FvH4_6g09850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011413
Physical Location & Seq
Reverse (-)
5865469 .. 5869137
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09850.t1

Sequence Viewer

Length: 1293 bp
ATGGATTCGGATCGCAATTCGAATCGCTTCCTAGGGTTCCGCCGCGGTGATGCGAATCCCTGTCAGTTCAAGACTATCCCTTTGACGGTGTTGTTATTGCTCTTCATCGTCGCCGATTCCTCCAATGCTTCTTCGCTCTCCAAGCATAGATTTTTGATCGGTGATCCGACGACGACGACGAAGGTCAATTCGGACAATTCCACATCACCGCCGGATAAGGCTTCTCCGGTGGCGGCGACTCCACCGCCGCCTGTTAAACCTGATCCTGATACTAATCCTACGCCAGTTGACGATGCGAAGAACAAAACGGTATCTGCGCCGCCCGCCAAGACGCCGGACCTGAATCCGGATCCGAATAACGGTACTAAATCGACTCCGGTAAGTCCGCCGACTGATGCCGGTGACGGGAAGAATAACCAAACTCAGAAGCCGGATCCGAATCCGGAGAAGAAGCCGAAGGAGAATCCAGCTCCGAAGACTGATAAGAAGCCGAATCCGGTGCCTGGCAAGACACCGGAAGAGGATCCAAATGCAAAGCATTCGGATAGTGCGCCTGGTTCTGCTAGTCCACCGCCTCCTCATGTGGAAGGAGGTGAAGTAGAGAAGACTAAGAATAAAAGTGACAATGTGACCAATGTACCGAATGTGAGCGAAGAAAGCTGTGATGGGGTAAGCATAACATGCAACAATACGGCTATGGTTGCCTGCATTAAGAGCTTTGATAGGGAATCAACAGAAGCAGTCATTCTGGTCCAAAATGTACGCGACAGCACATTAAAGGGAAACCTTTCTGCAGAAGATACCATGGACCTGAAGATTCCCAAACACAAATATAAAAAGATCAAGCTCAAAATGGGTAAAAGCAACAAAATAGTACTTAAAGCTGGAAAGGGAGAATGCGTGCTCCAGATGGACCCTTTTGTATCTGAAGGAAACTTTTTCATGCGTTTCCCTTCTTATGAGAAGTTAGTGACACCAGTCAACGGTGCTTACTTGTTGATTGTTACAGTGATAATTTTTGGAGGGATGTGGGCTTTCTGCCTGGTTAGGAGGAGAAAACAGCGAACTGGAGGTGGAGTTCCGTATCAGGAACTTGAAATGGCATTGCCGGAATCGGCTTCAGCAACTGAGGTGGTTACGGCTGAAGGTTGGGATCAGGGTTGGGATGACGACTGGGATGGAGATAATGCAGTGAAATCACCTGGAGGGCATCTGGTAGGAAGCATCTCTGCTAATGGTCTTACTGCAAGGTCTTCAAACAAAGATGGGTGGGAAAATAACTGGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

431

Amino Acids

46.26

Weight (kDa)

5.88

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 216 - 306 5.5e-22 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 499
AccII CGCG 2 cut(s) 45, 765
AccIII TCCGGA 2 cut(s) 346, 442
AcuI CTGAAG 4 cut(s) 833, 948, 1104, 1164
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 4 cut(s) 364, 639, 762, 876
AfiI CCNNNNNNNGG 6 cut(s) 85, 346, 359, 405, 503, 983
AgsI TTSAA 3 cut(s) 70, 1097, 1257
AjnI CCWGG 4 cut(s) 502, 553, 1041, 1201
AloI GAACNNNNNNTCC 2 cut(s) 1062, 1094
AluBI AGCT 5 cut(s) 470, 660, 717, 847, 884
AluI AGCT 5 cut(s) 470, 660, 717, 847, 884
Alw21I GWGCWC 1 cut(s) 906
AlwNI CAGNNNCTG 1 cut(s) 1127
Aor13HI TCCGGA 2 cut(s) 346, 442
ArsI GACNNNNNNTTYG 2 cut(s) 64, 96
Asp700I GAANNNNTTC 2 cut(s) 26, 787
