Rw7G021730

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
25229563 .. 25233129
3567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G021730.1

Sequence Viewer

Length: 1407 bp
ATGAAGCTGGATGTGGATGTGTTGAGATACCTCACTAAAGAGGATTTCAGGGTTTTAACCGCGGTCGAAATGGGAATGAGAAATCATGAAATCGTACCCGCTGAACTGGTGGAGCGTATAGCTGCGCTCAAGCATGGTGGCACTTACAAAGTTATGAAAAATCTGCTCAAGCATAAGCTCTTGCACCACGACGCCTCTAAATATGATGGGTTTCGGCTAACGTACCTCGGTTATGATTTCCTTGCAATTAAGACTTTGGTCAACCGTGGAGTCTTTTCAGCCGTTGGTCGCCAACTTGGTGTTGGAAAAGAGTCTGATATTTTTGAGGTGGCCACCGAAGATGGTACAGTGATGGCAATGAAATTGCACAGGCTTGGGAGAACTTCTTTCAGGGCTGTCAAGTCTAAGCGTGATTACTTAAAACATCGTAGCAGTTTCAATTGGCTATACTTGTCCCGTCTTGCTGCACTCAGAGAATTTTCTTTTATGAAGGCTTTAGAAGAGCATGGTTTTCCTGTTCCAAATGCAGTGGATTGTAACAGGCATTGTGTGATTATGTCACTAGTACCAGGCTACCCACTTGTGCAGGTGAAGCAATTGGAAAATCCTGAGATAGTTTTCAATACTATCATTGGGCTCGTTGTTCGTCTGACAGAACATGGTTTGATTCACTGTGACTTCAATGAATTTAACATTATGATTGATGATGACGAGAAGATCACCATGATTGATTTTCCCCAAATGGTCTCTGTATCACATCGTAATGCACAAATGTACTTTGACCGTGATGTGGAATGTGTCTTTAAGTTTTTCAGCAAGAGATTCAACATGTCTTTCCATGAATGCACAGCTGATATTGATGGAACAGCGGTGGACACAGACGATAGTGGCAGGCCTTCTTTTACTTCAATAGCAAAAGATACTGGTTTTCTAGACAAGGAACTTTCTGCTAGTGGGTTTACTAGGAAGGATCAGGAAGAAATTGCTAAGTTTATTGAAGGAGGGATCAAGAAGGATGCTAGTTCAGATGATGAAGATACTGAAGATGACGAGCACATCTCTGTGTTAAATGAAGCAAACACAATGGGTGTTGATTCACTGCATGTGGCAGATCAGACGTTACAGCACGATGAGCAGGTTGAACCAGAGGGCAATGTAAGAACATGTGAAGCAGGTCCCAGCAGTGAACCCAAAAATGAAGATGGGAGTAACGAGGAGGGAGATAATGAGACAGTTACTAATGACAATGATGCTGAGCTGGAAAAACGCTTGAACAAGGTGAGGCGACGTGCTGTAACAGCAGCCCGTGGAGGAAGAAAAACTTTTGCATCCAGAAATACCTACAAAGACAAGGGTGGTAAATCCTCTAACAGTTCCAAAATCCAGAGACAATTAAGTAGCTGGTAG

Protein Analysis

468

Amino Acids

52.93

Weight (kDa)

