Prupe.6G293800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011413
Physical Location & Seq
Forward (+)
26982045 .. 26985991
3947 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G293800.1

Sequence Viewer

Length: 1284 bp
ATGGATAGAAATGGTTTTCTGACAGTGTTCTTATTTATCTTCATTGTTGCGGAGGCTTCCAATGCTTCTTTGCTCTCCAAGCATAGAATTTTGATTGGTGAGCCTCAAAACGACAGTTCGACAGTACCAGGCAAGGATTCTCCGGTGCCAAGTCCTCCTCCGCCTCCTCCGTCTCCTCCCCCTCCAGTTTCAAGTTCTGGTGGCAATAGGTCTGTTCCTATGGCGGATGACGATCCAAGTAAGAACAAAACGGACACTCTGCCACCCGCCAAGACTCCGAAAGCGGATCCAGGTCCAAGGGGTTTGAATAATAATACTAAAACGGATGAAGGGAAGGGTCCGAATAAAGAAAAGAAGGATCCAAATCCGACGCCTGACACGGAATCCAAAAAGGATCCGAACCCGGTTCCTGCTACGACACCGAAACAGGATCCGAATTCAAAGCAGTTGAAAGATGAACCGAATTCGGCGAGTGCACCTCCTGAAGGTGGTAAGGTAAAGAATAAGGAGGACTCGCCTGAAGGTGGTAAGGTAAAGAATAAGGAGGACTCCCCTGAAGGTGGTAAGGTAAAGAGTAAGGAGATAGAGAAGGAGAAGAACGATAATGTGAACAATTCGCAGAATGCGGATAGGGAAAGCTGCGATGGGATAATCAAAAGATGCCAGATCAAGGATGTGGTGGTTGCTTGCATTAAGAGCTTTGATAGTGGGTCCAAAGAAGTGGTCATTCTGGTCCAAAACATTGGAGACAGCACTTTGAAGTCCAAGGTTTCTGCAGAAAATACCAAGATGGACCTAAAGATTGCCAAACACAAAAATGAGAAGGTCAATATATCACTTGATATTGATAGAAGCACCAAAATAACTCTAAATACTGGAAACGGAGAATGTGAGCTTCATATGGACCCACCAGTATCTGATGGAAATTTTTTCCTGCGTCTTCCTTCTTATGAGAAGGTAGTGACCCCAATCAATGGTGCTTACTTCTTGATTGTTACAGTGCTAATTTTTGGCGGGACGTGGGCTTTCTGCAAGGCTAGGAAGAGGAAACAGCGTACTGGAGGTGGAGTTCCATATCAGGAACTTGAAATGGGATTGCCAGAATCTGTTTCGGCAACTGCTGTAGAAACGGCTGAAGGCTGGGATCAGGGTTGGGATGATGATTGGGATGGAGATAATGCAGTGAAGTCACCGGGGGCGCATCTTGTGGGAAGCATCTCGGCGAATGGCCTTACTTCTAGGTCTGCAAACAAAGATGGGTGGGAAAATGACTGGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

428

Amino Acids

45.95

Weight (kDa)

