Rw3G008580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011413
Physical Location & Seq
Reverse (-)
7956265 .. 7959714
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008580.1

Sequence Viewer

Length: 1311 bp
ATGGATTCGGATCGCAATTCCAGTCGGTTCCTTAGGACTCTTCCTTTAATGGACATAACTAGTTTTCTGGCGGTGTTCTTATTGCTCTTCATCGTTTCCGATGTCACCAATGCTTCGATGCTCACCAAGCATAGATTTTTGATCAGTGATCCTCCGAAGGGCAATCGGACAATCCCACATTACCGTCCACCTCCGCCTTCTAAACCTGATCCTGATCCTGATCCTAATCCTAATCCTAAGCCAGTTGATGATGGGAAGAAGAAAACGGGCTCTGCCCCACCCTCCAAGACGCCGGAGCCGAAAGGTTCAAATAACAGTACTAAACCGGCTCCGGTAGGTCCACCAACTGATACCGGTGGTGGGAAGAATAACCAAACACAGAAGCAGGATCCAAATCCTGTGCAGAAGCCGAAGGAGAAACCAACTCCAGAGCCTGAACAGAAGCCAAAGGAGAATCCAACTCCAGAGCCTGAACAGAAGCCGAAGGAGAATCCAACTCTGGAGTCTGAGCATAAGCCGAAGGAGAATCCAACTCTGGAGTCTGAGCAGAAGCCGAAGGAGAATCCAACTCCAGAGCCTGGCAAGACACCGGAAGAGGATCCAAGTGCAAAGACTCCAGAAATAGAGAAGACTAAGAATAAAAGTGACAATGTGACTAATACACCGAATGTGAAAAAAGAAAGCTGCGATGGGGCAATCAAGAAGTGCAGCAATACGGATATGGTTGCCTGCATTAAGAGCTTCAATAGGGAATCAACAGAAGCAGTCATTCTGGTCCAAAATGTACGTGACAGCACATTGAACGGAAACCTTTCTGCAGAAGATACCAGGGACCTGGTGATACCCAAACACGAATATAAAAAGATCAAGCTCCATATGGGTAAAAGCACCAAAATAGTACTGAAAGCTGGAAATGGAGAATGCGTGCTGGACCCTTTTGTATCTGAAGGAAACTTTTTCATGCGTTTCCCTTCTTATGAGAAGTTAGTGACGCCAATCAATGGTGCATACTTCTTGATTGTTACAGTGCTAATTTTTGGAGGGATGTGGGTTTGCTGCCTGGTTAGGAGGAGGAAACAGCGCACTGGAGGTGGAGTTCCTTATCAGGAACTTGAAATGGCATTGCCGGAATCGGCTTCAGCAACTGATGTGGTTACGGCAGAAGGTTGGGATCAGGGTTGGGATGACGATTGGGATGGAGATAATGCAGTGAAGTCACCTGGAGGGCATCTGGTGGGAAGCATATCTGCTAATGGTCTTACTGCAAGGTCTTTGAACAAAGATGGGTGGGAAAATAACTGGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

47.97

Weight (kDa)

6.18

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 223 - 311 1e-20 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 578, 1001
AciI CCGC 2 cut(s) 71, 194
AcuI CTGAAG 2 cut(s) 966, 1122
AcyI GRCGYC 2 cut(s) 290, 992
AfaI GTAC 3 cut(s) 319, 786, 900
AfiI CCNNNNNNNGG 4 cut(s) 158, 360, 578, 1001
AgeI ACCGGT 1 cut(s) 353
AgsI TTSAA 5 cut(s) 309, 745, 802, 1115, 1276
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 5 cut(s) 577, 827, 834, 1059, 1219
AloI GAACNNNNNNTCC 2 cut(s) 1080, 1112
AluBI AGCT 4 cut(s) 684, 741, 871, 908
AluI AGCT 4 cut(s) 684, 741, 871, 908
AlwNI CAGNNNCTG 4 cut(s) 434, 470, 578, 1145
ApeKI GCWGC 3 cut(s) 684, 708, 1056
AsiGI ACCGGT 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 811
AspLEI GCGC 1 cut(s) 1083
AspS9I GGNCC 4 cut(s) 338, 775, 832, 931
AsuHPI GGTGA 4 cut(s) 97, 115, 850, 1209
AvaII GGWCC 4 cut(s) 338, 775, 832, 931
AxyI CCTNAGG 1 cut(s) 32
BamHI GGATCC 2 cut(s) 388, 598
BanII GRGCYC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 635
BbvI GCAGC 3 cut(s) 671, 720, 1043
BccI CCATC 4 cut(s) 245, 683, 1190, 1277
BceAI ACGGC 1 cut(s) 1173