5.72

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rio2_N PF09202 8 - 89 6.5e-34 Rio2, N-terminal
RIO1 PF01163 106 - 280 1.4e-54 RIO domain
ABC1 PF03109 170 - 260 1e-07 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 577
Acc36I ACCTGC 3 cut(s) 577, 1126, 1163
AccII CGCG 1 cut(s) 62
AciI CCGC 4 cut(s) 60, 62, 99, 869
AclWI GGATC 2 cut(s) 978, 1013
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 2 cut(s) 476, 686
AcuI CTGAAG 1 cut(s) 1062
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 5 cut(s) 96, 224, 346, 567, 776
AfiI CCNNNNNNNGG 1 cut(s) 790
AflIII ACRYGT 2 cut(s) 828, 1163
AgsI TTSAA 8 cut(s) 439, 622, 682, 826, 909, 998, 1142, 1273
AhlI ACTAGT 1 cut(s) 562
AjiI CACGTC 1 cut(s) 1289
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 6 cut(s) 7, 122, 178, 851, 1258, 1401
AluI AGCT 6 cut(s) 7, 122, 178, 851, 1258, 1401
Alw21I GWGCWC 1 cut(s) 1056
Alw26I GTCTC 3 cut(s) 751, 1223, 1381
AlwI GGATC 2 cut(s) 978, 1013
AoxI GGCC 2 cut(s) 330, 893
ApeKI GCWGC 3 cut(s) 122, 464, 1301
ApoI RAATTY 2 cut(s) 476, 686
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 1175
AsuHPI GGTGA 3 cut(s) 601, 712, 1291
AvaII GGWCC 1 cut(s) 1175
BalI TGGCCA 1 cut(s) 332
BanII GRGCYC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 1056
BbvI GCAGC 3 cut(s) 109, 451, 1313
BccI CCATC 5 cut(s) 200, 335, 346, 854, 1196
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 570
BcoDI GTCTC 3 cut(s) 751, 1223, 1381
BcuI ACTAGT 1 cut(s) 562
BfaI CTAG 5 cut(s) 563, 932, 951, 963, 1020
BfuAI ACCTGC 3 cut(s) 577, 1126, 1163
BisI GCNGC 3 cut(s) 123, 465, 1302
BlpI GCTNAGC 1 cut(s) 1254
BlsI GCNGC 3 cut(s) 124, 466, 1303
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 1175
BmgBI CACGTC 1 cut(s) 1289
BmgT120I GGNCC 1 cut(s) 1175
BmiI GGNNCC 1 cut(s) 1177
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 3 cut(s) 1006, 1240, 1337
BoxI GACNNNNGTC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 1043, 1075
Bpu1102I GCTNAGC 1 cut(s) 1254
BpuEI CTTGAG 2 cut(s) 113, 152
BsaHI GRCGYC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 751
BsaJI CCNNGG 4 cut(s) 60, 226, 265, 1306
Bsc4I CCNNNNNNNGG 1 cut(s) 790
Bse1I ACTGG 2 cut(s) 111, 928
Bse3DI GCAATG 2 cut(s) 363, 1159
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 4 cut(s) 60, 226, 265, 1306
BseGI GGATG 4 cut(s) 16, 22, 1021, 1328
BseLI CCNNNNNNNGG 1 cut(s) 790
BseMI GCAATG 2 cut(s) 363, 1159
BseMII CTCAG 3 cut(s) 484, 600, 1245
BseNI ACTGG 2 cut(s) 111, 928
BseRI GAGGAG 1 cut(s) 1229
BseXI GCAGC 3 cut(s) 109, 451, 1313
BseYI CCCAGC 1 cut(s) 1178
BsgI GTGCAG 2 cut(s) 450, 605
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 332, 895
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 1056
BslFI GGGAC 2 cut(s) 439, 1161
BslI CCNNNNNNNGG 1 cut(s) 790
BsmAI GTCTC 3 cut(s) 751, 1223, 1381
BsmFI GGGAC 2 cut(s) 439, 1161
BsmI GAATGC 1 cut(s) 848
BsnI GGCC 2 cut(s) 332, 895
Bso31I GGTCTC 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 639, 1056
Bsp143I GATC 4 cut(s) 717, 970, 1005, 1111
Bsp1720I GCTNAGC 1 cut(s) 1254
BspACI CCGC 4 cut(s) 60, 62, 99, 869
BspANI GGCC 2 cut(s) 332, 895
BspCNI CTCAG 3 cut(s) 483, 601, 1246
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 1177
BspMI ACCTGC 3 cut(s) 577, 1126, 1163
BspPI GGATC 2 cut(s) 978, 1013
BspQI GCTCTTC 1 cut(s) 495
BspTNI GGTCTC 1 cut(s) 751
BsrDI GCAATG 2 cut(s) 363, 1159
BsrI ACTGG 2 cut(s) 111, 928
BssECI CCNNGG 4 cut(s) 60, 226, 265, 1306
