Rh3AG100800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0011413
Physical Location & Seq
Reverse (-)
8393800 .. 8397415
3616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG100800.1

Sequence Viewer

Length: 1281 bp
ATGGACAGAACTAGTTTTCTGGCGGTGTTCTTATTGCTCTTCATCGTTTCCGATGTCACCAATGCTTCGATGCTCACCAAGCATAGATTTTTGATCGGTGATCCTCCGAAGGGCAATTCGGACAATCCCACATTACCGGGTAAGGATTCTCCGGTGGCGAGTCCACCTCCGCCTTCTAAACCTGATCCTGATCCTAATCCTAATCCTAAGCCAGTTGATGATGGGAAGAACAAAACGGGCTCTGCCCCACCCGCCAAGACGCCGGACCCGAAAGGTTCAAATAACAATACTAAACCGGCTCCGGTAGGTCCACCAACTGATACCGGTGGTGGGAAGAATAACCAAACACAGAAGCAGGATCCAAATCCTGTGCAGAAGCCGAAGGAGAAACCAACTCCAGAGCCTGAACAGAAGCCGAAGGAGAATCCAACTCCAGAGCCTGAACAGAAGCCGAAGGAGAATCCAACTACAGAGTCTGAGCAGAAGCCGAAGGAGAATCCAACTCCGGAGCCTGAGCAGAAGCCGAAGGAGAATCCAACTCCAGAGCCTGGCAAGACACCGGAAGAGGATCCAAGTGCAAAGACTCCAGAAATAGAGAAGACTAAGAATAAAAGTGACAATGTGACTAATACACCGAATGTGAAAACAGAAAGCTGCGATGGGGCAATCAAGAAGTGCAGCATTACGGATATGGTTGCCTGCATTAAGAGCTTCAATAGGGAATCAACAGAAGCAGTCATTCTGGTCCAAAATGTACGTGACAGCACATTGAACGGAAGCCTTTCTGCAGAAGATACCAGGGACCTGGTGATACCCAAACACGAATATAAAAAGATCAAGCTCAATATGGGTAAAAGCAACAAAATAGTACTGAAAGCTGGAAATGGAGAATGCGTGCTGGACCCTTTTGTATCTGAAGGAAACTTTTTCATGCGTTTCCCTTCTTATGAGAAGTTGGTGACGCCAATCAATGGTGCATACTTCTTGATTGTTACAGTGCTAATTTTTGGAGGGATGTGGGTTTGCTGCCTGGTTAGGAGGAGGAAACAGCGCACTGGAGGTGGAGTTCCTTATCAGGAACTTGAAATGGCATTGCCGGAATCGGCTTCAGCAACTGATGTGGTTACGGCAGAAGGTTGGGATCAGGGTTGGGATGACGATTGGGATGGAGATAATGCAGTGAAGTCACCTGGAGGGCATCTGGTGGGAAGCATATCTGCTAATGGTCTTACTGCAAGGTCTTTGAACAAAGATGGGTGGGAAAATAACTGGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

46.31

Weight (kDa)

5.39

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 213 - 301 4.3e-20 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 548, 971
AccIII TCCGGA 1 cut(s) 505
AciI CCGC 3 cut(s) 23, 170, 252
AclWI GGATC 8 cut(s) 95, 179, 185, 353, 366, 563, 576, 1149
AcuI CTGAAG 2 cut(s) 936, 1092
AcyI GRCGYC 2 cut(s) 260, 962
AfaI GTAC 2 cut(s) 756, 870
AfiI CCNNNNNNNGG 4 cut(s) 110, 330, 548, 971
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 5 cut(s) 279, 715, 772, 1085, 1246
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 5 cut(s) 547, 797, 804, 1029, 1189
AloI GAACNNNNNNTCC 2 cut(s) 1050, 1082
AluBI AGCT 4 cut(s) 654, 711, 841, 878
AluI AGCT 4 cut(s) 654, 711, 841, 878
AlwI GGATC 8 cut(s) 95, 179, 185, 353, 366, 563, 576, 1149
AlwNI CAGNNNCTG 5 cut(s) 404, 440, 476, 548, 1115
Aor13HI TCCGGA 1 cut(s) 505
ApeKI GCWGC 3 cut(s) 654, 678, 1026
AsiGI ACCGGT 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 781
AspLEI GCGC 1 cut(s) 1053
AspS9I GGNCC 5 cut(s) 265, 308, 745, 802, 901
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 6 cut(s) 49, 67, 110, 820, 970, 1179
AvaII GGWCC 5 cut(s) 265, 308, 745, 802, 901
BamHI GGATCC 2 cut(s) 358, 568
BanII GRGCYC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 3 cut(s) 641, 690, 1013
BccI CCATC 4 cut(s) 215, 653, 1160, 1247
BceAI ACGGC 1 cut(s) 1143
BciT130I CCWGG 5 cut(s) 549, 799, 806, 1031, 1191
BcnI CCSGG 1 cut(s) 138
