Rh3BG104800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011413
Physical Location & Seq
Reverse (-)
8385293 .. 8389010
3718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG104800.1

Sequence Viewer

Length: 1215 bp
ATGGACAGAACTAGTTTTCTGGCGGTGTTCTTATTGCTCTTCATCGTTTCCGATGTCACCAATGCTTCGATGCTCACCAAGCATAGATTTTTGATCGGTGATCCTCCGAAGGGCAATTCGGACAATCCCACATTACCGGGTAAGGATTCTCCGGTGGTGAGTCCACCTCCGCCTTCTAAACCTGATCCTGATCCTGATCCTAATCCTAATCCTAAGCCAGTTGATGATGGGAAGAAGAAAACGGGCTCTGCCCCACCCTCCAAGACGCCGGAGCCGAAAGGTTCAAATAACAGTACTAAACCGGCTCCGGTAGGTCCACCAACTGATACCGGTGGTGGGAAGAATAACCAAACACAGAAGCAGGATCCAAATCCTGTGCAGAAGCCGAAGGAGAAACCAACTCCAGAGCCTGAACAGAAGCCGAAGGAGAATCCAACTCTGGAGTCTGAGCAGAAGCCGAAGGAGAATCCAACTCCAGAGCCTGGCAAGACACCGGAAGAGGATCCAAGTGCAAAGACTCCAGAAATAGAGAAGACTAAGAATAAAAGTGCCAATGTGACTAATACACCGAATGTGAAAAAAGAAAGCTGCGATGGGGCAATCAAGAAGTGCAGCAGTACGGATATGGTTGCCTGCATTAAGAGCTTCAATAGGGAATCAACAGAAGCAGTCATTCTGGTCCAAAATGTACGTGACAGCACATTGAACGGAAACCTTTCTGCAGAAGATACCAGGGACCTGGTGATACCCAAACACGAATATAAAAAGATCAAGCTCCATATGGGTAAAAGCAACAAAATAGTACTGAAAGCTGGAAATGGAGAATGCGTGCTGGACGCTTTTGTATCTGAAGGAAACTTTTTCATGCGTTTCCCTTCTTATGAGAAGTTAGTGACGCCAATCAATGGTGCATACTTCTTGATTGTTACAGTGCTGATTTTTGGAGGGATGTGGGTTTGCTGCCTGGTTAGGAGGAGGAAACAGCGCACTGGAGGTGGAGTTCCTTATCAGGAACTTGAAATGGCATTGCCGGAATCGGCTTCAGCAACTGATGTGGTTACGGCAGAAGGTTGGGATCAGGGTTGGGATGACGATTGGGATGGAGATAATGCAGTGAAGTCACCTGGAGGGCATCTGGTGGGAAGCATATCTGCTAATGGTCTTACTGCAAGGTCTTTGAACAAAGATGGGTGGGAAAATAACTGGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

43.81

Weight (kDa)

5.98

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 191 - 279 5.4e-20 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 482, 905
AciI CCGC 2 cut(s) 23, 170
AclWI GGATC 9 cut(s) 95, 179, 185, 191, 359, 372, 497, 510, 1083
AcuI CTGAAG 2 cut(s) 870, 1026
AcyI GRCGYC 2 cut(s) 266, 896
AfaI GTAC 4 cut(s) 295, 619, 690, 804
AfiI CCNNNNNNNGG 4 cut(s) 110, 336, 482, 905
AgeI ACCGGT 1 cut(s) 329
AgsI TTSAA 5 cut(s) 285, 649, 706, 1019, 1180
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 5 cut(s) 481, 731, 738, 963, 1123
AloI GAACNNNNNNTCC 2 cut(s) 984, 1016
AluBI AGCT 4 cut(s) 588, 645, 775, 812
AluI AGCT 4 cut(s) 588, 645, 775, 812
AlwI GGATC 9 cut(s) 95, 179, 185, 191, 359, 372, 497, 510, 1083
AlwNI CAGNNNCTG 3 cut(s) 410, 482, 1049
ApeKI GCWGC 3 cut(s) 588, 612, 960
AsiGI ACCGGT 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 715
AspLEI GCGC 1 cut(s) 987
AspS9I GGNCC 3 cut(s) 314, 679, 736
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 6 cut(s) 49, 67, 110, 169, 754, 1113
AvaII GGWCC 3 cut(s) 314, 679, 736
BamHI GGATCC 2 cut(s) 364, 502
BanII GRGCYC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 539
BbvI GCAGC 3 cut(s) 575, 624, 947
BccI CCATC 4 cut(s) 221, 587, 1094, 1181
BceAI ACGGC 1 cut(s) 1077
BciT130I CCWGG 5 cut(s) 483, 733, 740, 965, 1125
BcnI CCSGG 1 cut(s) 138
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 720
BisI GCNGC 3 cut(s) 589, 613, 961