5.45

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AccB7I CCANNNNNTGG 1 cut(s) 974
AciI CCGC 7 cut(s) 50, 161, 224, 267, 284, 626, 1014
AcsI RAATTY 4 cut(s) 87, 436, 463, 925
AcuI CTGAAG 4 cut(s) 504, 540, 576, 1155
AcyI GRCGYC 1 cut(s) 371
AfaI GTAC 2 cut(s) 126, 1057
AfiI CCNNNNNNNGG 6 cut(s) 485, 488, 524, 560, 670, 974
AgsI TTSAA 6 cut(s) 192, 307, 441, 451, 760, 1088
AjiI CACGTC 1 cut(s) 1020
AjnI CCWGG 2 cut(s) 127, 289
AloI GAACNNNNNNTCC 2 cut(s) 1053, 1085
AluBI AGCT 3 cut(s) 639, 699, 895
AluI AGCT 3 cut(s) 639, 699, 895
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 2 cut(s) 177, 741
Alw44I GTGCAC 1 cut(s) 474
AlwNI CAGNNNCTG 2 cut(s) 917, 1106
AoxI GGCC 1 cut(s) 1228
ApaLI GTGCAC 1 cut(s) 474
ApeKI GCWGC 1 cut(s) 639
ApoI RAATTY 4 cut(s) 87, 436, 463, 925
ArsI GACNNNNNNTTYG 2 cut(s) 708, 740
AspLEI GCGC 1 cut(s) 1201
AspS9I GGNCC 6 cut(s) 293, 338, 711, 733, 793, 904
AsuC2I CCSGG 2 cut(s) 404, 1194
AsuHPI GGTGA 2 cut(s) 110, 1182
AvaII GGWCC 6 cut(s) 293, 338, 711, 733, 793, 904
BaeGI GKGCMC 1 cut(s) 478
BamHI GGATCC 4 cut(s) 286, 358, 394, 430
BanI GGYRCC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 932
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 1 cut(s) 626
BccI CCATC 5 cut(s) 638, 784, 914, 1163, 1250
BceAI ACGGC 1 cut(s) 1146
BciT130I CCWGG 2 cut(s) 129, 291
BcnI CCSGG 2 cut(s) 404, 1194
BcoDI GTCTC 2 cut(s) 177, 741
BfaI CTAG 2 cut(s) 1038, 1239
BfmI CTRYAG 2 cut(s) 774, 1122
BisI GCNGC 1 cut(s) 640
BlsI GCNGC 1 cut(s) 641
Bme1390I CCNGG 4 cut(s) 129, 291, 404, 1194
Bme18I GGWCC 6 cut(s) 293, 338, 711, 733, 793, 904
BmgBI CACGTC 1 cut(s) 1020
BmgT120I GGNCC 6 cut(s) 293, 338, 711, 733, 793, 904
BmiI GGNNCC 9 cut(s) 147, 288, 339, 360, 396, 408, 432, 712, 906
BmrFI CCNGG 4 cut(s) 129, 291, 404, 1194
BmrI ACTGGG 1 cut(s) 1282
BmsI GCATC 3 cut(s) 650, 1210, 1224
BmuI ACTGGG 1 cut(s) 1282
BpiI GAAGAC 1 cut(s) 932
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 2 cut(s) 168, 1080
BpuMI CCSGG 2 cut(s) 404, 1194
BsaBI GATNNNNATC 2 cut(s) 231, 363
BsaHI GRCGYC 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 296, 765, 1193
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 1053, 1083
Bsc4I CCNNNNNNNGG 6 cut(s) 485, 488, 524, 560, 670, 974
Bse1I ACTGG 5 cut(s) 185, 880, 911, 1063, 1277
Bse8I GATNNNNATC 2 cut(s) 231, 363
BseBI CCWGG 2 cut(s) 129, 291
BseDI CCNNGG 3 cut(s) 296, 765, 1193
BseGI GGATG 6 cut(s) 232, 331, 679, 1162, 1174, 1282
BseJI GATNNNNATC 2 cut(s) 231, 363
BseLI CCNNNNNNNGG 6 cut(s) 485, 488, 524, 560, 670, 974
BseNI ACTGG 5 cut(s) 185, 880, 911, 1063, 1277
BseRI GAGGAG 3 cut(s) 147, 156, 165
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 1 cut(s) 626
BseYI CCCAGC 1 cut(s) 1140
BshFI GGCC 1 cut(s) 1230
BshNI GGYRCC 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 478
BsiSI CCGG 3 cut(s) 143, 404, 1193
BslFI GGGAC 1 cut(s) 1030
BslI CCNNNNNNNGG 6 cut(s) 485, 488, 524, 560, 670, 974
BsmAI GTCTC 2 cut(s) 177, 741
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 1030
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 1 cut(s) 1230
