Rroxscaffold_6G00419470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011413
Physical Location & Seq
Forward (+)
40932662 .. 40937194
4533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419470.1

Sequence Viewer

Length: 1344 bp
ATGGACAGAACTAGTTTTCTGGCGGTGCTCTTATTGCTCTTCATCGTCTCCGATGTTTCCAATGCTTCGATGCTCACCAAGCATAGATTTTTGATCGGTAATCCTCCGAAGGGCAATTCGGACAATCCCACATTACCGGGTAAGGATTCTCCGGTGGCGAGTCCACCTCCGCCTTCTAAACCTGATCCTGATCCTAATCCTAATCCTAAGCCAGTTGATGATGGGAAGAACAAAACGGGCTCTGCCCGACCCGCCAAGACGCTGAAGACGCCGGACCCGAATCCGGAGCCGAAAGGTTCAAATAACAGTACTAAACCGGCTCCGGTAGATCCACCAAATGATACCGGTGGTGGGAAGAATAACCAAACACAGAAGCAGGATCCAAATCCTGAGCAGAAGCCGAAGGAGAAACCAACTCCAGAGCCTGAAAACAAGCCAAAGGAGAAACCAACTCCAGAGCCTGAACAGAAGCCGAAGGAGAATCCAACTCCAGAGCCTGAGCAGAAGCCGAAGGAGGATCCAACTCCAGAGCCTGAGCTAAAGCCGAAGGAGAATCCAACTCCAGAGTCTGAGCAGAAGCCGAAGGAGAATCCAACTCCAGAGCCTGGCAAGACACGGGAAGAGGATCCAAGTGCAAAGACTCCAGAAATAGAGAAGACTAAGAATAAAAGTGACAATGTGGCTAATACACCGAATGTGAAAAAAGAAAGCTGCGATGGGGCAATCAAGACGTGCAGCAGTACGGATATGATTGCCTGCATTAAGAGCTTCAATAGGGAATCAACAGAAGCAATCATTCTGGTCCAAAATGTACGCGACAGCACATTGAACGGAAGCCTTTCTGCAGAAGATACCAGGAACCTGGTGATACCAAAACACGAATATAAAGAGATCAAGCTCAATATGGGTAAAAGCAACAAAATAGTACTAAAAGCTGGAAATGGAGAATGCACTATTGAGATGGACCCTTCTGTATCTGAAGGAAACTTTTTCGTGCGTTTCCCTTCTTATGAGAAGTTAGTGACGCCAATCAATGGTGCATACTTCTTGATTGTTACAGTGCTAATTTTTGGAGGGATGTGGGTTTGCTGCCTGGTTAGGAGGAGGAAACAGCGCACTGGAGGTGGAGTTCCTTATCAGGAACTTGAAATGGCATTGCCGGAATCGGTTTCAGCAACTGATGTGGTTACGGCGGAAGGTTGGGATCAGGGTTGGGATGACGATTGGGATGGAGATAATGCAGTGAAGTCACCTGGAGGGCATCTGGTGGGAAGCATATCTGCTAATGGTCTTACTGCAAGGTCTTTGAACAAAGATGGGTGGGAAAATAACTGGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

447

Amino Acids

48.76

Weight (kDa)