AspA2I CCTAGG 1 cut(s) 31
AspLEI GCGC 2 cut(s) 319, 553
AspS9I GGNCC 4 cut(s) 337, 751, 808, 913
AsuHPI GGTGA 6 cut(s) 59, 173, 198, 413, 605, 1191
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 4 cut(s) 337, 751, 808, 913
AvrII CCTAGG 1 cut(s) 31
BaeI ACNNNNGTAYC 2 cut(s) 621, 654
BamHI GGATCC 3 cut(s) 349, 433, 523
BanI GGYRCC 1 cut(s) 499
BbsI GAAGAC 3 cut(s) 482, 611, 1245
Bbv12I GWGCWC 1 cut(s) 906
BccI CCATC 4 cut(s) 659, 904, 1172, 1259
BceAI ACGGC 2 cut(s) 708, 1155
BcgI CGANNNNNNTGC 4 cut(s) 481, 515, 522, 556
BciT130I CCWGG 4 cut(s) 504, 555, 1043, 1203
BfaI CTAG 2 cut(s) 32, 564
BfmI CTRYAG 1 cut(s) 792
BisI GCNGC 4 cut(s) 43, 234, 248, 320
BlnI CCTAGG 1 cut(s) 31
BlsI GCNGC 4 cut(s) 44, 235, 249, 321
BmcAI AGTACT 1 cut(s) 876
Bme1390I CCNGG 4 cut(s) 504, 555, 1043, 1203
Bme18I GGWCC 4 cut(s) 337, 751, 808, 913
BmgT120I GGNCC 4 cut(s) 337, 751, 808, 913
BmiI GGNNCC 6 cut(s) 38, 351, 435, 501, 525, 915
BmrFI CCNGG 4 cut(s) 504, 555, 1043, 1203
BmrI ACTGGG 2 cut(s) 1183, 1291
BmsI GCATC 5 cut(s) 40, 283, 385, 1219, 1233
BmuI ACTGGG 2 cut(s) 1183, 1291
BoxI GACNNNNGTC 2 cut(s) 182, 977
BpiI GAAGAC 3 cut(s) 482, 611, 1245
BpmI CTGGAG 3 cut(s) 890, 1089, 1224
Bpu14I TTCGAA 1 cut(s) 20
BsaBI GATNNNNATC 4 cut(s) 9, 54, 273, 438
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 31, 43, 804
BsaWI WCCGGW 6 cut(s) 226, 346, 376, 442, 496, 514
BsaXI ACNNNNNCTCC 6 cut(s) 582, 612, 885, 915, 1062, 1092
Bsc4I CCNNNNNNNGG 6 cut(s) 85, 346, 359, 405, 503, 983
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 5 cut(s) 284, 977, 1072, 1178, 1286
Bse3DI GCAATG 1 cut(s) 1103
Bse8I GATNNNNATC 4 cut(s) 9, 54, 273, 438
BseAI TCCGGA 2 cut(s) 346, 442
BseBI CCWGG 4 cut(s) 504, 555, 1043, 1203
BseDI CCNNGG 3 cut(s) 31, 43, 804
BseGI GGATG 4 cut(s) 1032, 1171, 1183, 1291
BseJI GATNNNNATC 4 cut(s) 9, 54, 273, 438
BseLI CCNNNNNNNGG 6 cut(s) 85, 346, 359, 405, 503, 983
BseMI GCAATG 1 cut(s) 1103
BseMII CTCAG 2 cut(s) 437, 1119
BseNI ACTGG 5 cut(s) 284, 977, 1072, 1178, 1286
BseRI GAGGAG 2 cut(s) 567, 1066
Bsh1236I CGCG 2 cut(s) 45, 765
BshNI GGYRCC 1 cut(s) 499
BsiHKAI GWGCWC 1 cut(s) 906
BslI CCNNNNNNNGG 6 cut(s) 85, 346, 359, 405, 503, 983
BsmI GAATGC 2 cut(s) 538, 902
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 906
Bsp13I TCCGGA 2 cut(s) 346, 442
Bsp143I GATC 9 cut(s) 10, 156, 163, 262, 349, 433, 523, 840, 1153
