Rmu_sc0004267.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004267.1
OG0011413
Physical Location & Seq
Forward (+)
40399 .. 43372
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004267.1_g000009.1.cds

Sequence Viewer

Length: 1269 bp
atggattcggatcgcaattccagtcgaactagttttctggcggtgttcttattgctcttcatcgtttccgatgtcaccaatgcttcgatgctcaccaagcatagatttttgatcggtgatcctccgaagggcaatttggacaatcccacattaccgggtaaggattctccggtggtgagtccacctccgccttctaaacctgatcctgatcctgatcctaatcctaatcctaagccagttgatgatgggaagaagaaaacgggctctgccccaccctccaagacgccggagccgaaaggttcaaataacagtactaaaccggctccggtaggtccaccaactgataccggtggtgggaagaataaccaaacacagaagcaggatccaaatcctgtgcagaagccgaaggagaaaccaactccagagcctgaacagaagccgaaggagaatccaactccagagcctgaacagaagccgaaggagaatccaactctggagtctgagcagaggccgaaggagaatccaactccagagactggcaagacaccggaagaggatccaagtgcaaagactccagaaatagagaagactaagaataaaagtgacaatgtgactaatacatcgaatgtgaaaaaagaaagctgcgatggggcaatcaagaagtgcagcaatacggatatggttgcctgcattaagagcttcaatagggaatcaacagaagcagtcattctggtccaaaatgtaggtgacagcacattgaacggaaacctttctgcagaagataccagggacctggtgatacccaaacacgaatataaaaagatcaagctccatatgggtaaaagcaacaaaatagtactgaaagctggaaatggagaatgcgtgctggacccttttgtatctgaaggaaactttttcatgcgtttcccttcttatgagaagttagtgacgccaatcaatggtgcatacttcttgattgttacagtgctaatttttggagggatgtgggtttgctgcctggttaggaggaggaaacagcgcactggaggtggagttccttatcaggaacttgaaatggcattgccggaatcggcttcagcaactgatgtggttacggcagaaggttgggatcagggttgggatgacgattgggatggagataatgcagtgaagtcacctggagggcatctggtgggaagcatatctgctaatggtcttactgcaaggtctttgaacaaagatgggtgggaaaataactgggatgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

422

Amino Acids

45.88

Weight (kDa)