5.29

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 232 - 324 8.7e-20 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 605, 1034
AccII CGCG 1 cut(s) 816
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 4 cut(s) 23, 170, 252, 1193
AcuI CTGAAG 2 cut(s) 284, 999
AcyI GRCGYC 2 cut(s) 269, 1025
AfaI GTAC 4 cut(s) 310, 742, 813, 927
AfiI CCNNNNNNNGG 5 cut(s) 110, 283, 351, 605, 1034
AgeI ACCGGT 1 cut(s) 344
AgsI TTSAA 5 cut(s) 300, 772, 829, 1148, 1309
AhlI ACTAGT 1 cut(s) 11
AjiI CACGTC 1 cut(s) 732
AjnI CCWGG 5 cut(s) 604, 854, 861, 1092, 1252
AloI GAACNNNNNNTCC 2 cut(s) 1113, 1145
AluBI AGCT 5 cut(s) 538, 711, 768, 898, 935
AluI AGCT 5 cut(s) 538, 711, 768, 898, 935
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 52
AlwNI CAGNNNCTG 7 cut(s) 425, 461, 497, 533, 569, 605, 1178
Aor13HI TCCGGA 1 cut(s) 283
ApeKI GCWGC 3 cut(s) 711, 735, 1089
AsiGI ACCGGT 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 838
AspLEI GCGC 1 cut(s) 1116
AspS9I GGNCC 3 cut(s) 274, 802, 964
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 67, 877, 1242
AvaII GGWCC 3 cut(s) 274, 802, 964
BamHI GGATCC 3 cut(s) 379, 517, 625
BanII GRGCYC 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 272, 662
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 3 cut(s) 698, 747, 1076
BccI CCATC 5 cut(s) 215, 710, 955, 1223, 1310
BceAI ACGGC 1 cut(s) 1206
BciT130I CCWGG 5 cut(s) 606, 856, 863, 1094, 1254
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 52
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 843
BisI GCNGC 3 cut(s) 712, 736, 1090
BlsI GCNGC 3 cut(s) 713, 737, 1091
BmcAI AGTACT 2 cut(s) 310, 927
Bme1390I CCNGG 6 cut(s) 138, 606, 856, 863, 1094, 1254
Bme18I GGWCC 3 cut(s) 274, 802, 964
BmgBI CACGTC 1 cut(s) 732
BmgT120I GGNCC 3 cut(s) 274, 802, 964
BmiI GGNNCC 8 cut(s) 276, 288, 321, 381, 519, 627, 860, 966
BmrFI CCNGG 6 cut(s) 138, 606, 856, 863, 1094, 1254
BmrI ACTGGG 1 cut(s) 1342
BmsI GCATC 2 cut(s) 60, 1270
BmuI ACTGGG 1 cut(s) 1342
BpiI GAAGAC 2 cut(s) 272, 662
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpmI CTGGAG 9 cut(s) 402, 438, 474, 510, 546, 582, 627, 1140, 1275
Bpu10I CCTNAGC 4 cut(s) 207, 390, 498, 534
BpuMI CCSGG 1 cut(s) 138
BsaBI GATNNNNATC 3 cut(s) 189, 195, 384
BsaHI GRCGYC 2 cut(s) 269, 1025
BsaWI WCCGGW 4 cut(s) 151, 283, 322, 344
BsaXI ACNNNNNCTCC 2 cut(s) 1113, 1143
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 283, 351, 605, 1034
Bse118I RCCGGY 2 cut(s) 316, 344
Bse1I ACTGG 3 cut(s) 212, 1123, 1337
Bse3DI GCAATG 1 cut(s) 1154
Bse8I GATNNNNATC 3 cut(s) 189, 195, 384
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 5 cut(s) 606, 856, 863, 1094, 1254
BseGI GGATG 4 cut(s) 1083, 1222, 1234, 1342
BseJI GATNNNNATC 3 cut(s) 189, 195, 384
BseLI CCNNNNNNNGG 5 cut(s) 110, 283, 351, 605, 1034
BseMI GCAATG 1 cut(s) 1154
BseMII CTCAG 4 cut(s) 381, 489, 525, 561
BseNI ACTGG 3 cut(s) 212, 1123, 1337
BseRI GAGGAG 1 cut(s) 1117
BseXI GCAGC 3 cut(s) 698, 747, 1076
BsgI GTGCAG 1 cut(s) 754
Bsh1236I CGCG 1 cut(s) 816
BshTI ACCGGT 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 8 cut(s) 137, 152, 272, 284, 317, 323, 345, 1160
BslI CCNNNNNNNGG 5 cut(s) 110, 283, 351, 605, 1034
BsmAI GTCTC 1 cut(s) 52
BsmBI CGTCTC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 953
Bsp1286I GDGCHC 2 cut(s) 30, 242
Bsp13I TCCGGA 1 cut(s) 283
Bsp143I GATC 9 cut(s) 93, 184, 190, 328, 379, 517, 625, 891, 1204
BspACI CCGC 4 cut(s) 23, 170, 252, 1193
BspCNI CTCAG 4 cut(s) 382, 490, 526, 562
