	CACNNNNGTG	2 cut(s)	869, 1079
AluBI	AGCT	5 cut(s)	178, 281, 464, 851, 1419
AluI	AGCT	5 cut(s)	178, 281, 464, 851, 1419
Alw26I	GTCTC	4 cut(s)	459, 751, 1241, 1399
AlwI	GGATC	2 cut(s)	644, 978
Aor51HI	AGCGCT	1 cut(s)	126
AoxI	GGCC	2 cut(s)	330, 893
ApeKI	GCWGC	3 cut(s)	122, 464, 1319
ApoI	RAATTY	1 cut(s)	686
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	1193
AsuHPI	GGTGA	2 cut(s)	601, 712
AvaII	GGWCC	1 cut(s)	1193
BalI	TGGCCA	1 cut(s)	332
BbsI	GAAGAC	2 cut(s)	793, 1224
BbvI	GCAGC	3 cut(s)	134, 451, 1331
BccI	CCATC	4 cut(s)	200, 335, 346, 854
BciT130I	CCWGG	1 cut(s)	570
BciVI	GTATCC	1 cut(s)	913
BcoDI	GTCTC	4 cut(s)	459, 751, 1241, 1399
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	4 cut(s)	461, 563, 1020, 1163
BfmI	CTRYAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	577
BfuI	GTATCC	1 cut(s)	913
BisI	GCNGC	3 cut(s)	123, 465, 1320
BlsI	GCNGC	3 cut(s)	124, 466, 1321
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	1193
BmeRI	GACNNNNNGTC	1 cut(s)	1310
BmgBI	CACGTC	1 cut(s)	1307
BmgT120I	GGNCC	1 cut(s)	1193
BmrFI	CCNGG	1 cut(s)	570
BmsI	GCATC	3 cut(s)	181, 1006, 1258
BpiI	GAAGAC	2 cut(s)	793, 1224
BpuEI	CTTGAG	2 cut(s)	113, 152
BsaI	GGTCTC	1 cut(s)	751
BsaJI	CCNNGG	2 cut(s)	265, 1324
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bse1I	ACTGG	2 cut(s)	928, 951
Bse3DI	GCAATG	2 cut(s)	363, 1177
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	265, 1324
BseGI	GGATG	3 cut(s)	16, 22, 1021
BseMI	GCAATG	2 cut(s)	363, 1177
BseMII	CTCAG	3 cut(s)	484, 600, 1263
BseNI	ACTGG	2 cut(s)	928, 951
BseRI	GAGGAG	1 cut(s)	1247
BseXI	GCAGC	3 cut(s)	134, 451, 1331
BsgI	GTGCAG	2 cut(s)	450, 605
BshFI	GGCC	2 cut(s)	332, 895
BsmAI	GTCTC	4 cut(s)	459, 751, 1241, 1399
BsmI	GAATGC	1 cut(s)	848
BsnI	GGCC	2 cut(s)	332, 895
Bso31I	GGTCTC	1 cut(s)	751
Bsp143I	GATC	3 cut(s)	636, 970, 1129
BspACI	CCGC	2 cut(s)	60, 99
BspANI	GGCC	2 cut(s)	332, 895
BspCNI	CTCAG	3 cut(s)	483, 601, 1264
BspHI	TCATGA	2 cut(s)	85, 973
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	2 cut(s)	644, 978
BspQI	GCTCTTC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	751
BsrDI	GCAATG	2 cut(s)	363, 1177
BsrI	ACTGG	2 cut(s)	928, 951
BssECI	CCNNGG	2 cut(s)	265, 1324
BssMI	GATC	3 cut(s)	636, 970, 1129
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	6 cut(s)	266, 349, 674, 785, 1252, 1391
Bst6I	CTCTTC	1 cut(s)	495
BstDEI	CTNAG	5 cut(s)	405, 470, 609, 987, 1272
BstDSI	CCRYGG	2 cut(s)	265, 1324
BstEII	GGTNACC	1 cut(s)	718
BstF5I	GGATG	3 cut(s)	16, 22, 1021
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	3 cut(s)	639, 973, 1132
BstMAI	GTCTC	4 cut(s)	459, 751, 1241, 1399
BstMBI	GATC	3 cut(s)	636, 970, 1129
BstMWI	GCNNNNNNNGC	3 cut(s)	592, 1150, 1316
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	2 cut(s)	832, 1185