BciT130I CCWGG 5 cut(s) 579, 829, 836, 1061, 1221
BclI TGATCA 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 816
BisI GCNGC 3 cut(s) 685, 709, 1057
BlsI GCNGC 3 cut(s) 686, 710, 1058
BmcAI AGTACT 2 cut(s) 319, 900
Bme1390I CCNGG 5 cut(s) 579, 829, 836, 1061, 1221
Bme18I GGWCC 4 cut(s) 338, 775, 832, 931
BmgT120I GGNCC 4 cut(s) 338, 775, 832, 931
BmiI GGNNCC 7 cut(s) 29, 297, 330, 390, 600, 833, 933
BmrFI CCNGG 5 cut(s) 579, 829, 836, 1061, 1221
BmrI ACTGGG 1 cut(s) 1309
BmsI GCATC 2 cut(s) 108, 1237
BmuI ACTGGG 1 cut(s) 1309
BpiI GAAGAC 1 cut(s) 635
BpmI CTGGAG 8 cut(s) 411, 447, 521, 555, 557, 600, 1107, 1242
Bpu10I CCTNAGC 1 cut(s) 237
BsaAI YACGTR 1 cut(s) 788
BsaBI GATNNNNATC 5 cut(s) 9, 213, 219, 225, 393
BsaHI GRCGYC 2 cut(s) 290, 992
BsaJI CCNNGG 1 cut(s) 828
BsaWI WCCGGW 3 cut(s) 331, 353, 589
BsaXI ACNNNNNCTCC 4 cut(s) 909, 939, 1080, 1110
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 360, 578, 1001
Bse118I RCCGGY 2 cut(s) 325, 353
Bse1I ACTGG 4 cut(s) 21, 242, 1090, 1304
Bse21I CCTNAGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 1121
Bse8I GATNNNNATC 5 cut(s) 9, 213, 219, 225, 393
BseBI CCWGG 5 cut(s) 579, 829, 836, 1061, 1221
BseDI CCNNGG 1 cut(s) 828
BseGI GGATG 4 cut(s) 1050, 1189, 1201, 1309
BseJI GATNNNNATC 5 cut(s) 9, 213, 219, 225, 393
BseLI CCNNNNNNNGG 4 cut(s) 158, 360, 578, 1001
BseMI GCAATG 1 cut(s) 1121
BseMII CTCAG 2 cut(s) 498, 534
BseNI ACTGG 4 cut(s) 21, 242, 1090, 1304
BseRI GAGGAG 1 cut(s) 1084
BseXI GCAGC 3 cut(s) 671, 720, 1043
BsgI GTGCAG 2 cut(s) 422, 727
BshTI ACCGGT 1 cut(s) 353
BsiSI CCGG 6 cut(s) 293, 326, 332, 354, 590, 1127
BslFI GGGAC 1 cut(s) 845
BslI CCNNNNNNNGG 4 cut(s) 158, 360, 578, 1001
BsmFI GGGAC 1 cut(s) 845
BsmI GAATGC 1 cut(s) 926
Bsp1286I GDGCHC 1 cut(s) 272
BspACI CCGC 2 cut(s) 71, 194
BspCNI CTCAG 2 cut(s) 499, 535
BspLI GGNNCC 7 cut(s) 29, 297, 330, 390, 600, 833, 933
BspMAI CTGCAG 1 cut(s) 820
BspQI GCTCTTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 1121
BsrFI RCCGGY 2 cut(s) 325, 353
BsrI ACTGG 4 cut(s) 21, 242, 1090, 1304
BssAI RCCGGY 2 cut(s) 325, 353
BssECI CCNNGG 1 cut(s) 828
BssNI GRCGYC 2 cut(s) 290, 992
Bst2UI CCWGG 5 cut(s) 579, 829, 836, 1061, 1221
Bst4CI ACNGT 3 cut(s) 185, 317, 1027
Bst6I CTCTTC 3 cut(s) 45, 92, 588
BstACI GRCGYC 2 cut(s) 290, 992
BstBAI YACGTR 1 cut(s) 788
BstC8I GCNNGC 2 cut(s) 730, 926
BstDEI CTNAG 5 cut(s) 32, 237, 507, 543, 633
BstF5I GGATG 4 cut(s) 1050, 1189, 1201, 1309
BstHHI GCGC 1 cut(s) 1083
BstMWI GCNNNNNNNGC 2 cut(s) 127, 738
BstNI CCWGG 5 cut(s) 579, 829, 836, 1061, 1221
BstSCI CCNGG 5 cut(s) 577, 827, 834, 1059, 1219
BstSFI CTRYAG 1 cut(s) 816
BstV1I GCAGC 3 cut(s) 671, 720, 1043
BstV2I GAAGAC 1 cut(s) 635
BstX2I RGATCY 2 cut(s) 388, 598