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 2 cut(s) 468, 786
BisI GCNGC 3 cut(s) 655, 679, 1027
BlsI GCNGC 3 cut(s) 656, 680, 1028
BmcAI AGTACT 1 cut(s) 870
Bme1390I CCNGG 6 cut(s) 138, 549, 799, 806, 1031, 1191
Bme18I GGWCC 5 cut(s) 265, 308, 745, 802, 901
BmgT120I GGNCC 5 cut(s) 265, 308, 745, 802, 901
BmiI GGNNCC 7 cut(s) 267, 300, 360, 510, 570, 803, 903
BmrFI CCNGG 6 cut(s) 138, 549, 799, 806, 1031, 1191
BmrI ACTGGG 1 cut(s) 1279
BmsI GCATC 2 cut(s) 60, 1207
BmuI ACTGGG 1 cut(s) 1279
BpiI GAAGAC 1 cut(s) 605
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpmI CTGGAG 6 cut(s) 381, 417, 525, 570, 1077, 1212
Bpu10I CCTNAGC 2 cut(s) 207, 513
BpuMI CCSGG 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 758
BsaBI GATNNNNATC 3 cut(s) 189, 195, 363
BsaHI GRCGYC 2 cut(s) 260, 962
BsaJI CCNNGG 1 cut(s) 798
BsaWI WCCGGW 5 cut(s) 151, 301, 323, 505, 559
BsaXI ACNNNNNCTCC 4 cut(s) 879, 909, 1050, 1080
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 330, 548, 971
Bse118I RCCGGY 2 cut(s) 295, 323
Bse1I ACTGG 3 cut(s) 212, 1060, 1274
Bse3DI GCAATG 1 cut(s) 1091
Bse8I GATNNNNATC 3 cut(s) 189, 195, 363
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 5 cut(s) 549, 799, 806, 1031, 1191
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 4 cut(s) 1020, 1159, 1171, 1279
BseJI GATNNNNATC 3 cut(s) 189, 195, 363
BseLI CCNNNNNNNGG 4 cut(s) 110, 330, 548, 971
BseMI GCAATG 1 cut(s) 1091
BseMII CTCAG 2 cut(s) 468, 504
BseNI ACTGG 3 cut(s) 212, 1060, 1274
BseRI GAGGAG 1 cut(s) 1054
BseXI GCAGC 3 cut(s) 641, 690, 1013
BsgI GTGCAG 2 cut(s) 392, 697
BshTI ACCGGT 1 cut(s) 323
BsiSI CCGG 9 cut(s) 137, 152, 263, 296, 302, 324, 506, 560, 1097
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 4 cut(s) 110, 330, 548, 971
BsmFI GGGAC 1 cut(s) 815
BsmI GAATGC 1 cut(s) 896
Bsp1286I GDGCHC 1 cut(s) 242
Bsp13I TCCGGA 1 cut(s) 505
Bsp143I GATC 8 cut(s) 93, 100, 184, 190, 358, 568, 834, 1141
BspACI CCGC 3 cut(s) 23, 170, 252
BspCNI CTCAG 2 cut(s) 469, 505
BspEI TCCGGA 1 cut(s) 505
BspLI GGNNCC 7 cut(s) 267, 300, 360, 510, 570, 803, 903
BspMAI CTGCAG 1 cut(s) 790
BspPI GGATC 8 cut(s) 95, 179, 185, 353, 366, 563, 576, 1149
BspQI GCTCTTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 1091
BsrFI RCCGGY 2 cut(s) 295, 323
BsrI ACTGG 3 cut(s) 212, 1060, 1274
BssAI RCCGGY 2 cut(s) 295, 323
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 8 cut(s) 93, 100, 184, 190, 358, 568, 834, 1141
BssNI GRCGYC 2 cut(s) 260, 962
Bst2UI CCWGG 5 cut(s) 549, 799, 806, 1031, 1191
Bst4CI ACNGT 1 cut(s) 997
Bst6I CTCTTC 2 cut(s) 44, 558
BstACI GRCGYC 2 cut(s) 260, 962
BstBAI YACGTR 1 cut(s) 758
BstC8I GCNNGC 2 cut(s) 700, 896
BstDEI CTNAG 4 cut(s) 207, 477, 513, 603
BstF5I GGATG 4 cut(s) 1020, 1159, 1171, 1279
BstHHI GCGC 1 cut(s) 1053
BstKTI GATC 8 cut(s) 96, 103, 187, 193, 361, 571, 837, 1144
BstMBI GATC 8 cut(s) 93, 100, 184, 190, 358, 568, 834, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 79, 251, 708
BstNI CCWGG 5 cut(s) 549, 799, 806, 1031, 1191