BlsI GCNGC 3 cut(s) 590, 614, 962
BmcAI AGTACT 2 cut(s) 295, 804
Bme1390I CCNGG 6 cut(s) 138, 483, 733, 740, 965, 1125
Bme18I GGWCC 3 cut(s) 314, 679, 736
BmgT120I GGNCC 3 cut(s) 314, 679, 736
BmiI GGNNCC 5 cut(s) 273, 306, 366, 504, 737
BmrFI CCNGG 6 cut(s) 138, 483, 733, 740, 965, 1125
BmrI ACTGGG 1 cut(s) 1213
BmsI GCATC 2 cut(s) 60, 1141
BmuI ACTGGG 1 cut(s) 1213
BpiI GAAGAC 1 cut(s) 539
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpmI CTGGAG 6 cut(s) 387, 459, 461, 504, 1011, 1146
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 692
BsaBI GATNNNNATC 4 cut(s) 189, 195, 201, 369
BsaHI GRCGYC 2 cut(s) 266, 896
BsaJI CCNNGG 1 cut(s) 732
BsaWI WCCGGW 4 cut(s) 151, 307, 329, 493
BsaXI ACNNNNNCTCC 4 cut(s) 813, 843, 984, 1014
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 336, 482, 905
Bse118I RCCGGY 2 cut(s) 301, 329
Bse1I ACTGG 3 cut(s) 218, 994, 1208
Bse3DI GCAATG 1 cut(s) 1025
Bse8I GATNNNNATC 4 cut(s) 189, 195, 201, 369
BseBI CCWGG 5 cut(s) 483, 733, 740, 965, 1125
BseDI CCNNGG 1 cut(s) 732
BseGI GGATG 4 cut(s) 954, 1093, 1105, 1213
BseJI GATNNNNATC 4 cut(s) 189, 195, 201, 369
BseLI CCNNNNNNNGG 4 cut(s) 110, 336, 482, 905
BseMI GCAATG 1 cut(s) 1025
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 3 cut(s) 218, 994, 1208
BseRI GAGGAG 1 cut(s) 988
BseXI GCAGC 3 cut(s) 575, 624, 947
BsgI GTGCAG 2 cut(s) 398, 631
BshTI ACCGGT 1 cut(s) 329
BsiSI CCGG 8 cut(s) 137, 152, 269, 302, 308, 330, 494, 1031
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 4 cut(s) 110, 336, 482, 905
BsmFI GGGAC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 830
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 502, 768, 1075
BspACI CCGC 2 cut(s) 23, 170
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 5 cut(s) 273, 306, 366, 504, 737
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 9 cut(s) 95, 179, 185, 191, 359, 372, 497, 510, 1083
BspQI GCTCTTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 1025
BsrFI RCCGGY 2 cut(s) 301, 329
BsrI ACTGG 3 cut(s) 218, 994, 1208
BssAI RCCGGY 2 cut(s) 301, 329
BssECI CCNNGG 1 cut(s) 732
BssMI GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 502, 768, 1075
BssNI GRCGYC 2 cut(s) 266, 896
Bst2UI CCWGG 5 cut(s) 483, 733, 740, 965, 1125
Bst4CI ACNGT 2 cut(s) 293, 931
Bst6I CTCTTC 2 cut(s) 44, 492
BstACI GRCGYC 2 cut(s) 266, 896
BstBAI YACGTR 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 634, 830
BstDEI CTNAG 3 cut(s) 213, 447, 537
BstF5I GGATG 4 cut(s) 954, 1093, 1105, 1213
BstHHI GCGC 1 cut(s) 987
BstKTI GATC 9 cut(s) 96, 103, 187, 193, 199, 367, 505, 771, 1078
BstMBI GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 502, 768, 1075
BstMWI GCNNNNNNNGC 2 cut(s) 79, 642
BstNI CCWGG 5 cut(s) 483, 733, 740, 965, 1125
BstSCI CCNGG 6 cut(s) 136, 481, 731, 738, 963, 1123
BstSFI CTRYAG 1 cut(s) 720
BstV1I GCAGC 3 cut(s) 575, 624, 947
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 2 cut(s) 364, 502