Bsp19I CCATGG 1 cut(s) 804
BspCNI CTCAG 2 cut(s) 436, 1120
BspEI TCCGGA 2 cut(s) 346, 442
BspFNI CGCG 2 cut(s) 45, 765
BspLI GGNNCC 6 cut(s) 38, 351, 435, 501, 525, 915
BspMAI CTGCAG 1 cut(s) 796
BspQI GCTCTTC 1 cut(s) 107
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 1103
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 5 cut(s) 284, 977, 1072, 1178, 1286
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 3 cut(s) 31, 43, 804
BssMI GATC 9 cut(s) 10, 156, 163, 262, 349, 433, 523, 840, 1153
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 31, 804
Bst2UI CCWGG 4 cut(s) 504, 555, 1043, 1203
Bst4CI ACNGT 5 cut(s) 88, 310, 362, 986, 1009
Bst6I CTCTTC 2 cut(s) 107, 513
BstACI GRCGYC 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 681
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 324, 706, 902
BstDEI CTNAG 3 cut(s) 423, 609, 1128
BstDSI CCRYGG 2 cut(s) 43, 804
BstF5I GGATG 4 cut(s) 1032, 1171, 1183, 1291
BstFNI CGCG 2 cut(s) 45, 765
BstHHI GCGC 2 cut(s) 319, 553
BstKTI GATC 9 cut(s) 13, 159, 166, 265, 352, 436, 526, 843, 1156
BstMBI GATC 9 cut(s) 10, 156, 163, 262, 349, 433, 523, 840, 1153
BstMWI GCNNNNNNNGC 6 cut(s) 142, 323, 657, 681, 701, 714
BstNI CCWGG 4 cut(s) 504, 555, 1043, 1203
BstNSI RCATGY 1 cut(s) 684
BstPAI GACNNNNGTC 2 cut(s) 182, 977
BstSCI CCNGG 4 cut(s) 502, 553, 1041, 1201
BstSFI CTRYAG 1 cut(s) 792
BstUI CGCG 2 cut(s) 45, 765
BstV2I GAAGAC 3 cut(s) 482, 611, 1245
BstX2I RGATCY 3 cut(s) 349, 433, 523
BstYI RGATCY 3 cut(s) 349, 433, 523
BtgI CCRYGG 2 cut(s) 43, 804
BtsCI GGATG 4 cut(s) 1032, 1171, 1183, 1291
BtsI GCAGTG 1 cut(s) 1197
BtsIMutI CAGTG 2 cut(s) 1014, 1197
Cac8I GCNNGC 3 cut(s) 324, 706, 902
CaiI CAGNNNCTG 1 cut(s) 1127
CfoI GCGC 2 cut(s) 319, 553
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 4 cut(s) 337, 751, 808, 913
Cfr42I CCGCGG 1 cut(s) 46
CseI GACGC 1 cut(s) 340
Csp6I GTAC 4 cut(s) 363, 638, 761, 875
CspCI CAANNNNNGTGG 2 cut(s) 1113, 1148
CviAII CATG 4 cut(s) 581, 681, 805, 943
CviQI GTAC 4 cut(s) 363, 638, 761, 875
DdeI CTNAG 3 cut(s) 423, 609, 1128
DpnI GATC 9 cut(s) 12, 158, 165, 264, 351, 435, 525, 842, 1155
DpnII GATC 9 cut(s) 10, 156, 163, 262, 349, 433, 523, 840, 1153
Eam1104I CTCTTC 2 cut(s) 107, 513
EarI CTCTTC 2 cut(s) 107, 513
EciI GGCGGA 2 cut(s) 29, 375
Eco130I CCWWGG 2 cut(s) 31, 804