BstSCI CCNGG 6 cut(s) 136, 547, 797, 804, 1029, 1189
BstSFI CTRYAG 2 cut(s) 468, 786
BstV1I GCAGC 3 cut(s) 641, 690, 1013
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 2 cut(s) 358, 568
BstXI CCANNNNNNTGG 1 cut(s) 805
BstYI RGATCY 2 cut(s) 358, 568
BtgZI GCGATG 1 cut(s) 672
BtsCI GGATG 4 cut(s) 1020, 1159, 1171, 1279
BtsI GCAGTG 1 cut(s) 1185
BtsIMutI CAGTG 3 cut(s) 1002, 1053, 1185
Cac8I GCNNGC 2 cut(s) 700, 896
CaiI CAGNNNCTG 5 cut(s) 404, 440, 476, 548, 1115
CfoI GCGC 1 cut(s) 1053
Cfr10I RCCGGY 2 cut(s) 295, 323
Cfr13I GGNCC 5 cut(s) 265, 308, 745, 802, 901
CseI GACGC 2 cut(s) 268, 970
CsiI ACCWGGT 1 cut(s) 804
Csp6I GTAC 2 cut(s) 755, 869
CspAI ACCGGT 1 cut(s) 323
CspCI CAANNNNNGTGG 2 cut(s) 1101, 1136
CviAII CATG 1 cut(s) 931
CviQI GTAC 2 cut(s) 755, 869
DdeI CTNAG 4 cut(s) 207, 477, 513, 603
DpnI GATC 8 cut(s) 95, 102, 186, 192, 360, 570, 836, 1143
DpnII GATC 8 cut(s) 93, 100, 184, 190, 358, 568, 834, 1141
Eam1104I CTCTTC 2 cut(s) 44, 558
EarI CTCTTC 2 cut(s) 44, 558
EciI GGCGGA 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 5 cut(s) 265, 308, 745, 802, 901
Eco57I CTGAAG 2 cut(s) 936, 1092
EcoO109I RGGNCCY 1 cut(s) 802
EcoRII CCWGG 5 cut(s) 547, 797, 804, 1029, 1189
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 1 cut(s) 934
FaiI YATR 8 cut(s) 84, 692, 828, 848, 932, 948, 979, 1214
FaqI GGGAC 1 cut(s) 815
FatI CATG 1 cut(s) 930
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 655, 679, 1027
FokI GGATG 3 cut(s) 1027, 1166, 1178
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 655, 679, 1027
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 1052
GluI GCNGC 3 cut(s) 655, 679, 1027
GsuI CTGGAG 6 cut(s) 381, 417, 525, 570, 1077, 1212
HapII CCGG 9 cut(s) 137, 152, 263, 296, 302, 324, 506, 560, 1097
HgaI GACGC 2 cut(s) 268, 970
HhaI GCGC 1 cut(s) 1053
Hin1I GRCGYC 2 cut(s) 260, 962
Hin1II CATG 1 cut(s) 934
Hin6I GCGC 1 cut(s) 1051
HinP1I GCGC 1 cut(s) 1051
HpaII CCGG 9 cut(s) 137, 152, 263, 296, 302, 324, 506, 560, 1097
HphI GGTGA 6 cut(s) 49, 67, 110, 820, 970, 1179
Hpy166II GTNNAC 2 cut(s) 164, 311
Hpy188I TCNGA 5 cut(s) 52, 108, 121, 478, 916
Hpy188III TCNNGA 9 cut(s) 188, 398, 434, 506, 542, 587, 670, 985, 1076
Hpy8I GTNNAC 2 cut(s) 164, 311
HpyCH4III ACNGT 1 cut(s) 997
HpyCH4IV ACGT 1 cut(s) 757
HpyCH4V TGCA 8 cut(s) 373, 578, 678, 702, 788, 977, 1178, 1235
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 251, 708
HpyF3I CTNAG 4 cut(s) 207, 477, 513, 603
HpySE526I ACGT 1 cut(s) 757
Hsp92I GRCGYC 2 cut(s) 260, 962
Hsp92II CATG 1 cut(s) 934
HspAI GCGC 1 cut(s) 1051
Kpn2I TCCGGA 1 cut(s) 505
Kzo9I GATC 8 cut(s) 93, 100, 184, 190, 358, 568, 834, 1141
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 2 cut(s) 304, 508
Lsp1109I GCAGC 3 cut(s) 641, 690, 1013
LweI GCATC 2 cut(s) 60, 1207
MabI ACCWGGT 1 cut(s) 804
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 757
MaeIII GTNAC 8 cut(s) 55, 614, 622, 758, 958, 991, 1123, 1185
MalI GATC 8 cut(s) 95, 102, 186, 192, 360, 570, 836, 1143
