AT3G51580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011413
Physical Location & Seq
Reverse (-)
19130768 .. 19133435
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51580.1

Sequence Viewer

Length: 1173 bp
ATGGATAGAAGTTCGGTCTTAACACTTCTTCTATTGATTTTGTTCATCTCCAATGCTTCCTCCTTCGATAGATTTCGTGAGCTAGTTGATGAAGAAACACAAAAGGATAATTCAAATTCAACCACTAAACAAGAGTCTCCGTTGATTAATCCTCAACCCATCGGAGATGGAAAATCTAATGTGACCTCATCAGAACCAACTCTGCCAACTAGTAATTCGACGAACACTAATCCTAAAGAGCCTGATTCAATGAGTCCACCTCCTCCACTGATACCTGTAAATGAGAAGAATGATACTAAAGTGTTAAATACAACCGAGCCGATGAGCCCGCCTCCGCCTCCAGCGAACCTAACGGATAGTCAGGATAGTGGAAAGCTACCGGCTAACATGGCACCGCCTCCAAAGAGTTTGGAGAGTGGGAAAAATGAGACAGAGCCAGGTAAGGAGAGTCCTCCTTTGGCTAAAGATCCTGCTAAGGGAAAGGATGATAAGGGGAGCTCAGAGTCTGCCAGTGTAGATACCTGTGTAGGAAAGTCTAACATATGTAGAACTGAGAATTCATTGGTGGCGTGCACTTTGAGCATTGATAAAGGTGCTGCTAACTGGTTGATTCTAGTTCAAAATGAAGGTGAAACATCTCTAAAAGCAAAAATTGTTCTTCCGGTTAACGCTTTACAAGAGCTGACACTGCCAAAACACCAGAGTCAAAAAGTAAACATATCCATTAGTGGAGATACAAACAAGATCATACTAGATACTGGAAAAGGACAGTGTGCGCTTCACATGTACCCATCAGAAGAAAGCACCTTACCATTCCACTTTCCCTCATATGAAAAACTAGTGACGCCCATTAACGGCGCTTATTTCTTAATAGTATCCGTCATTATTTTTGGGGGAATTTGGGCATTCTGTCTTTGCCGGAAGAATCGCCGTGCAGGCAGTGGAGTGCCTTACCGTGAGCTAGAATTGAGTGGAGGACCAGGCTTGGAAAACGAGTCAGGGGTCCATGATGTGGAGACAGCAGACTGGGACGAGGGTTGGGATGATGATTGGGATGAGAATAATGCTGTGAAATCGCCGGGTAGTGCAGCAAAGAGTGTTAGCATATCTGCCAATGGCTTAACAGCGAGGGCTCCAAACCGAGATGGCTGGGATCATGACTGGGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

42.02

Weight (kDa)

4.74

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 167 - 264 4e-26 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 1012
AciI CCGC 3 cut(s) 329, 335, 395
AclWI GGATC 2 cut(s) 461, 1161
AcsI RAATTY 3 cut(s) 115, 556, 897
AcyI GRCGYC 1 cut(s) 845
AfaI GTAC 1 cut(s) 788
AfiI CCNNNNNNNGG 3 cut(s) 476, 854, 1012
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 4 cut(s) 114, 120, 249, 620
AhlI ACTAGT 2 cut(s) 209, 838
AjnI CCWGG 2 cut(s) 436, 979
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 5 cut(s) 82, 376, 498, 682, 961
AluI AGCT 5 cut(s) 82, 376, 498, 682, 961
Alw21I GWGCWC 2 cut(s) 500, 575
Alw26I GTCTC 3 cut(s) 141, 422, 1010
Alw44I GTGCAC 1 cut(s) 571
AlwI GGATC 2 cut(s) 461, 1161
AlwNI CAGNNNCTG 1 cut(s) 506
ApaLI GTGCAC 1 cut(s) 571
ApeKI GCWGC 2 cut(s) 596, 1088
ApoI RAATTY 3 cut(s) 115, 556, 897
AseI ATTAAT 1 cut(s) 147
AspLEI GCGC 2 cut(s) 778, 860
AspS9I GGNCC 2 cut(s) 977, 1003
AsuC2I CCSGG 1 cut(s) 1080
AsuHPI GGTGA 1 cut(s) 641
AvaII GGWCC 2 cut(s) 977, 1003
BaeGI GKGCMC 1 cut(s) 575
BaeI ACNNNNGTAYC 4 cut(s) 285, 318, 510, 543
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 3 cut(s) 329, 500, 1135