Eco47I GGWCC 4 cut(s) 337, 751, 808, 913
Eco57I CTGAAG 4 cut(s) 833, 948, 1104, 1164
EcoRII CCWGG 4 cut(s) 502, 553, 1041, 1201
EcoT14I CCWWGG 2 cut(s) 31, 804
ErhI CCWWGG 2 cut(s) 31, 804
FaeI CATG 4 cut(s) 584, 684, 808, 946
FaiI YATR 9 cut(s) 147, 582, 677, 682, 698, 806, 834, 944, 960
FatI CATG 4 cut(s) 580, 680, 804, 942
FauI CCCGC 1 cut(s) 331
Fnu4HI GCNGC 4 cut(s) 43, 234, 248, 320
FokI GGATG 3 cut(s) 1039, 1178, 1190
Fsp4HI GCNGC 4 cut(s) 43, 234, 248, 320
FspBI CTAG 2 cut(s) 32, 564
GlaI GCGC 2 cut(s) 318, 552
GluI GCNGC 4 cut(s) 43, 234, 248, 320
GsuI CTGGAG 3 cut(s) 890, 1089, 1224
HgaI GACGC 1 cut(s) 340
HhaI GCGC 2 cut(s) 319, 553
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 4 cut(s) 584, 684, 808, 946
Hin6I GCGC 2 cut(s) 317, 551
HinP1I GCGC 2 cut(s) 317, 551
HincII GTYRAC 2 cut(s) 289, 982
HindII GTYRAC 2 cut(s) 289, 982
HphI GGTGA 6 cut(s) 59, 173, 198, 413, 605, 1191
Hpy166II GTNNAC 3 cut(s) 289, 569, 982
Hpy188I TCNGA 9 cut(s) 10, 168, 193, 354, 426, 438, 474, 544, 928
Hpy188III TCNNGA 6 cut(s) 70, 266, 347, 443, 907, 1088
Hpy8I GTNNAC 3 cut(s) 289, 569, 982
Hpy99I CGWCG 5 cut(s) 113, 172, 175, 178, 181
HpyAV CCTTC 6 cut(s) 175, 451, 581, 923, 963, 1139
HpyCH4III ACNGT 5 cut(s) 88, 310, 362, 986, 1009
HpyCH4V TGCA 6 cut(s) 533, 684, 708, 794, 1190, 1247
HpyF10VI GCNNNNNNNGC 6 cut(s) 142, 323, 657, 681, 701, 714
HpyF3I CTNAG 3 cut(s) 423, 609, 1128
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 4 cut(s) 584, 684, 808, 946
HspAI GCGC 2 cut(s) 317, 551
Kpn2I TCCGGA 2 cut(s) 346, 442
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 9 cut(s) 10, 156, 163, 262, 349, 433, 523, 840, 1153
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 2 cut(s) 475, 909
LweI GCATC 5 cut(s) 40, 283, 385, 1219, 1233
MaeI CTAG 2 cut(s) 32, 564
MaeIII GTNAC 6 cut(s) 401, 620, 628, 970, 1003, 1135
MalI GATC 9 cut(s) 12, 158, 165, 264, 351, 435, 525, 842, 1155
MboI GATC 9 cut(s) 10, 156, 163, 262, 349, 433, 523, 840, 1153
MflI RGATCY 3 cut(s) 349, 433, 523
MhlI GDGCHC 1 cut(s) 906
MluCI AATT 4 cut(s) 16, 187, 196, 1014
MlyI GAGTC 2 cut(s) 232, 367
MmeI TCCRAC 1 cut(s) 191
MroI TCCGGA 2 cut(s) 346, 442
MroXI GAANNNNTTC 2 cut(s) 26, 787
MseI TTAA 4 cut(s) 255, 711, 776, 879
MspA1I CMGCKG 1 cut(s) 45
MspR9I CCNGG 4 cut(s) 504, 555, 1043, 1203
Mva1269I GAATGC 2 cut(s) 538, 902