5.56

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 536, 959
AciI CCGC 2 cut(s) 41, 188
AcuI CTGAAG 2 cut(s) 924, 1080
AcyI GRCGYC 2 cut(s) 284, 950
AfaI GTAC 2 cut(s) 313, 858
AfiI CCNNNNNNNGG 4 cut(s) 128, 354, 536, 959
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 5 cut(s) 303, 703, 760, 1073, 1234
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 4 cut(s) 785, 792, 1017, 1177
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AloI GAACNNNNNNTCC 2 cut(s) 1038, 1070
AluBI AGCT 4 cut(s) 642, 699, 829, 866
AluI AGCT 4 cut(s) 642, 699, 829, 866
Alw26I GTCTC 1 cut(s) 527
AlwNI CAGNNNCTG 4 cut(s) 428, 464, 536, 1103
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 3 cut(s) 642, 666, 1014
AsiGI ACCGGT 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 769
AspLEI GCGC 1 cut(s) 1041
AspS9I GGNCC 4 cut(s) 332, 733, 790, 889
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 7 cut(s) 67, 85, 128, 187, 758, 808, 1167
AvaII GGWCC 4 cut(s) 332, 733, 790, 889
BamHI GGATCC 2 cut(s) 382, 556
BanII GRGCYC 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 593
BbvI GCAGC 3 cut(s) 629, 678, 1001
BccI CCATC 4 cut(s) 239, 641, 1148, 1235
BceAI ACGGC 1 cut(s) 1131
BciT130I CCWGG 4 cut(s) 787, 794, 1019, 1179
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 527
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 774
BisI GCNGC 3 cut(s) 643, 667, 1015
BlsI GCNGC 3 cut(s) 644, 668, 1016
BmcAI AGTACT 2 cut(s) 313, 858
Bme1390I CCNGG 5 cut(s) 156, 787, 794, 1019, 1179
Bme18I GGWCC 4 cut(s) 332, 733, 790, 889
BmgT120I GGNCC 4 cut(s) 332, 733, 790, 889
BmiI GGNNCC 6 cut(s) 291, 324, 384, 558, 791, 891
BmrFI CCNGG 5 cut(s) 156, 787, 794, 1019, 1179
BmrI ACTGGG 1 cut(s) 1267
BmsI GCATC 2 cut(s) 78, 1195
BmuI ACTGGG 1 cut(s) 1267
BpiI GAAGAC 1 cut(s) 593
BplI GAGNNNNNCTC 2 cut(s) 169, 201
BpmI CTGGAG 7 cut(s) 405, 441, 513, 515, 558, 1065, 1200
Bpu10I CCTNAGC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 156
BsaBI GATNNNNATC 5 cut(s) 9, 207, 213, 219, 387
BsaHI GRCGYC 2 cut(s) 284, 950
BsaJI CCNNGG 1 cut(s) 786
BsaWI WCCGGW 4 cut(s) 169, 325, 347, 547
BsaXI ACNNNNNCTCC 4 cut(s) 867, 897, 1038, 1068
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 354, 536, 959
Bse118I RCCGGY 2 cut(s) 319, 347
Bse1I ACTGG 5 cut(s) 21, 236, 541, 1048, 1262
Bse3DI GCAATG 1 cut(s) 1079
Bse8I GATNNNNATC 5 cut(s) 9, 207, 213, 219, 387
BseBI CCWGG 4 cut(s) 787, 794, 1019, 1179
BseDI CCNNGG 1 cut(s) 786
BseGI GGATG 4 cut(s) 1008, 1147, 1159, 1267
BseJI GATNNNNATC 5 cut(s) 9, 207, 213, 219, 387
BseLI CCNNNNNNNGG 4 cut(s) 128, 354, 536, 959
BseMI GCAATG 1 cut(s) 1079
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 5 cut(s) 21, 236, 541, 1048, 1262
BseRI GAGGAG 1 cut(s) 1042
BseXI GCAGC 3 cut(s) 629, 678, 1001
BsgI GTGCAG 2 cut(s) 416, 685
BshFI GGCC 1 cut(s) 511
BshTI ACCGGT 1 cut(s) 347
BsiSI CCGG 8 cut(s) 155, 170, 287, 320, 326, 348, 548, 1085
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 4 cut(s) 128, 354, 536, 959
BsmAI GTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 884
BsnI GGCC 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 266