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 2 cut(s) 364, 502
BtgZI GCGATG 1 cut(s) 606
BtsCI GGATG 4 cut(s) 954, 1093, 1105, 1213
BtsI GCAGTG 1 cut(s) 1119
BtsIMutI CAGTG 3 cut(s) 936, 987, 1119
Cac8I GCNNGC 2 cut(s) 634, 830
CaiI CAGNNNCTG 3 cut(s) 410, 482, 1049
CfoI GCGC 1 cut(s) 987
Cfr10I RCCGGY 2 cut(s) 301, 329
Cfr13I GGNCC 3 cut(s) 314, 679, 736
CseI GACGC 3 cut(s) 274, 845, 904
CsiI ACCWGGT 1 cut(s) 738
Csp6I GTAC 4 cut(s) 294, 618, 689, 803
CspAI ACCGGT 1 cut(s) 329
CspCI CAANNNNNGTGG 2 cut(s) 1035, 1070
CviAII CATG 1 cut(s) 865
CviQI GTAC 4 cut(s) 294, 618, 689, 803
DdeI CTNAG 3 cut(s) 213, 447, 537
DpnI GATC 9 cut(s) 95, 102, 186, 192, 198, 366, 504, 770, 1077
DpnII GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 502, 768, 1075
Eam1104I CTCTTC 2 cut(s) 44, 492
EarI CTCTTC 2 cut(s) 44, 492
EciI GGCGGA 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 248
Eco47I GGWCC 3 cut(s) 314, 679, 736
Eco57I CTGAAG 2 cut(s) 870, 1026
EcoO109I RGGNCCY 1 cut(s) 736
EcoRII CCWGG 5 cut(s) 481, 731, 738, 963, 1123
EcoT38I GRGCYC 1 cut(s) 248
FaeI CATG 1 cut(s) 868
FaiI YATR 9 cut(s) 84, 626, 762, 780, 782, 866, 882, 913, 1148
FaqI GGGAC 1 cut(s) 749
FatI CATG 1 cut(s) 864
FauNDI CATATG 1 cut(s) 780
Fnu4HI GCNGC 3 cut(s) 589, 613, 961
FokI GGATG 3 cut(s) 961, 1100, 1112
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 3 cut(s) 589, 613, 961
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 986
GluI GCNGC 3 cut(s) 589, 613, 961
GsuI CTGGAG 6 cut(s) 387, 459, 461, 504, 1011, 1146
HapII CCGG 8 cut(s) 137, 152, 269, 302, 308, 330, 494, 1031
HgaI GACGC 3 cut(s) 274, 845, 904
HhaI GCGC 1 cut(s) 987
Hin1I GRCGYC 2 cut(s) 266, 896
Hin1II CATG 1 cut(s) 868
Hin6I GCGC 1 cut(s) 985
HinP1I GCGC 1 cut(s) 985
HinfI GANTC 8 cut(s) 146, 160, 430, 443, 466, 517, 656, 1034
HpaII CCGG 8 cut(s) 137, 152, 269, 302, 308, 330, 494, 1031
HphI GGTGA 6 cut(s) 49, 67, 110, 169, 754, 1113
Hpy166II GTNNAC 2 cut(s) 164, 317
Hpy188I TCNGA 5 cut(s) 52, 108, 121, 448, 850
Hpy188III TCNNGA 9 cut(s) 188, 194, 404, 440, 476, 521, 604, 919, 1010
Hpy8I GTNNAC 2 cut(s) 164, 317
HpyAV CCTTC 8 cut(s) 103, 183, 382, 418, 454, 845, 885, 1061
HpyCH4III ACNGT 2 cut(s) 293, 931
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 8 cut(s) 379, 512, 612, 636, 722, 911, 1112, 1169
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 642
HpyF3I CTNAG 3 cut(s) 213, 447, 537
HpySE526I ACGT 1 cut(s) 691
Hsp92I GRCGYC 2 cut(s) 266, 896
Hsp92II CATG 1 cut(s) 868
HspAI GCGC 1 cut(s) 985
Kzo9I GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 502, 768, 1075
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 3 cut(s) 271, 310, 780
Lsp1109I GCAGC 3 cut(s) 575, 624, 947
LweI GCATC 2 cut(s) 60, 1141
MabI ACCWGGT 1 cut(s) 738
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 7 cut(s) 55, 556, 692, 892, 925, 1057, 1119
MalI GATC 9 cut(s) 95, 102, 186, 192, 198, 366, 504, 770, 1077
MboI GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 502, 768, 1075