MvaI CCWGG 4 cut(s) 504, 555, 1043, 1203
MvnI CGCG 2 cut(s) 45, 765
MwoI GCNNNNNNNGC 6 cut(s) 142, 323, 657, 681, 701, 714
NcoI CCATGG 1 cut(s) 804
NdeII GATC 9 cut(s) 10, 156, 163, 262, 349, 433, 523, 840, 1153
NlaIII CATG 4 cut(s) 584, 684, 808, 946
NlaIV GGNNCC 6 cut(s) 38, 351, 435, 501, 525, 915
NmuCI GTSAC 4 cut(s) 401, 620, 628, 970
NspI RCATGY 1 cut(s) 684
NspV TTCGAA 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PctI GAATGC 2 cut(s) 538, 902
PdmI GAANNNNTTC 2 cut(s) 26, 787
PkrI GCNGC 4 cut(s) 44, 235, 249, 321
PleI GAGTC 2 cut(s) 232, 367
PpsI GAGTC 2 cut(s) 232, 367
PshAI GACNNNNGTC 2 cut(s) 182, 977
Psp6I CCWGG 4 cut(s) 502, 553, 1041, 1201
PspGI CCWGG 4 cut(s) 502, 553, 1041, 1201
PspN4I GGNNCC 6 cut(s) 38, 351, 435, 501, 525, 915
PspPI GGNCC 4 cut(s) 337, 751, 808, 913
PstI CTGCAG 1 cut(s) 796
PstNI CAGNNNCTG 1 cut(s) 1127
PsuI RGATCY 3 cut(s) 349, 433, 523
RsaI GTAC 4 cut(s) 364, 639, 762, 876
RsaNI GTAC 4 cut(s) 363, 638, 761, 875
SacII CCGCGG 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 4 cut(s) 255, 711, 776, 879
SatI GCNGC 4 cut(s) 43, 234, 248, 320
Sau3AI GATC 9 cut(s) 10, 156, 163, 262, 349, 433, 523, 840, 1153
Sau96I GGNCC 4 cut(s) 337, 751, 808, 913
ScaI AGTACT 1 cut(s) 876
SchI GAGTC 2 cut(s) 232, 367
ScrFI CCNGG 4 cut(s) 504, 555, 1043, 1203
SduI GDGCHC 1 cut(s) 906
SfaNI GCATC 5 cut(s) 40, 283, 385, 1219, 1233
SfcI CTRYAG 1 cut(s) 792
Sfr303I CCGCGG 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 20
SgrBI CCGCGG 1 cut(s) 46
SinI GGWCC 4 cut(s) 337, 751, 808, 913
Sse9I AATT 4 cut(s) 16, 187, 196, 1014
SspMI CTAG 2 cut(s) 32, 564
StyD4I CCNGG 4 cut(s) 502, 553, 1041, 1201
StyI CCWWGG 2 cut(s) 31, 804
TaaI ACNGT 5 cut(s) 88, 310, 362, 986, 1009
TaqI TCGA 2 cut(s) 20, 371
TasI AATT 4 cut(s) 16, 187, 196, 1014
TatI WGTACW 1 cut(s) 874
TauI GCSGC 4 cut(s) 45, 236, 250, 322
Tru1I TTAA 4 cut(s) 255, 711, 776, 879
Tru9I TTAA 4 cut(s) 255, 711, 776, 879
TscAI CASTG 2 cut(s) 1014, 1197
TseFI GTSAC 4 cut(s) 401, 620, 628, 970
Tsp45I GTSAC 4 cut(s) 401, 620, 628, 970
TspDTI ATGAA 2 cut(s) 94, 931
TspGWI ACGGA 1 cut(s) 1071
TspRI CASTG 2 cut(s) 1014, 1197
VpaK11BI GGWCC 4 cut(s) 337, 751, 808, 913
XceI RCATGY 1 cut(s) 684
XmaJI CCTAGG 1 cut(s) 31
XmnI GAANNNNTTC 2 cut(s) 26, 787
XspI CTAG 2 cut(s) 32, 564
ZrmI AGTACT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.