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 7 cut(s) 232, 286, 358, 394, 430, 666, 1144
BspACI CCGC 7 cut(s) 50, 161, 224, 267, 284, 626, 1014
BspANI GGCC 1 cut(s) 1230
BspLI GGNNCC 9 cut(s) 147, 288, 339, 360, 396, 408, 432, 712, 906
BspMAI CTGCAG 1 cut(s) 778
BspT107I GGYRCC 1 cut(s) 145
BsrI ACTGG 5 cut(s) 185, 880, 911, 1063, 1277
BssECI CCNNGG 3 cut(s) 296, 765, 1193
BssMI GATC 7 cut(s) 232, 286, 358, 394, 430, 666, 1144
BssNI GRCGYC 1 cut(s) 371
BssT1I CCWWGG 2 cut(s) 296, 765
Bst2UI CCWGG 2 cut(s) 129, 291
Bst4CI ACNGT 4 cut(s) 25, 116, 124, 1000
Bst6I CTCTTC 1 cut(s) 1037
BstACI GRCGYC 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 688
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 6 cut(s) 232, 331, 679, 1162, 1174, 1282
BstHHI GCGC 1 cut(s) 1201
BstKTI GATC 7 cut(s) 235, 289, 361, 397, 433, 669, 1147
BstMAI GTCTC 2 cut(s) 177, 741
BstMBI GATC 7 cut(s) 232, 286, 358, 394, 430, 666, 1144
BstMWI GCNNNNNNNGC 3 cut(s) 62, 79, 696
BstNI CCWGG 2 cut(s) 129, 291
BstSCI CCNGG 4 cut(s) 127, 289, 402, 1192
BstSFI CTRYAG 2 cut(s) 774, 1122
BstSLI GKGCMC 1 cut(s) 478
BstV1I GCAGC 1 cut(s) 626
BstV2I GAAGAC 1 cut(s) 932
BstX2I RGATCY 4 cut(s) 286, 358, 394, 430
BstXI CCANNNNNNTGG 2 cut(s) 721, 743
BstYI RGATCY 4 cut(s) 286, 358, 394, 430
BsuRI GGCC 1 cut(s) 1230
BtgZI GCGATG 1 cut(s) 657
BtrI CACGTC 1 cut(s) 1020
BtsCI GGATG 6 cut(s) 232, 331, 679, 1162, 1174, 1282
BtsI GCAGTG 1 cut(s) 1188
BtsIMutI CAGTG 3 cut(s) 30, 1005, 1188
Cac8I GCNNGC 1 cut(s) 688
CaiI CAGNNNCTG 2 cut(s) 917, 1106
CfoI GCGC 1 cut(s) 1201
Cfr13I GGNCC 6 cut(s) 293, 338, 711, 733, 793, 904
CseI GACGC 2 cut(s) 379, 926
Csp6I GTAC 2 cut(s) 125, 1056
CviQI GTAC 2 cut(s) 125, 1056
DpnI GATC 7 cut(s) 234, 288, 360, 396, 432, 668, 1146
DpnII GATC 7 cut(s) 232, 286, 358, 394, 430, 666, 1144
Eam1104I CTCTTC 1 cut(s) 1037
EarI CTCTTC 1 cut(s) 1037
EciI GGCGGA 2 cut(s) 150, 239
Eco130I CCWWGG 2 cut(s) 296, 765
Eco47I GGWCC 6 cut(s) 293, 338, 711, 733, 793, 904
Eco57I CTGAAG 4 cut(s) 504, 540, 576, 1155
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoRI GAATTC 2 cut(s) 436, 463
EcoRII CCWGG 2 cut(s) 127, 289
EcoT14I CCWWGG 2 cut(s) 296, 765
ErhI CCWWGG 2 cut(s) 296, 765
Esp3I CGTCTC 1 cut(s) 177
FaiI YATR 7 cut(s) 84, 221, 833, 900, 902, 951, 1075
FaqI GGGAC 1 cut(s) 1030
FauI CCCGC 2 cut(s) 274, 1007
FauNDI CATATG 1 cut(s) 900
Fnu4HI GCNGC 1 cut(s) 640
FokI GGATG 5 cut(s) 239, 338, 686, 1169, 1181
Fsp4HI GCNGC 1 cut(s) 640
FspBI CTAG 2 cut(s) 1038, 1239
GlaI GCGC 1 cut(s) 1200
GluI GCNGC 1 cut(s) 640
GsaI CCCAGC 1 cut(s) 1144
GsuI CTGGAG 2 cut(s) 168, 1080
HaeIII GGCC 1 cut(s) 1230
HapII CCGG 3 cut(s) 143, 404, 1193
HgaI GACGC 2 cut(s) 379, 926
HhaI GCGC 1 cut(s) 1201
Hin1I GRCGYC 1 cut(s) 371
Hin6I GCGC 1 cut(s) 1199
HinP1I GCGC 1 cut(s) 1199
HinfI GANTC 6 cut(s) 137, 274, 383, 512, 548, 1103
HpaII CCGG 3 cut(s) 143, 404, 1193
HphI GGTGA 2 cut(s) 110, 1182
Hpy166II GTNNAC 2 cut(s) 476, 610
Hpy188I TCNGA 7 cut(s) 21, 279, 342, 369, 399, 435, 919
Hpy188III TCNNGA 3 cut(s) 482, 988, 1079
Hpy8I GTNNAC 2 cut(s) 476, 610
Hpy99I CGWCG 1 cut(s) 373
HpyCH4III ACNGT 4 cut(s) 25, 116, 124, 1000