MboI GATC 8 cut(s) 93, 100, 184, 190, 358, 568, 834, 1141
MboII GAAGA 6 cut(s) 31, 238, 346, 575, 610, 803
MflI RGATCY 2 cut(s) 358, 568
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 2 cut(s) 115, 1002
MlyI GAGTC 3 cut(s) 169, 482, 577
MmeI TCCRAC 4 cut(s) 452, 488, 524, 560
MnlI CCTC 8 cut(s) 114, 177, 559, 1004, 1032, 1035, 1052, 1187
MroI TCCGGA 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 781
MseI TTAA 1 cut(s) 705
MspI CCGG 9 cut(s) 137, 152, 263, 296, 302, 324, 506, 560, 1097
MspR9I CCNGG 6 cut(s) 138, 549, 799, 806, 1031, 1191
Mva1269I GAATGC 1 cut(s) 896
MvaI CCWGG 5 cut(s) 549, 799, 806, 1031, 1191
MwoI GCNNNNNNNGC 3 cut(s) 79, 251, 708
NciI CCSGG 1 cut(s) 138
NdeII GATC 8 cut(s) 93, 100, 184, 190, 358, 568, 834, 1141
NlaIII CATG 1 cut(s) 934
NlaIV GGNNCC 7 cut(s) 267, 300, 360, 510, 570, 803, 903
NmuCI GTSAC 6 cut(s) 55, 614, 622, 758, 958, 1185
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 266
PctI GAATGC 1 cut(s) 896
PdmI GAANNNNTTC 1 cut(s) 781
PfeI GAWTC 7 cut(s) 146, 424, 460, 496, 532, 722, 1100
PflMI CCANNNNNTGG 2 cut(s) 548, 971
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 3 cut(s) 656, 680, 1028
PleI GAGTC 3 cut(s) 168, 481, 577
PpsI GAGTC 3 cut(s) 168, 481, 577
Ppu21I YACGTR 1 cut(s) 758
PpuMI RGGWCCY 1 cut(s) 802
Psp5II RGGWCCY 1 cut(s) 802
Psp6I CCWGG 5 cut(s) 547, 797, 804, 1029, 1189
PspGI CCWGG 5 cut(s) 547, 797, 804, 1029, 1189
PspN4I GGNNCC 7 cut(s) 267, 300, 360, 510, 570, 803, 903
PspPI GGNCC 5 cut(s) 265, 308, 745, 802, 901
PspPPI RGGWCCY 1 cut(s) 802
PstI CTGCAG 1 cut(s) 790
PstNI CAGNNNCTG 5 cut(s) 404, 440, 476, 548, 1115
PsuI RGATCY 2 cut(s) 358, 568
RsaI GTAC 2 cut(s) 756, 870
RsaNI GTAC 2 cut(s) 755, 869
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 3 cut(s) 655, 679, 1027
Sau3AI GATC 8 cut(s) 93, 100, 184, 190, 358, 568, 834, 1141
Sau96I GGNCC 5 cut(s) 265, 308, 745, 802, 901
ScaI AGTACT 1 cut(s) 870
SchI GAGTC 3 cut(s) 169, 482, 577
ScrFI CCNGG 6 cut(s) 138, 549, 799, 806, 1031, 1191
SduI GDGCHC 1 cut(s) 242
SexAI ACCWGGT 1 cut(s) 804
SfaNI GCATC 2 cut(s) 60, 1207
SfcI CTRYAG 2 cut(s) 468, 786
SinI GGWCC 5 cut(s) 265, 308, 745, 802, 901
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 2 cut(s) 115, 1002
SsiI CCGC 3 cut(s) 23, 170, 252
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 6 cut(s) 136, 547, 797, 804, 1029, 1189
TaaI ACNGT 1 cut(s) 997
TaiI ACGT 1 cut(s) 760
TaqI TCGA 1 cut(s) 68
TasI AATT 2 cut(s) 115, 1002
TatI WGTACW 1 cut(s) 868
TfiI GAWTC 7 cut(s) 146, 424, 460, 496, 532, 722, 1100
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 3 cut(s) 1002, 1060, 1185
TseFI GTSAC 6 cut(s) 55, 614, 622, 758, 958, 1185
TseI GCWGC 3 cut(s) 654, 678, 1026
Tsp45I GTSAC 6 cut(s) 55, 614, 622, 758, 958, 1185
TspDTI ATGAA 2 cut(s) 31, 919
TspGWI ACGGA 2 cut(s) 701, 789
TspRI CASTG 3 cut(s) 1002, 1060, 1185
Van91I CCANNNNNTGG 2 cut(s) 548, 971
VpaK11BI GGWCC 5 cut(s) 265, 308, 745, 802, 901
XmnI GAANNNNTTC 1 cut(s) 781
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.