BspACI CCGC 2 cut(s) 41, 188
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 1 cut(s) 493
BspLI GGNNCC 6 cut(s) 291, 324, 384, 558, 791, 891
BspMAI CTGCAG 1 cut(s) 778
BspQI GCTCTTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 1079
BsrFI RCCGGY 2 cut(s) 319, 347
BsrI ACTGG 5 cut(s) 21, 236, 541, 1048, 1262
BssAI RCCGGY 2 cut(s) 319, 347
BssECI CCNNGG 1 cut(s) 786
BssNI GRCGYC 2 cut(s) 284, 950
Bst2UI CCWGG 4 cut(s) 787, 794, 1019, 1179
Bst4CI ACNGT 2 cut(s) 311, 985
Bst6I CTCTTC 2 cut(s) 62, 546
BstACI GRCGYC 2 cut(s) 284, 950
BstC8I GCNNGC 2 cut(s) 688, 884
BstDEI CTNAG 3 cut(s) 231, 501, 591
BstF5I GGATG 4 cut(s) 1008, 1147, 1159, 1267
BstHHI GCGC 1 cut(s) 1041
BstMAI GTCTC 1 cut(s) 527
BstMWI GCNNNNNNNGC 2 cut(s) 97, 696
BstNI CCWGG 4 cut(s) 787, 794, 1019, 1179
BstSCI CCNGG 5 cut(s) 154, 785, 792, 1017, 1177
BstSFI CTRYAG 1 cut(s) 774
BstV1I GCAGC 3 cut(s) 629, 678, 1001
BstV2I GAAGAC 1 cut(s) 593
BstX2I RGATCY 2 cut(s) 382, 556
BstXI CCANNNNNNTGG 1 cut(s) 793
BstYI RGATCY 2 cut(s) 382, 556
BsuRI GGCC 1 cut(s) 511
BtgZI GCGATG 1 cut(s) 660
BtsCI GGATG 4 cut(s) 1008, 1147, 1159, 1267
BtsI GCAGTG 1 cut(s) 1173
BtsIMutI CAGTG 3 cut(s) 990, 1041, 1173
Cac8I GCNNGC 2 cut(s) 688, 884
CaiI CAGNNNCTG 4 cut(s) 428, 464, 536, 1103
CfoI GCGC 1 cut(s) 1041
Cfr10I RCCGGY 2 cut(s) 319, 347
Cfr13I GGNCC 4 cut(s) 332, 733, 790, 889
CseI GACGC 2 cut(s) 292, 958
CsiI ACCWGGT 1 cut(s) 792
Csp6I GTAC 2 cut(s) 312, 857
CspAI ACCGGT 1 cut(s) 347
CspCI CAANNNNNGTGG 2 cut(s) 1089, 1124
CviAII CATG 1 cut(s) 919
CviQI GTAC 2 cut(s) 312, 857
DdeI CTNAG 3 cut(s) 231, 501, 591
Eam1104I CTCTTC 2 cut(s) 62, 546
EarI CTCTTC 2 cut(s) 62, 546
EciI GGCGGA 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 266
Eco47I GGWCC 4 cut(s) 332, 733, 790, 889
Eco57I CTGAAG 2 cut(s) 924, 1080
EcoO109I RGGNCCY 1 cut(s) 790
EcoRII CCWGG 4 cut(s) 785, 792, 1017, 1177
EcoT38I GRGCYC 1 cut(s) 266
FaeI CATG 1 cut(s) 922
FaiI YATR 9 cut(s) 102, 680, 816, 834, 836, 920, 936, 967, 1202
FaqI GGGAC 1 cut(s) 803
FatI CATG 1 cut(s) 918
FauNDI CATATG 1 cut(s) 834
Fnu4HI GCNGC 3 cut(s) 643, 667, 1015
FokI GGATG 3 cut(s) 1015, 1154, 1166
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 3 cut(s) 643, 667, 1015
FspBI CTAG 1 cut(s) 30
GlaI GCGC 1 cut(s) 1040
GluI GCNGC 3 cut(s) 643, 667, 1015
GsuI CTGGAG 7 cut(s) 405, 441, 513, 515, 558, 1065, 1200
HaeIII GGCC 1 cut(s) 511
HapII CCGG 8 cut(s) 155, 170, 287, 320, 326, 348, 548, 1085
HgaI GACGC 2 cut(s) 292, 958
HhaI GCGC 1 cut(s) 1041
Hin1I GRCGYC 2 cut(s) 284, 950
Hin1II CATG 1 cut(s) 922
Hin6I GCGC 1 cut(s) 1039
HinP1I GCGC 1 cut(s) 1039
HpaII CCGG 8 cut(s) 155, 170, 287, 320, 326, 348, 548, 1085
HphI GGTGA 7 cut(s) 67, 85, 128, 187, 758, 808, 1167
Hpy166II GTNNAC 2 cut(s) 182, 335
Hpy188I TCNGA 5 cut(s) 10, 70, 126, 502, 904
Hpy8I GTNNAC 2 cut(s) 182, 335
HpyAV CCTTC 9 cut(s) 121, 201, 400, 436, 472, 508, 899, 939, 1115
HpyCH4III ACNGT 2 cut(s) 311, 985
HpyCH4V TGCA 8 cut(s) 397, 566, 666, 690, 776, 965, 1166, 1223
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 696