BssMI GATC 4 cut(s) 717, 970, 1005, 1111
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 6 cut(s) 266, 349, 674, 785, 1234, 1373
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 893
BstDEI CTNAG 5 cut(s) 405, 470, 609, 987, 1254
BstDSI CCRYGG 3 cut(s) 60, 265, 1306
BstF5I GGATG 4 cut(s) 16, 22, 1021, 1328
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 4 cut(s) 720, 973, 1008, 1114
BstMAI GTCTC 3 cut(s) 751, 1223, 1381
BstMBI GATC 4 cut(s) 717, 970, 1005, 1111
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 592, 1132, 1298
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 3 cut(s) 832, 1106, 1167
BstPAI GACNNNNGTC 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 568
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 3 cut(s) 109, 451, 1313
BsuRI GGCC 2 cut(s) 332, 895
BtgI CCRYGG 3 cut(s) 60, 265, 1306
BtrI CACGTC 1 cut(s) 1289
BtsCI GGATG 4 cut(s) 16, 22, 1021, 1328
BtsI GCAGTG 3 cut(s) 534, 1097, 1189
BtsIMutI CAGTG 5 cut(s) 354, 534, 670, 1097, 1189
BveI ACCTGC 3 cut(s) 577, 1126, 1163
Cac8I GCNNGC 1 cut(s) 893
CciI TCATGA 1 cut(s) 85
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 1175
Cfr42I CCGCGG 1 cut(s) 63
CseI GACGC 1 cut(s) 200
Csp6I GTAC 5 cut(s) 95, 223, 345, 566, 775
CspCI CAANNNNNGTGG 4 cut(s) 118, 153, 510, 545
CviAII CATG 9 cut(s) 86, 134, 506, 659, 724, 829, 839, 1103, 1164
CviQI GTAC 5 cut(s) 95, 223, 345, 566, 775
DdeI CTNAG 5 cut(s) 405, 470, 609, 987, 1254
DpnI GATC 4 cut(s) 719, 972, 1007, 1113
DpnII GATC 4 cut(s) 717, 970, 1005, 1111
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco147I AGGCCT 1 cut(s) 895
Eco24I GRGCYC 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 1175
Eco57I CTGAAG 1 cut(s) 1062
EcoO109I RGGNCCY 1 cut(s) 1175
EcoRII CCWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 639
FaeI CATG 9 cut(s) 89, 137, 509, 662, 727, 832, 842, 1106, 1167
FalI AAGNNNNNCTT 2 cut(s) 1306, 1338
FaqI GGGAC 2 cut(s) 439, 1161
FatI CATG 9 cut(s) 85, 133, 505, 658, 723, 828, 838, 1102, 1163
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 123, 465, 1302
FokI GGATG 4 cut(s) 23, 29, 1028, 1315
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 3 cut(s) 123, 465, 1302
FspBI CTAG 5 cut(s) 563, 932, 951, 963, 1020
GlaI GCGC 1 cut(s) 126
GluI GCNGC 3 cut(s) 123, 465, 1302
GsaI CCCAGC 1 cut(s) 1182
HaeIII GGCC 2 cut(s) 332, 895
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 9 cut(s) 89, 137, 509, 662, 727, 832, 842, 1106, 1167
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 5 cut(s) 270, 311, 667, 822, 1094
HphI GGTGA 3 cut(s) 601, 712, 1291
Hpy166II GTNNAC 4 cut(s) 262, 874, 960, 1187
Hpy188I TCNGA 5 cut(s) 316, 473, 651, 1027, 1116
Hpy188III TCNNGA 7 cut(s) 86, 608, 932, 974, 1009, 1332, 1384
Hpy8I GTNNAC 4 cut(s) 262, 874, 960, 1187
Hpy99I CGWCG 2 cut(s) 194, 1290
HpyAV CCTTC 5 cut(s) 484, 906, 961, 992, 1006
HpyCH4III ACNGT 6 cut(s) 266, 349, 674, 785, 1234, 1373
HpyCH4IV ACGT 3 cut(s) 221, 1118, 1288
HpyF10VI GCNNNNNNNGC 3 cut(s) 592, 1132, 1298
HpyF3I CTNAG 5 cut(s) 405, 470, 609, 987, 1254
HpySE526I ACGT 3 cut(s) 221, 1118, 1288
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 9 cut(s) 89, 137, 509, 662, 727, 832, 842, 1106, 1167
HspAI GCGC 1 cut(s) 125
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 4 cut(s) 717, 970, 1005, 1111
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 3 cut(s) 109, 451, 1313
LweI GCATC 3 cut(s) 1006, 1240, 1337
MaeI CTAG 5 cut(s) 563, 932, 951, 963, 1020