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 2 cut(s) 388, 598
Bsu36I CCTNAGG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 702
BtsCI GGATG 4 cut(s) 1050, 1189, 1201, 1309
BtsI GCAGTG 1 cut(s) 1215
BtsIMutI CAGTG 4 cut(s) 151, 1032, 1083, 1215
Cac8I GCNNGC 2 cut(s) 730, 926
CaiI CAGNNNCTG 4 cut(s) 434, 470, 578, 1145
CfoI GCGC 1 cut(s) 1083
Cfr10I RCCGGY 2 cut(s) 325, 353
Cfr13I GGNCC 4 cut(s) 338, 775, 832, 931
CseI GACGC 2 cut(s) 298, 1000
CsiI ACCWGGT 1 cut(s) 834
Csp6I GTAC 3 cut(s) 318, 785, 899
CspAI ACCGGT 1 cut(s) 353
CspCI CAANNNNNGTGG 2 cut(s) 1131, 1166
CviAII CATG 1 cut(s) 961
CviQI GTAC 3 cut(s) 318, 785, 899
DdeI CTNAG 5 cut(s) 32, 237, 507, 543, 633
Eam1104I CTCTTC 3 cut(s) 45, 92, 588
EarI CTCTTC 3 cut(s) 45, 92, 588
EciI GGCGGA 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 4 cut(s) 338, 775, 832, 931
Eco57I CTGAAG 2 cut(s) 966, 1122
Eco81I CCTNAGG 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 832
EcoRII CCWGG 5 cut(s) 577, 827, 834, 1059, 1219
EcoT38I GRGCYC 1 cut(s) 272
FaeI CATG 1 cut(s) 964
FaqI GGGAC 1 cut(s) 845
FatI CATG 1 cut(s) 960
FauNDI CATATG 1 cut(s) 876
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 685, 709, 1057
FokI GGATG 3 cut(s) 1057, 1196, 1208
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 685, 709, 1057
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 1082
GluI GCNGC 3 cut(s) 685, 709, 1057
GsuI CTGGAG 8 cut(s) 411, 447, 521, 555, 557, 600, 1107, 1242
HapII CCGG 6 cut(s) 293, 326, 332, 354, 590, 1127
HgaI GACGC 2 cut(s) 298, 1000
HhaI GCGC 1 cut(s) 1083
Hin1I GRCGYC 2 cut(s) 290, 992
Hin1II CATG 1 cut(s) 964
Hin6I GCGC 1 cut(s) 1081
HinP1I GCGC 1 cut(s) 1081
HpaII CCGG 6 cut(s) 293, 326, 332, 354, 590, 1127
HphI GGTGA 4 cut(s) 97, 115, 850, 1209
Hpy166II GTNNAC 2 cut(s) 188, 341
Hpy188I TCNGA 7 cut(s) 10, 100, 156, 168, 508, 544, 946
Hpy8I GTNNAC 2 cut(s) 188, 341
HpyAV CCTTC 9 cut(s) 151, 207, 406, 478, 514, 550, 941, 981, 1157
HpyCH4III ACNGT 3 cut(s) 185, 317, 1027
HpyCH4IV ACGT 1 cut(s) 787
HpyCH4V TGCA 8 cut(s) 403, 608, 708, 732, 818, 1007, 1208, 1265
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 738
HpyF3I CTNAG 5 cut(s) 32, 237, 507, 543, 633
HpySE526I ACGT 1 cut(s) 787
Hsp92I GRCGYC 2 cut(s) 290, 992
Hsp92II CATG 1 cut(s) 964
HspAI GCGC 1 cut(s) 1081
Ksp22I TGATCA 1 cut(s) 141
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 3 cut(s) 295, 334, 876
Lsp1109I GCAGC 3 cut(s) 671, 720, 1043
LweI GCATC 2 cut(s) 108, 1237
MabI ACCWGGT 1 cut(s) 834
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 787
MaeIII GTNAC 8 cut(s) 103, 644, 652, 788, 988, 1021, 1153, 1215
MboII GAAGA 8 cut(s) 32, 79, 268, 271, 376, 605, 640, 833
MflI RGATCY 2 cut(s) 388, 598
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 2 cut(s) 16, 1032