HpyCH4IV ACGT 1 cut(s) 1019
HpyCH4V TGCA 6 cut(s) 476, 690, 776, 1032, 1181, 1247
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 79, 696
HpySE526I ACGT 1 cut(s) 1019
Hsp92I GRCGYC 1 cut(s) 371
HspAI GCGC 1 cut(s) 1199
Kzo9I GATC 7 cut(s) 232, 286, 358, 394, 430, 666, 1144
Lsp1109I GCAGC 1 cut(s) 626
LweI GCATC 3 cut(s) 650, 1210, 1224
MaeI CTAG 2 cut(s) 1038, 1239
MaeII ACGT 1 cut(s) 1019
MaeIII GTNAC 3 cut(s) 961, 994, 1188
MalI GATC 7 cut(s) 234, 288, 360, 396, 432, 668, 1146
MboI GATC 7 cut(s) 232, 286, 358, 394, 430, 666, 1144
MboII GAAGA 4 cut(s) 31, 607, 932, 1054
MflI RGATCY 4 cut(s) 286, 358, 394, 430
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 6 cut(s) 87, 436, 463, 613, 925, 1005
MlyI GAGTC 3 cut(s) 268, 506, 542
MmeI TCCRAC 1 cut(s) 392
MseI TTAA 1 cut(s) 693
MslI CAYNNNNRTG 1 cut(s) 816
MspI CCGG 3 cut(s) 143, 404, 1193
MspR9I CCNGG 4 cut(s) 129, 291, 404, 1194
Mva1269I GAATGC 1 cut(s) 628
MvaI CCWGG 2 cut(s) 129, 291
MwoI GCNNNNNNNGC 3 cut(s) 62, 79, 696
NciI CCSGG 2 cut(s) 404, 1194
NdeI CATATG 1 cut(s) 900
NdeII GATC 7 cut(s) 232, 286, 358, 394, 430, 666, 1144
NlaIV GGNNCC 9 cut(s) 147, 288, 339, 360, 396, 408, 432, 712, 906
NmeAIII GCCGAG 1 cut(s) 1199
NmuCI GTSAC 2 cut(s) 961, 1188
PctI GAATGC 1 cut(s) 628
PfeI GAWTC 3 cut(s) 137, 383, 1103
PflMI CCANNNNNTGG 1 cut(s) 974
PkrI GCNGC 1 cut(s) 641
PleI GAGTC 3 cut(s) 268, 506, 542
PpsI GAGTC 3 cut(s) 268, 506, 542
Psp6I CCWGG 2 cut(s) 127, 289
PspFI CCCAGC 1 cut(s) 1140
PspGI CCWGG 2 cut(s) 127, 289
PspN4I GGNNCC 9 cut(s) 147, 288, 339, 360, 396, 408, 432, 712, 906
PspPI GGNCC 6 cut(s) 293, 338, 711, 733, 793, 904
PstI CTGCAG 1 cut(s) 778
PstNI CAGNNNCTG 2 cut(s) 917, 1106
PsuI RGATCY 4 cut(s) 286, 358, 394, 430
RsaI GTAC 2 cut(s) 126, 1057
RsaNI GTAC 2 cut(s) 125, 1056
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 1 cut(s) 640
Sau3AI GATC 7 cut(s) 232, 286, 358, 394, 430, 666, 1144
Sau96I GGNCC 6 cut(s) 293, 338, 711, 733, 793, 904
SchI GAGTC 3 cut(s) 268, 506, 542
ScrFI CCNGG 4 cut(s) 129, 291, 404, 1194
SduI GDGCHC 1 cut(s) 478
SfaNI GCATC 3 cut(s) 650, 1210, 1224
SfcI CTRYAG 2 cut(s) 774, 1122
SinI GGWCC 6 cut(s) 293, 338, 711, 733, 793, 904
SmiMI CAYNNNNRTG 1 cut(s) 816
Sse9I AATT 6 cut(s) 87, 436, 463, 613, 925, 1005
SsiI CCGC 7 cut(s) 50, 161, 224, 267, 284, 626, 1014
SspMI CTAG 2 cut(s) 1038, 1239
StyD4I CCNGG 4 cut(s) 127, 289, 402, 1192
StyI CCWWGG 2 cut(s) 296, 765
TaaI ACNGT 4 cut(s) 25, 116, 124, 1000
TaiI ACGT 1 cut(s) 1022
TaqI TCGA 1 cut(s) 119
TasI AATT 6 cut(s) 87, 436, 463, 613, 925, 1005
TfiI GAWTC 3 cut(s) 137, 383, 1103
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 3 cut(s) 30, 1005, 1188
TseFI GTSAC 2 cut(s) 961, 1188
TseI GCWGC 1 cut(s) 639
Tsp45I GTSAC 2 cut(s) 961, 1188
TspDTI ATGAA 4 cut(s) 31, 342, 471, 887
TspGWI ACGGA 5 cut(s) 159, 266, 338, 395, 897
TspRI CASTG 3 cut(s) 30, 1005, 1188
Van91I CCANNNNNTGG 1 cut(s) 974
VneI GTGCAC 1 cut(s) 474
VpaK11BI GGWCC 6 cut(s) 293, 338, 711, 733, 793, 904
XagI CCTNNNNNAGG 1 cut(s) 483
XapI RAATTY 4 cut(s) 87, 436, 463, 925
XspI CTAG 2 cut(s) 1038, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.