MaeII ACGT 3 cut(s) 221, 1118, 1288
MaeIII GTNAC 7 cut(s) 536, 558, 674, 1119, 1208, 1234, 1294
MalI GATC 4 cut(s) 719, 972, 1007, 1113
MboI GATC 4 cut(s) 717, 970, 1005, 1111
MboII GAAGA 8 cut(s) 350, 512, 727, 989, 1046, 1055, 1211, 1326
MfeI CAATTG 2 cut(s) 439, 596
MhlI GDGCHC 2 cut(s) 639, 1056
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 8 cut(s) 246, 362, 439, 476, 596, 686, 981, 1391
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 2 cut(s) 279, 320
MmeI TCCRAC 1 cut(s) 283
Mox20I TGGCCA 1 cut(s) 332
MscI TGGCCA 1 cut(s) 332
MseI TTAA 7 cut(s) 56, 249, 419, 690, 804, 1067, 1394
MslI CAYNNNNRTG 2 cut(s) 762, 1061
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 4 cut(s) 62, 101, 851, 869
MspR9I CCNGG 1 cut(s) 570
MunI CAATTG 2 cut(s) 439, 596
Mva1269I GAATGC 1 cut(s) 848
MvaI CCWGG 1 cut(s) 570
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 592, 1132, 1298
NdeII GATC 4 cut(s) 717, 970, 1005, 1111
NlaIII CATG 9 cut(s) 89, 137, 509, 662, 727, 832, 842, 1106, 1167
NlaIV GGNNCC 1 cut(s) 1177
NmuCI GTSAC 2 cut(s) 558, 674
NspI RCATGY 3 cut(s) 832, 1106, 1167
PagI TCATGA 1 cut(s) 85
PaqCI CACCTGC 1 cut(s) 577
PceI AGGCCT 1 cut(s) 895
PciI ACATGT 2 cut(s) 828, 1163
PciSI GCTCTTC 1 cut(s) 495
PctI GAATGC 1 cut(s) 848
PfeI GAWTC 3 cut(s) 667, 822, 1094
PkrI GCNGC 3 cut(s) 124, 466, 1303
PleI GAGTC 2 cut(s) 278, 319
PpsI GAGTC 2 cut(s) 278, 319
PpuMI RGGWCCY 1 cut(s) 1175
PscI ACATGT 2 cut(s) 828, 1163
PshAI GACNNNNGTC 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 1175
Psp6I CCWGG 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 1178
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 1 cut(s) 1177
PspPI GGNCC 1 cut(s) 1175
PspPPI RGGWCCY 1 cut(s) 1175
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 5 cut(s) 96, 224, 346, 567, 776
RsaNI GTAC 5 cut(s) 95, 223, 345, 566, 775
RseI CAYNNNNRTG 2 cut(s) 762, 1061
SacII CCGCGG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 7 cut(s) 56, 249, 419, 690, 804, 1067, 1394
SatI GCNGC 3 cut(s) 123, 465, 1302
Sau3AI GATC 4 cut(s) 717, 970, 1005, 1111
Sau96I GGNCC 1 cut(s) 1175
SchI GAGTC 2 cut(s) 279, 320
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 2 cut(s) 639, 1056
SfaNI GCATC 3 cut(s) 1006, 1240, 1337
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SinI GGWCC 1 cut(s) 1175
SmiMI CAYNNNNRTG 2 cut(s) 762, 1061
SmlI CTYRAG 2 cut(s) 128, 167
SmoI CTYRAG 2 cut(s) 128, 167
SpeI ACTAGT 1 cut(s) 562
Sse9I AATT 8 cut(s) 246, 362, 439, 476, 596, 686, 981, 1391
SseBI AGGCCT 1 cut(s) 895
SsiI CCGC 4 cut(s) 60, 62, 99, 869
SspMI CTAG 5 cut(s) 563, 932, 951, 963, 1020
StuI AGGCCT 1 cut(s) 895
StyD4I CCNGG 1 cut(s) 568
TaaI ACNGT 6 cut(s) 266, 349, 674, 785, 1234, 1373
TaiI ACGT 3 cut(s) 224, 1121, 1291
TaqI TCGA 1 cut(s) 66
TasI AATT 8 cut(s) 246, 362, 439, 476, 596, 686, 981, 1391
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 3 cut(s) 667, 822, 1094
Tru1I TTAA 7 cut(s) 56, 249, 419, 690, 804, 1067, 1394
Tru9I TTAA 7 cut(s) 56, 249, 419, 690, 804, 1067, 1394
TscAI CASTG 5 cut(s) 354, 534, 677, 1104, 1189
TseFI GTSAC 2 cut(s) 558, 674
TseI GCWGC 3 cut(s) 122, 464, 1301
Tsp45I GTSAC 2 cut(s) 558, 674
TspRI CASTG 5 cut(s) 354, 534, 677, 1104, 1189
VpaK11BI GGWCC 1 cut(s) 1175
XapI RAATTY 2 cut(s) 476, 686
XbaI TCTAGA 1 cut(s) 931
XceI RCATGY 3 cut(s) 832, 1106, 1167
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XspI CTAG 5 cut(s) 563, 932, 951, 963, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.