BstPI	GGTNACC	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	3 cut(s)	134, 451, 1331
BstV2I	GAAGAC	2 cut(s)	793, 1224
BsuI	GTATCC	1 cut(s)	913
BsuRI	GGCC	2 cut(s)	332, 895
BtgI	CCRYGG	2 cut(s)	265, 1324
BtrI	CACGTC	1 cut(s)	1307
BtsCI	GGATG	3 cut(s)	16, 22, 1021
BtsI	GCAGTG	3 cut(s)	876, 1115, 1207
BtsIMutI	CAGTG	6 cut(s)	354, 670, 876, 958, 1115, 1207
BveI	ACCTGC	1 cut(s)	577
CciI	TCATGA	2 cut(s)	85, 973
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	1193
CseI	GACGC	1 cut(s)	1335
Csp6I	GTAC	4 cut(s)	95, 345, 566, 775
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviQI	GTAC	4 cut(s)	95, 345, 566, 775
DdeI	CTNAG	5 cut(s)	405, 470, 609, 987, 1272
DpnI	GATC	3 cut(s)	638, 972, 1131
DpnII	GATC	3 cut(s)	636, 970, 1129
DriI	GACNNNNNGTC	1 cut(s)	1310
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	495
Eam1105I	GACNNNNNGTC	1 cut(s)	1310
EarI	CTCTTC	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	895
Eco31I	GGTCTC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	1193
Eco47III	AGCGCT	1 cut(s)	126
Eco57I	CTGAAG	2 cut(s)	1062, 1080
Eco91I	GGTNACC	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	568
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	123, 465, 1320
FokI	GGATG	3 cut(s)	23, 29, 1028
Fsp4HI	GCNGC	3 cut(s)	123, 465, 1320
FspBI	CTAG	4 cut(s)	461, 563, 1020, 1163
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	3 cut(s)	123, 465, 1320
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	332, 895
HgaI	GACGC	1 cut(s)	1335
HhaI	GCGC	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	2 cut(s)	262, 293
HindII	GTYRAC	2 cut(s)	262, 293
HinfI	GANTC	4 cut(s)	270, 311, 667, 1112
HpaI	GTTAAC	1 cut(s)	262
HphI	GGTGA	2 cut(s)	601, 712
Hpy166II	GTNNAC	5 cut(s)	262, 293, 874, 960, 1205
Hpy188I	TCNGA	4 cut(s)	316, 473, 1027, 1197
Hpy188III	TCNNGA	6 cut(s)	86, 456, 608, 974, 1350, 1402
Hpy8I	GTNNAC	5 cut(s)	262, 293, 874, 960, 1205
Hpy99I	CGWCG	1 cut(s)	1308
HpyAV	CCTTC	6 cut(s)	484, 709, 906, 992, 1006, 1181
HpyCH4III	ACNGT	6 cut(s)	266, 349, 674, 785, 1252, 1391
HpyCH4IV	ACGT	2 cut(s)	221, 1306
HpyCH4V	TGCA	7 cut(s)	184, 245, 367, 467, 586, 846, 1120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	592, 1150, 1316
HpyF3I	CTNAG	5 cut(s)	405, 470, 609, 987, 1272
HpySE526I	ACGT	2 cut(s)	221, 1306
HspAI	GCGC	1 cut(s)	125
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	636, 970, 1129
LguI	GCTCTTC	1 cut(s)	495
Lsp1109I	GCAGC	3 cut(s)	134, 451, 1331
LweI	GCATC	3 cut(s)	181, 1006, 1258
MaeI	CTAG	4 cut(s)	461, 563, 1020, 1163
MaeII	ACGT	2 cut(s)	221, 1306
MaeIII	GTNAC	5 cut(s)	558, 674, 718, 1137, 1312
MalI	GATC	3 cut(s)	638, 972, 1131
MboI	GATC	3 cut(s)	636, 970, 1129
MboII	GAAGA	8 cut(s)	350, 512, 793, 989, 1046, 1055, 1073, 1229
MfeI	CAATTG	2 cut(s)	439, 596
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	6 cut(s)	362, 439, 596, 686, 981, 1409