MboII GAAGA 7 cut(s) 31, 244, 247, 352, 509, 544, 737
MflI RGATCY 2 cut(s) 364, 502
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 1 cut(s) 115
MlyI GAGTC 3 cut(s) 169, 452, 511
MmeI TCCRAC 2 cut(s) 458, 494
MnlI CCTC 9 cut(s) 114, 177, 268, 493, 938, 966, 969, 986, 1121
MroXI GAANNNNTTC 1 cut(s) 715
MseI TTAA 1 cut(s) 639
MspI CCGG 8 cut(s) 137, 152, 269, 302, 308, 330, 494, 1031
MspR9I CCNGG 6 cut(s) 138, 483, 733, 740, 965, 1125
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 5 cut(s) 483, 733, 740, 965, 1125
MwoI GCNNNNNNNGC 2 cut(s) 79, 642
NciI CCSGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 780
NdeII GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 502, 768, 1075
NlaIII CATG 1 cut(s) 868
NlaIV GGNNCC 5 cut(s) 273, 306, 366, 504, 737
NmuCI GTSAC 5 cut(s) 55, 556, 692, 892, 1119
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PctI GAATGC 1 cut(s) 830
PdmI GAANNNNTTC 1 cut(s) 715
PfeI GAWTC 5 cut(s) 146, 430, 466, 656, 1034
PflMI CCANNNNNTGG 2 cut(s) 482, 905
PinAI ACCGGT 1 cut(s) 329
PkrI GCNGC 3 cut(s) 590, 614, 962
PleI GAGTC 3 cut(s) 168, 451, 511
PpsI GAGTC 3 cut(s) 168, 451, 511
Ppu21I YACGTR 1 cut(s) 692
PpuMI RGGWCCY 1 cut(s) 736
Psp5II RGGWCCY 1 cut(s) 736
Psp6I CCWGG 5 cut(s) 481, 731, 738, 963, 1123
PspGI CCWGG 5 cut(s) 481, 731, 738, 963, 1123
PspN4I GGNNCC 5 cut(s) 273, 306, 366, 504, 737
PspPI GGNCC 3 cut(s) 314, 679, 736
PspPPI RGGWCCY 1 cut(s) 736
PstI CTGCAG 1 cut(s) 724
PstNI CAGNNNCTG 3 cut(s) 410, 482, 1049
PsuI RGATCY 2 cut(s) 364, 502
RsaI GTAC 4 cut(s) 295, 619, 690, 804
RsaNI GTAC 4 cut(s) 294, 618, 689, 803
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 3 cut(s) 589, 613, 961
Sau3AI GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 502, 768, 1075
Sau96I GGNCC 3 cut(s) 314, 679, 736
ScaI AGTACT 2 cut(s) 295, 804
SchI GAGTC 3 cut(s) 169, 452, 511
ScrFI CCNGG 6 cut(s) 138, 483, 733, 740, 965, 1125
SduI GDGCHC 1 cut(s) 248
SexAI ACCWGGT 1 cut(s) 738
SfaNI GCATC 2 cut(s) 60, 1141
SfcI CTRYAG 1 cut(s) 720
SinI GGWCC 3 cut(s) 314, 679, 736
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 1 cut(s) 115
SsiI CCGC 2 cut(s) 23, 170
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 6 cut(s) 136, 481, 731, 738, 963, 1123
TaaI ACNGT 2 cut(s) 293, 931
TaiI ACGT 1 cut(s) 694
TaqI TCGA 1 cut(s) 68
TasI AATT 1 cut(s) 115
TatI WGTACW 2 cut(s) 293, 802
TfiI GAWTC 5 cut(s) 146, 430, 466, 656, 1034
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 3 cut(s) 936, 994, 1119
TseFI GTSAC 5 cut(s) 55, 556, 692, 892, 1119
TseI GCWGC 3 cut(s) 588, 612, 960
Tsp45I GTSAC 5 cut(s) 55, 556, 692, 892, 1119
TspDTI ATGAA 2 cut(s) 31, 853
TspGWI ACGGA 2 cut(s) 635, 723
TspRI CASTG 3 cut(s) 936, 994, 1119
Van91I CCANNNNNTGG 2 cut(s) 482, 905
VpaK11BI GGWCC 3 cut(s) 314, 679, 736
XmnI GAANNNNTTC 1 cut(s) 715
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 2 cut(s) 295, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.