BspEI TCCGGA 1 cut(s) 283
BspFNI CGCG 1 cut(s) 816
BspLI GGNNCC 8 cut(s) 276, 288, 321, 381, 519, 627, 860, 966
BspMAI CTGCAG 1 cut(s) 847
BspQI GCTCTTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 1154
BsrFI RCCGGY 2 cut(s) 316, 344
BsrI ACTGG 3 cut(s) 212, 1123, 1337
BssAI RCCGGY 2 cut(s) 316, 344
BssMI GATC 9 cut(s) 93, 184, 190, 328, 379, 517, 625, 891, 1204
BssNI GRCGYC 2 cut(s) 269, 1025
Bst2UI CCWGG 5 cut(s) 606, 856, 863, 1094, 1254
Bst4CI ACNGT 2 cut(s) 308, 1060
Bst6I CTCTTC 2 cut(s) 44, 615
BstACI GRCGYC 2 cut(s) 269, 1025
BstC8I GCNNGC 1 cut(s) 757
BstDEI CTNAG 6 cut(s) 207, 390, 498, 534, 570, 660
BstF5I GGATG 4 cut(s) 1083, 1222, 1234, 1342
BstFNI CGCG 1 cut(s) 816
BstHHI GCGC 1 cut(s) 1116
BstKTI GATC 9 cut(s) 96, 187, 193, 331, 382, 520, 628, 894, 1207
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 9 cut(s) 93, 184, 190, 328, 379, 517, 625, 891, 1204
BstMWI GCNNNNNNNGC 5 cut(s) 34, 79, 251, 268, 765
BstNI CCWGG 5 cut(s) 606, 856, 863, 1094, 1254
BstSCI CCNGG 6 cut(s) 136, 604, 854, 861, 1092, 1252
BstSFI CTRYAG 1 cut(s) 843
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 3 cut(s) 698, 747, 1076
BstV2I GAAGAC 2 cut(s) 272, 662
BstX2I RGATCY 4 cut(s) 328, 379, 517, 625
BstXI CCANNNNNNTGG 1 cut(s) 862
BstYI RGATCY 4 cut(s) 328, 379, 517, 625
BtgZI GCGATG 1 cut(s) 729
BtrI CACGTC 1 cut(s) 732
BtsCI GGATG 4 cut(s) 1083, 1222, 1234, 1342
BtsI GCAGTG 1 cut(s) 1248
BtsIMutI CAGTG 3 cut(s) 1065, 1116, 1248
Cac8I GCNNGC 1 cut(s) 757
CaiI CAGNNNCTG 7 cut(s) 425, 461, 497, 533, 569, 605, 1178
CfoI GCGC 1 cut(s) 1116
Cfr10I RCCGGY 2 cut(s) 316, 344
Cfr13I GGNCC 3 cut(s) 274, 802, 964
CseI GACGC 3 cut(s) 268, 277, 1033
CsiI ACCWGGT 1 cut(s) 861
Csp6I GTAC 4 cut(s) 309, 741, 812, 926
CspAI ACCGGT 1 cut(s) 344
CspCI CAANNNNNGTGG 2 cut(s) 1164, 1199
CviQI GTAC 4 cut(s) 309, 741, 812, 926
DdeI CTNAG 6 cut(s) 207, 390, 498, 534, 570, 660
DpnI GATC 9 cut(s) 95, 186, 192, 330, 381, 519, 627, 893, 1206
DpnII GATC 9 cut(s) 93, 184, 190, 328, 379, 517, 625, 891, 1204
Eam1104I CTCTTC 2 cut(s) 44, 615
EarI CTCTTC 2 cut(s) 44, 615
EciI GGCGGA 2 cut(s) 159, 1208
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 3 cut(s) 274, 802, 964
Eco57I CTGAAG 2 cut(s) 284, 999
EcoRII CCWGG 5 cut(s) 604, 854, 861, 1092, 1252
EcoT38I GRGCYC 1 cut(s) 242
Esp3I CGTCTC 1 cut(s) 52
FaiI YATR 7 cut(s) 84, 749, 885, 905, 1011, 1042, 1277
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 712, 736, 1090
FokI GGATG 3 cut(s) 1090, 1229, 1241
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 712, 736, 1090
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 1115
GluI GCNGC 3 cut(s) 712, 736, 1090
GsuI CTGGAG 9 cut(s) 402, 438, 474, 510, 546, 582, 627, 1140, 1275
HapII CCGG 8 cut(s) 137, 152, 272, 284, 317, 323, 345, 1160
HgaI GACGC 3 cut(s) 268, 277, 1033
HhaI GCGC 1 cut(s) 1116
Hin1I GRCGYC 2 cut(s) 269, 1025
Hin6I GCGC 1 cut(s) 1114
HinP1I GCGC 1 cut(s) 1114
HpaII CCGG 8 cut(s) 137, 152, 272, 284, 317, 323, 345, 1160
HphI GGTGA 3 cut(s) 67, 877, 1242
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 5 cut(s) 52, 108, 121, 571, 979
Hpy8I GTNNAC 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 308, 1060
HpyCH4IV ACGT 1 cut(s) 731
HpyCH4V TGCA 8 cut(s) 635, 735, 759, 845, 951, 1040, 1241, 1298
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 79, 251, 268, 765
HpyF3I CTNAG 6 cut(s) 207, 390, 498, 534, 570, 660
HpySE526I ACGT 1 cut(s) 731
Hsp92I GRCGYC 2 cut(s) 269, 1025