HpyF3I CTNAG 3 cut(s) 231, 501, 591
Hsp92I GRCGYC 2 cut(s) 284, 950
Hsp92II CATG 1 cut(s) 922
HspAI GCGC 1 cut(s) 1039
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 3 cut(s) 289, 328, 834
Lsp1109I GCAGC 3 cut(s) 629, 678, 1001
LweI GCATC 2 cut(s) 78, 1195
MabI ACCWGGT 1 cut(s) 792
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 8 cut(s) 73, 602, 610, 746, 946, 979, 1111, 1173
MboII GAAGA 7 cut(s) 49, 262, 265, 370, 563, 598, 791
MflI RGATCY 2 cut(s) 382, 556
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 3 cut(s) 16, 133, 990
MlyI GAGTC 3 cut(s) 187, 506, 565
MmeI TCCRAC 3 cut(s) 476, 512, 548
MroXI GAANNNNTTC 1 cut(s) 769
MseI TTAA 1 cut(s) 693
MspI CCGG 8 cut(s) 155, 170, 287, 320, 326, 348, 548, 1085
MspR9I CCNGG 5 cut(s) 156, 787, 794, 1019, 1179
Mva1269I GAATGC 1 cut(s) 884
MvaI CCWGG 4 cut(s) 787, 794, 1019, 1179
MwoI GCNNNNNNNGC 2 cut(s) 97, 696
NciI CCSGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 834
NlaIII CATG 1 cut(s) 922
NlaIV GGNNCC 6 cut(s) 291, 324, 384, 558, 791, 891
NmuCI GTSAC 6 cut(s) 73, 602, 610, 746, 946, 1173
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PctI GAATGC 1 cut(s) 884
PdmI GAANNNNTTC 1 cut(s) 769
PfeI GAWTC 7 cut(s) 5, 164, 448, 484, 520, 710, 1088
PflMI CCANNNNNTGG 2 cut(s) 536, 959
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 3 cut(s) 644, 668, 1016
PleI GAGTC 3 cut(s) 186, 505, 565
PpsI GAGTC 3 cut(s) 186, 505, 565
PpuMI RGGWCCY 1 cut(s) 790
Psp5II RGGWCCY 1 cut(s) 790
Psp6I CCWGG 4 cut(s) 785, 792, 1017, 1177
PspGI CCWGG 4 cut(s) 785, 792, 1017, 1177
PspN4I GGNNCC 6 cut(s) 291, 324, 384, 558, 791, 891
PspPI GGNCC 4 cut(s) 332, 733, 790, 889
PspPPI RGGWCCY 1 cut(s) 790
PstI CTGCAG 1 cut(s) 778
PstNI CAGNNNCTG 4 cut(s) 428, 464, 536, 1103
PsuI RGATCY 2 cut(s) 382, 556
RsaI GTAC 2 cut(s) 313, 858
RsaNI GTAC 2 cut(s) 312, 857
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 3 cut(s) 643, 667, 1015
Sau96I GGNCC 4 cut(s) 332, 733, 790, 889
ScaI AGTACT 2 cut(s) 313, 858
SchI GAGTC 3 cut(s) 187, 506, 565
ScrFI CCNGG 5 cut(s) 156, 787, 794, 1019, 1179
SduI GDGCHC 1 cut(s) 266
SexAI ACCWGGT 1 cut(s) 792
SfaNI GCATC 2 cut(s) 78, 1195
SfcI CTRYAG 1 cut(s) 774
SinI GGWCC 4 cut(s) 332, 733, 790, 889
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 3 cut(s) 16, 133, 990
SsiI CCGC 2 cut(s) 41, 188
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 5 cut(s) 154, 785, 792, 1017, 1177
TaaI ACNGT 2 cut(s) 311, 985
TaqI TCGA 3 cut(s) 25, 86, 623
TasI AATT 3 cut(s) 16, 133, 990
TatI WGTACW 2 cut(s) 311, 856
TfiI GAWTC 7 cut(s) 5, 164, 448, 484, 520, 710, 1088
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 3 cut(s) 990, 1048, 1173
TseFI GTSAC 6 cut(s) 73, 602, 610, 746, 946, 1173
TseI GCWGC 3 cut(s) 642, 666, 1014
Tsp45I GTSAC 6 cut(s) 73, 602, 610, 746, 946, 1173
TspDTI ATGAA 2 cut(s) 49, 907
TspGWI ACGGA 2 cut(s) 689, 777
TspRI CASTG 3 cut(s) 990, 1048, 1173
Van91I CCANNNNNTGG 2 cut(s) 536, 959
VpaK11BI GGWCC 4 cut(s) 332, 733, 790, 889
XmnI GAANNNNTTC 1 cut(s) 769
XspI CTAG 1 cut(s) 30
ZrmI AGTACT 2 cut(s) 313, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.