MlyI GAGTC 4 cut(s) 31, 512, 548, 607
MmeI TCCRAC 4 cut(s) 482, 518, 554, 590
MnlI CCTC 9 cut(s) 162, 201, 292, 589, 1034, 1062, 1065, 1082, 1217
MroXI GAANNNNTTC 1 cut(s) 811
MseI TTAA 2 cut(s) 47, 735
MspI CCGG 6 cut(s) 293, 326, 332, 354, 590, 1127
MspR9I CCNGG 5 cut(s) 579, 829, 836, 1061, 1221
Mva1269I GAATGC 1 cut(s) 926
MvaI CCWGG 5 cut(s) 579, 829, 836, 1061, 1221
MwoI GCNNNNNNNGC 2 cut(s) 127, 738
NdeI CATATG 1 cut(s) 876
NlaIII CATG 1 cut(s) 964
NlaIV GGNNCC 7 cut(s) 29, 297, 330, 390, 600, 833, 933
NmuCI GTSAC 6 cut(s) 103, 644, 652, 788, 988, 1215
PciSI GCTCTTC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PctI GAATGC 1 cut(s) 926
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 7 cut(s) 5, 454, 490, 526, 562, 752, 1130
PflMI CCANNNNNTGG 2 cut(s) 578, 1001
PinAI ACCGGT 1 cut(s) 353
PkrI GCNGC 3 cut(s) 686, 710, 1058
PleI GAGTC 4 cut(s) 31, 511, 547, 607
PpsI GAGTC 4 cut(s) 31, 511, 547, 607
Ppu21I YACGTR 1 cut(s) 788
PpuMI RGGWCCY 1 cut(s) 832
Psp5II RGGWCCY 1 cut(s) 832
Psp6I CCWGG 5 cut(s) 577, 827, 834, 1059, 1219
PspGI CCWGG 5 cut(s) 577, 827, 834, 1059, 1219
PspN4I GGNNCC 7 cut(s) 29, 297, 330, 390, 600, 833, 933
PspPI GGNCC 4 cut(s) 338, 775, 832, 931
PspPPI RGGWCCY 1 cut(s) 832
PstI CTGCAG 1 cut(s) 820
PstNI CAGNNNCTG 4 cut(s) 434, 470, 578, 1145
PsuI RGATCY 2 cut(s) 388, 598
RsaI GTAC 3 cut(s) 319, 786, 900
RsaNI GTAC 3 cut(s) 318, 785, 899
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 47, 735
SatI GCNGC 3 cut(s) 685, 709, 1057
Sau96I GGNCC 4 cut(s) 338, 775, 832, 931
ScaI AGTACT 2 cut(s) 319, 900
SchI GAGTC 4 cut(s) 31, 512, 548, 607
ScrFI CCNGG 5 cut(s) 579, 829, 836, 1061, 1221
SduI GDGCHC 1 cut(s) 272
SexAI ACCWGGT 1 cut(s) 834
SfaNI GCATC 2 cut(s) 108, 1237
SfcI CTRYAG 1 cut(s) 816
SinI GGWCC 4 cut(s) 338, 775, 832, 931
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 2 cut(s) 16, 1032
SsiI CCGC 2 cut(s) 71, 194
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 5 cut(s) 577, 827, 834, 1059, 1219
TaaI ACNGT 3 cut(s) 185, 317, 1027
TaiI ACGT 1 cut(s) 790
TaqI TCGA 1 cut(s) 116
TasI AATT 2 cut(s) 16, 1032
TatI WGTACW 2 cut(s) 317, 898
TfiI GAWTC 7 cut(s) 5, 454, 490, 526, 562, 752, 1130
Tru1I TTAA 2 cut(s) 47, 735
Tru9I TTAA 2 cut(s) 47, 735
TscAI CASTG 4 cut(s) 151, 1032, 1090, 1215
TseFI GTSAC 6 cut(s) 103, 644, 652, 788, 988, 1215
TseI GCWGC 3 cut(s) 684, 708, 1056
Tsp45I GTSAC 6 cut(s) 103, 644, 652, 788, 988, 1215
TspDTI ATGAA 2 cut(s) 79, 949
TspGWI ACGGA 2 cut(s) 731, 819
TspRI CASTG 4 cut(s) 151, 1032, 1090, 1215
Van91I CCANNNNNTGG 2 cut(s) 578, 1001
VpaK11BI GGWCC 4 cut(s) 338, 775, 832, 931
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 2 cut(s) 319, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.