Bbv12I GWGCWC 2 cut(s) 500, 575
BbvI GCAGC 2 cut(s) 583, 1100
BccI CCATC 4 cut(s) 161, 167, 799, 1139
BceAI ACGGC 2 cut(s) 871, 915
BciT130I CCWGG 2 cut(s) 438, 981
BciVI GTATCC 1 cut(s) 886
BcnI CCSGG 1 cut(s) 1080
BcoDI GTCTC 3 cut(s) 141, 422, 1010
BcuI ACTAGT 2 cut(s) 209, 838
BfaI CTAG 7 cut(s) 83, 210, 614, 752, 839, 962, 1171
BfoI RGCGCY 1 cut(s) 861
BfuI GTATCC 1 cut(s) 886
BglI GCCNNNNNGGC 1 cut(s) 936
BisI GCNGC 2 cut(s) 597, 1089
BlsI GCNGC 2 cut(s) 598, 1090
Bme1390I CCNGG 3 cut(s) 438, 981, 1080
Bme18I GGWCC 2 cut(s) 977, 1003
BmgT120I GGNCC 2 cut(s) 977, 1003
BmiI GGNNCC 3 cut(s) 393, 1004, 1134
BmrFI CCNGG 3 cut(s) 438, 981, 1080
BmrI ACTGGG 2 cut(s) 1036, 1171
BmuI ACTGGG 2 cut(s) 1036, 1171
BplI GAGNNNNNCTC 4 cut(s) 244, 276, 316, 348
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 1080
BsaHI GRCGYC 1 cut(s) 845
BsaWI WCCGGW 1 cut(s) 661
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 854, 1012
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 5 cut(s) 510, 608, 763, 1031, 1166
BseBI CCWGG 2 cut(s) 438, 981
BseGI GGATG 3 cut(s) 490, 1048, 1060
BseLI CCNNNNNNNGG 3 cut(s) 476, 854, 1012
BseMII CTCAG 2 cut(s) 513, 543
BseNI ACTGG 5 cut(s) 510, 608, 763, 1031, 1166
BseRI GAGGAG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 575
BseXI GCAGC 2 cut(s) 583, 1100
BseYI CCCAGC 1 cut(s) 1149
BsgI GTGCAG 2 cut(s) 954, 1107
BshNI GGYRCC 1 cut(s) 391
BsiHKAI GWGCWC 2 cut(s) 500, 575
BsiSI CCGG 4 cut(s) 380, 662, 919, 1079
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 3 cut(s) 476, 854, 1012
BsmAI GTCTC 3 cut(s) 141, 422, 1010
BsmFI GGGAC 1 cut(s) 1043
BsmI GAATGC 1 cut(s) 905
Bsp1286I GDGCHC 4 cut(s) 329, 500, 575, 1135
Bsp143I GATC 3 cut(s) 466, 744, 1153
BspACI CCGC 3 cut(s) 329, 335, 395
BspCNI CTCAG 2 cut(s) 512, 544
BspHI TCATGA 1 cut(s) 1156
BspLI GGNNCC 3 cut(s) 393, 1004, 1134
BspPI GGATC 2 cut(s) 461, 1161
BspT107I GGYRCC 1 cut(s) 391
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 5 cut(s) 510, 608, 763, 1031, 1166
BssAI RCCGGY 1 cut(s) 379
BssMI GATC 3 cut(s) 466, 744, 1153
BssNI GRCGYC 1 cut(s) 845
Bst2UI CCWGG 2 cut(s) 438, 981
Bst4CI ACNGT 2 cut(s) 771, 956
BstACI GRCGYC 1 cut(s) 845
BstC8I GCNNGC 3 cut(s) 329, 571, 937
BstDEI CTNAG 3 cut(s) 474, 499, 552
BstF5I GGATG 3 cut(s) 490, 1048, 1060
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 2 cut(s) 778, 860
BstKTI GATC 3 cut(s) 469, 747, 1156
BstMAI GTCTC 3 cut(s) 141, 422, 1010
BstMBI GATC 3 cut(s) 466, 744, 1153
BstMWI GCNNNNNNNGC 4 cut(s) 389, 579, 688, 936
BstNI CCWGG 2 cut(s) 438, 981
BstNSI RCATGY 1 cut(s) 787
BstSCI CCNGG 3 cut(s) 436, 979, 1078
BstSLI GKGCMC 1 cut(s) 575