HspAI GCGC 1 cut(s) 1114
Kpn2I TCCGGA 1 cut(s) 283
Kzo9I GATC 9 cut(s) 93, 184, 190, 328, 379, 517, 625, 891, 1204
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 2 cut(s) 286, 325
Lsp1109I GCAGC 3 cut(s) 698, 747, 1076
LweI GCATC 2 cut(s) 60, 1270
MabI ACCWGGT 1 cut(s) 861
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 731
MaeIII GTNAC 5 cut(s) 671, 1021, 1054, 1186, 1248
MalI GATC 9 cut(s) 95, 186, 192, 330, 381, 519, 627, 893, 1206
MboI GATC 9 cut(s) 93, 184, 190, 328, 379, 517, 625, 891, 1204
MboII GAAGA 7 cut(s) 31, 238, 277, 367, 632, 667, 860
MflI RGATCY 4 cut(s) 328, 379, 517, 625
MhlI GDGCHC 2 cut(s) 30, 242
MluCI AATT 2 cut(s) 115, 1065
MlyI GAGTC 3 cut(s) 169, 575, 634
MmeI TCCRAC 4 cut(s) 509, 545, 581, 617
MnlI CCTC 9 cut(s) 114, 177, 508, 616, 1067, 1095, 1098, 1115, 1250
MroI TCCGGA 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 838
MseI TTAA 1 cut(s) 762
MspI CCGG 8 cut(s) 137, 152, 272, 284, 317, 323, 345, 1160
MspR9I CCNGG 6 cut(s) 138, 606, 856, 863, 1094, 1254
Mva1269I GAATGC 1 cut(s) 953
MvaI CCWGG 5 cut(s) 606, 856, 863, 1094, 1254
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 5 cut(s) 34, 79, 251, 268, 765
NciI CCSGG 1 cut(s) 138
NdeII GATC 9 cut(s) 93, 184, 190, 328, 379, 517, 625, 891, 1204
NlaIV GGNNCC 8 cut(s) 276, 288, 321, 381, 519, 627, 860, 966
NmuCI GTSAC 3 cut(s) 671, 1021, 1248
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PctI GAATGC 1 cut(s) 953
PdmI GAANNNNTTC 1 cut(s) 838
PfeI GAWTC 7 cut(s) 146, 280, 481, 553, 589, 779, 1163
PflMI CCANNNNNTGG 2 cut(s) 605, 1034
PinAI ACCGGT 1 cut(s) 344
PkrI GCNGC 3 cut(s) 713, 737, 1091
PleI GAGTC 3 cut(s) 168, 574, 634
PpsI GAGTC 3 cut(s) 168, 574, 634
Psp6I CCWGG 5 cut(s) 604, 854, 861, 1092, 1252
PspGI CCWGG 5 cut(s) 604, 854, 861, 1092, 1252
PspN4I GGNNCC 8 cut(s) 276, 288, 321, 381, 519, 627, 860, 966
PspPI GGNCC 3 cut(s) 274, 802, 964
PstI CTGCAG 1 cut(s) 847
PstNI CAGNNNCTG 7 cut(s) 425, 461, 497, 533, 569, 605, 1178
PsuI RGATCY 4 cut(s) 328, 379, 517, 625
RsaI GTAC 4 cut(s) 310, 742, 813, 927
RsaNI GTAC 4 cut(s) 309, 741, 812, 926
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 762
SatI GCNGC 3 cut(s) 712, 736, 1090
Sau3AI GATC 9 cut(s) 93, 184, 190, 328, 379, 517, 625, 891, 1204
Sau96I GGNCC 3 cut(s) 274, 802, 964
ScaI AGTACT 2 cut(s) 310, 927
SchI GAGTC 3 cut(s) 169, 575, 634
ScrFI CCNGG 6 cut(s) 138, 606, 856, 863, 1094, 1254
SduI GDGCHC 2 cut(s) 30, 242
SexAI ACCWGGT 1 cut(s) 861
SfaNI GCATC 2 cut(s) 60, 1270
SfcI CTRYAG 1 cut(s) 843
SinI GGWCC 3 cut(s) 274, 802, 964
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 2 cut(s) 115, 1065
SsiI CCGC 4 cut(s) 23, 170, 252, 1193
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 6 cut(s) 136, 604, 854, 861, 1092, 1252
TaaI ACNGT 2 cut(s) 308, 1060
TaiI ACGT 1 cut(s) 734
TaqI TCGA 1 cut(s) 68
TasI AATT 2 cut(s) 115, 1065
TatI WGTACW 2 cut(s) 308, 925
TfiI GAWTC 7 cut(s) 146, 280, 481, 553, 589, 779, 1163
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 3 cut(s) 1065, 1123, 1248
TseFI GTSAC 3 cut(s) 671, 1021, 1248
TseI GCWGC 3 cut(s) 711, 735, 1089
Tsp45I GTSAC 3 cut(s) 671, 1021, 1248
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 2 cut(s) 758, 846
TspRI CASTG 3 cut(s) 1065, 1123, 1248
Van91I CCANNNNNTGG 2 cut(s) 605, 1034
VpaK11BI GGWCC 3 cut(s) 274, 802, 964
XmnI GAANNNNTTC 1 cut(s) 838
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 2 cut(s) 310, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.