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	279, 320
MmeI	TCCRAC	3 cut(s)	283, 1030, 1257
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	6 cut(s)	56, 261, 419, 690, 1289, 1412
MslI	CAYNNNNRTG	4 cut(s)	189, 762, 869, 1079
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	4 cut(s)	62, 101, 281, 851
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	2 cut(s)	439, 596
Mva1269I	GAATGC	1 cut(s)	848
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	3 cut(s)	592, 1150, 1316
NdeII	GATC	3 cut(s)	636, 970, 1129
NmuCI	GTSAC	4 cut(s)	558, 674, 718, 1312
NspI	RCATGY	2 cut(s)	832, 1185
OliI	CACNNNNGTG	2 cut(s)	869, 1079
PagI	TCATGA	2 cut(s)	85, 973
PaqCI	CACCTGC	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	895
PciI	ACATGT	2 cut(s)	828, 1181
PciSI	GCTCTTC	1 cut(s)	495
PctI	GAATGC	1 cut(s)	848
PfeI	GAWTC	2 cut(s)	667, 1112
PkrI	GCNGC	3 cut(s)	124, 466, 1321
PleI	GAGTC	2 cut(s)	278, 319
PpsI	GAGTC	2 cut(s)	278, 319
PscI	ACATGT	2 cut(s)	828, 1181
PsiI	TTATAA	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	568
PspEI	GGTNACC	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	568
PspPI	GGNCC	1 cut(s)	1193
PvuII	CAGCTG	2 cut(s)	281, 851
RsaI	GTAC	4 cut(s)	96, 346, 567, 776
RsaNI	GTAC	4 cut(s)	95, 345, 566, 775
RseI	CAYNNNNRTG	4 cut(s)	189, 762, 869, 1079
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	6 cut(s)	56, 261, 419, 690, 1289, 1412
SatI	GCNGC	3 cut(s)	123, 465, 1320
Sau3AI	GATC	3 cut(s)	636, 970, 1129
Sau96I	GGNCC	1 cut(s)	1193
SchI	GAGTC	2 cut(s)	279, 320
ScrFI	CCNGG	1 cut(s)	570
SfaNI	GCATC	3 cut(s)	181, 1006, 1258
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	1 cut(s)	1193
SmiMI	CAYNNNNRTG	4 cut(s)	189, 762, 869, 1079
SmlI	CTYRAG	2 cut(s)	128, 167
SmoI	CTYRAG	2 cut(s)	128, 167
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	6 cut(s)	362, 439, 596, 686, 981, 1409
SseBI	AGGCCT	1 cut(s)	895
SsiI	CCGC	2 cut(s)	60, 99
SspMI	CTAG	4 cut(s)	461, 563, 1020, 1163
StuI	AGGCCT	1 cut(s)	895
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	6 cut(s)	266, 349, 674, 785, 1252, 1391
TaiI	ACGT	2 cut(s)	224, 1309
TaqI	TCGA	2 cut(s)	66, 457
TasI	AATT	6 cut(s)	362, 439, 596, 686, 981, 1409
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	2 cut(s)	667, 1112
Tru1I	TTAA	6 cut(s)	56, 261, 419, 690, 1289, 1412
Tru9I	TTAA	6 cut(s)	56, 261, 419, 690, 1289, 1412
TscAI	CASTG	6 cut(s)	354, 677, 876, 958, 1122, 1207
TseFI	GTSAC	4 cut(s)	558, 674, 718, 1312
TseI	GCWGC	3 cut(s)	122, 464, 1319
Tsp45I	GTSAC	4 cut(s)	558, 674, 718, 1312
TspRI	CASTG	6 cut(s)	354, 677, 876, 958, 1122, 1207
VpaK11BI	GGWCC	1 cut(s)	1193
XapI	RAATTY	1 cut(s)	686
XceI	RCATGY	2 cut(s)	832, 1185
XspI	CTAG	4 cut(s)	461, 563, 1020, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.