BstV1I GCAGC 2 cut(s) 583, 1100
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuI GTATCC 1 cut(s) 886
BtsCI GGATG 3 cut(s) 490, 1048, 1060
BtsI GCAGTG 2 cut(s) 686, 946
BtsIMutI CAGTG 5 cut(s) 266, 517, 686, 776, 946
Cac8I GCNNGC 3 cut(s) 329, 571, 937
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 1156
CfoI GCGC 2 cut(s) 778, 860
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 977, 1003
CseI GACGC 1 cut(s) 853
Csp6I GTAC 1 cut(s) 787
CviAII CATG 4 cut(s) 388, 784, 1007, 1157
CviQI GTAC 1 cut(s) 787
DdeI CTNAG 3 cut(s) 474, 499, 552
DpnI GATC 3 cut(s) 468, 746, 1155
DpnII GATC 3 cut(s) 466, 744, 1153
EciI GGCGGA 1 cut(s) 324
Ecl136II GAGCTC 1 cut(s) 498
Eco24I GRGCYC 3 cut(s) 329, 500, 1135
Eco47I GGWCC 2 cut(s) 977, 1003
Eco53kI GAGCTC 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 436, 979
EcoT38I GRGCYC 3 cut(s) 329, 500, 1135
FaeI CATG 4 cut(s) 391, 787, 1010, 1160
FaqI GGGAC 1 cut(s) 1043
FatI CATG 4 cut(s) 387, 783, 1006, 1156
FauI CCCGC 1 cut(s) 336
FauNDI CATATG 2 cut(s) 542, 829
Fnu4HI GCNGC 2 cut(s) 597, 1089
FokI GGATG 3 cut(s) 497, 1055, 1067
FriOI GRGCYC 3 cut(s) 329, 500, 1135
Fsp4HI GCNGC 2 cut(s) 597, 1089
FspBI CTAG 7 cut(s) 83, 210, 614, 752, 839, 962, 1171
GlaI GCGC 2 cut(s) 777, 859
GluI GCNGC 2 cut(s) 597, 1089
GsaI CCCAGC 1 cut(s) 1153
GsuI CTGGAG 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 861
HapII CCGG 4 cut(s) 380, 662, 919, 1079
HgaI GACGC 1 cut(s) 853
HhaI GCGC 2 cut(s) 778, 860
Hin1I GRCGYC 1 cut(s) 845
Hin1II CATG 4 cut(s) 391, 787, 1010, 1160
Hin6I GCGC 2 cut(s) 776, 858
HinP1I GCGC 2 cut(s) 776, 858
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 9 cut(s) 134, 245, 253, 448, 503, 610, 703, 925, 995
HpaI GTTAAC 1 cut(s) 667
HpaII CCGG 4 cut(s) 380, 662, 919, 1079
HphI GGTGA 1 cut(s) 641
Hpy166II GTNNAC 4 cut(s) 257, 573, 667, 715
Hpy188I TCNGA 4 cut(s) 164, 193, 502, 796
Hpy188III TCNNGA 3 cut(s) 77, 362, 1157
Hpy8I GTNNAC 4 cut(s) 257, 573, 667, 715
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 73, 620
HpyCH4III ACNGT 2 cut(s) 771, 956
HpyCH4V TGCA 3 cut(s) 573, 935, 1088
HpyF10VI GCNNNNNNNGC 4 cut(s) 389, 579, 688, 936
HpyF3I CTNAG 3 cut(s) 474, 499, 552
Hsp92I GRCGYC 1 cut(s) 845
Hsp92II CATG 4 cut(s) 391, 787, 1010, 1160
HspAI GCGC 2 cut(s) 776, 858
KspAI GTTAAC 1 cut(s) 667
Kzo9I GATC 3 cut(s) 466, 744, 1153
LmnI GCTCC 2 cut(s) 495, 1138
Lsp1109I GCAGC 2 cut(s) 583, 1100
MaeI CTAG 7 cut(s) 83, 210, 614, 752, 839, 962, 1171
MaeIII GTNAC 2 cut(s) 181, 841
MalI GATC 3 cut(s) 468, 746, 1155
MboI GATC 3 cut(s) 466, 744, 1153
MboII GAAGA 6 cut(s) 20, 104, 298, 650, 809, 934
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 4 cut(s) 329, 500, 575, 1135
MluCI AATT 7 cut(s) 109, 115, 214, 556, 651, 897, 965
MlyI GAGTC 6 cut(s) 143, 262, 457, 512, 712, 1004
MseI TTAA 7 cut(s) 20, 147, 305, 666, 852, 869, 1121
MspI CCGG 4 cut(s) 380, 662, 919, 1079
MspR9I CCNGG 3 cut(s) 438, 981, 1080
Mva1269I GAATGC 1 cut(s) 905
MvaI CCWGG 2 cut(s) 438, 981
MwoI GCNNNNNNNGC 4 cut(s) 389, 579, 688, 936
NciI CCSGG 1 cut(s) 1080
NdeI CATATG 2 cut(s) 542, 829
NdeII GATC 3 cut(s) 466, 744, 1153
NlaIII CATG 4 cut(s) 391, 787, 1010, 1160
NlaIV GGNNCC 3 cut(s) 393, 1004, 1134
NmuCI GTSAC 2 cut(s) 181, 841
NspI RCATGY 1 cut(s) 787
PagI TCATGA 1 cut(s) 1156
PciI ACATGT 1 cut(s) 783
PctI GAATGC 1 cut(s) 905
PfeI GAWTC 3 cut(s) 245, 610, 925
PflMI CCANNNNNTGG 1 cut(s) 1012
PkrI GCNGC 2 cut(s) 598, 1090
PleI GAGTC 6 cut(s) 142, 261, 456, 511, 711, 1003
PpsI GAGTC 6 cut(s) 142, 261, 456, 511, 711, 1003
PscI ACATGT 1 cut(s) 783
PshBI ATTAAT 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 500
Psp6I CCWGG 2 cut(s) 436, 979
PspFI CCCAGC 1 cut(s) 1149
PspGI CCWGG 2 cut(s) 436, 979
PspN4I GGNNCC 3 cut(s) 393, 1004, 1134
PspPI GGNCC 2 cut(s) 977, 1003
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 1 cut(s) 788
RsaNI GTAC 1 cut(s) 787
SacI GAGCTC 1 cut(s) 500
SaqAI TTAA 7 cut(s) 20, 147, 305, 666, 852, 869, 1121
SatI GCNGC 2 cut(s) 597, 1089
Sau3AI GATC 3 cut(s) 466, 744, 1153
Sau96I GGNCC 2 cut(s) 977, 1003
SchI GAGTC 6 cut(s) 143, 262, 457, 512, 712, 1004
ScrFI CCNGG 3 cut(s) 438, 981, 1080
SduI GDGCHC 4 cut(s) 329, 500, 575, 1135
SinI GGWCC 2 cut(s) 977, 1003
SpeI ACTAGT 2 cut(s) 209, 838
Sse9I AATT 7 cut(s) 109, 115, 214, 556, 651, 897, 965
SsiI CCGC 3 cut(s) 329, 335, 395
SspMI CTAG 7 cut(s) 83, 210, 614, 752, 839, 962, 1171
SstI GAGCTC 1 cut(s) 500
StyD4I CCNGG 3 cut(s) 436, 979, 1078
TaaI ACNGT 2 cut(s) 771, 956
TaqI TCGA 2 cut(s) 66, 218
TaqII GACCGA 1 cut(s) 4
TasI AATT 7 cut(s) 109, 115, 214, 556, 651, 897, 965
TfiI GAWTC 3 cut(s) 245, 610, 925
Tru1I TTAA 7 cut(s) 20, 147, 305, 666, 852, 869, 1121
Tru9I TTAA 7 cut(s) 20, 147, 305, 666, 852, 869, 1121
TscAI CASTG 5 cut(s) 273, 517, 693, 776, 946
TseFI GTSAC 2 cut(s) 181, 841
TseI GCWGC 2 cut(s) 596, 1088
Tsp45I GTSAC 2 cut(s) 181, 841
TspDTI ATGAA 5 cut(s) 34, 105, 549, 639, 846
TspGWI ACGGA 3 cut(s) 129, 368, 868
TspRI CASTG 5 cut(s) 273, 517, 693, 776, 946
Van91I CCANNNNNTGG 1 cut(s) 1012
VneI GTGCAC 1 cut(s) 571
VpaK11BI GGWCC 2 cut(s) 977, 1003
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 3 cut(s) 115, 556, 897
XceI RCATGY 1 cut(s) 787
XspI CTAG 7 cut(s) 83, 210, 614, 752, 839, 962, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.