Rh3DG106100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011413
Physical Location & Seq
Reverse (-)
8537062 .. 8539941
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG106100.1

Sequence Viewer

Length: 1251 bp
ATGGACAGAACTAGTTTTCTGGCGGTGTTCTTATTGCTCTTCATCGTTTCCGATGTCACCAATGCTTCGATGCTCACCAAGCATAGATTTTTGATCAGTGATCCTCCGAAGGGCAAATCGGACAATCCCACATTACCGGGTAAGGATTCTCCGGTGGTGAGTCCACCTCCGCCTTCTAAACCTGATCCCGATCCTGATCCTAATCCTAATCCTAAGCCAGTTGATGATGGGAAGAACAAAAGGGGCTCTGCCCCACCCTCCAAGACGCCGGAGCCGAAAGGTTCAAATAACAGTACTAAACCGGCTCCGGTAGGTCCACCAACTGATACCGGTGGTGGGAAGAATAACCAAACACAGAAGCAGGATCCAAATCCTGTGCAGAAGCCGAAGGAGAAACCAACTCCAGAGCCTGAACAGAAGCCGAAGGAGAATCCAACTCCAGAGCCTGAACAGAAGCCGAAGGAGAATCCAACTCTGGAGTCTGAGCAGAAGCCGAAGGAGAATCCAACTCCAGAGCCTGGCAAGACACCGGAAGAGGATCCAAGTGCAAAGACTCCAGAAATAGAGAAGACTAAGAATAAAAGTGCCAATGTGACTAATACACCGAATGTGAAAAAAGAAAGCTGCGATGGGGCAATCAAGAAGTGCAGCAATACGGATATGGTTGCCTGCATTAAGAGCTTCAATAGGGAATCAACAGAAGCAGTCATTCTGGTCCAAAATGTACGTGACAGCACATTGAACGGAAGCCTTTCTGCAGAAGATACCAGGGACCTGGTGATACCCAAACACGAATATAAAAAGATCAAGCTCCATATGGGTAAAAGCAACAAAATAGTACTGAAAGCTGGAAATGGAGAATGCGTGCTGGACCCTTTTGTATCTGAAGGAAACTTTTTCATGCGTTTCCCTTCTTATGAGAAGTTAGTGACGCCAATCAATGGTGCATACTTCTTGATTGTTACAGTGCTAATTTTTGGAGGGATGTGGGTTTGCTGCCTGGTTAGGAGGAGGAAACAGCGCACTGGAGGTGGAGTTCCTTATCAGGAACTTGAAATGGCATTGCCGGAATCGGCTTCAGCAACTGATGTGGTTACGGCAGAAGGTTGGGATCAGGGTTGGGATGACGATTGGGATGGAGATAATGCAGTGAAGTCACCTGGAGGGCATCTGGTGGGAAGCATATCTGCTAATGGTCTTACTGCAAGGTCTTTGAACAAAGATGGGTGGGAAAATAACTGGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

416

Amino Acids

45.3

Weight (kDa)

6.0

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 203 - 291 1.1e-19 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 518, 941
AciI CCGC 2 cut(s) 23, 170
AclWI GGATC 9 cut(s) 95, 179, 185, 191, 359, 372, 533, 546, 1119
AcuI CTGAAG 2 cut(s) 906, 1062
AcyI GRCGYC 2 cut(s) 266, 932
AfaI GTAC 3 cut(s) 295, 726, 840
AfiI CCNNNNNNNGG 4 cut(s) 110, 336, 518, 941
AgeI ACCGGT 1 cut(s) 329
AgsI TTSAA 5 cut(s) 285, 685, 742, 1055, 1216
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 5 cut(s) 517, 767, 774, 999, 1159
AloI GAACNNNNNNTCC 2 cut(s) 1020, 1052
AluBI AGCT 4 cut(s) 624, 681, 811, 848
AluI AGCT 4 cut(s) 624, 681, 811, 848
AlwI GGATC 9 cut(s) 95, 179, 185, 191, 359, 372, 533, 546, 1119
AlwNI CAGNNNCTG 4 cut(s) 410, 446, 518, 1085
ApeKI GCWGC 3 cut(s) 624, 648, 996
AsiGI ACCGGT 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 751
AspLEI GCGC 1 cut(s) 1023
AspS9I GGNCC 4 cut(s) 314, 715, 772, 871
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 5 cut(s) 49, 67, 169, 790, 1149
AvaII GGWCC 4 cut(s) 314, 715, 772, 871
BamHI GGATCC 2 cut(s) 364, 538
BanII GRGCYC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 575
BbvI GCAGC 3 cut(s) 611, 660, 983
BccI CCATC 4 cut(s) 221, 623, 1130, 1217
BceAI ACGGC 1 cut(s) 1113
BciT130I CCWGG 5 cut(s) 519, 769, 776, 1001, 1161
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 1 cut(s) 138
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 756
BisI GCNGC 3 cut(s) 625, 649, 997
BlsI GCNGC 3 cut(s) 626, 650, 998
BmcAI AGTACT 2 cut(s) 295, 840
Bme1390I CCNGG 6 cut(s) 138, 519, 769, 776, 1001, 1161
Bme18I GGWCC 4 cut(s) 314, 715, 772, 871
BmgT120I GGNCC 4 cut(s) 314, 715, 772, 871
BmiI GGNNCC 6 cut(s) 273, 306, 366, 540, 773, 873
BmrFI CCNGG 6 cut(s) 138, 519, 769, 776, 1001, 1161
BmrI ACTGGG 1 cut(s) 1249
BmsI GCATC 2 cut(s) 60, 1177
BmuI ACTGGG 1 cut(s) 1249
BpiI GAAGAC 1 cut(s) 575
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpmI CTGGAG 7 cut(s) 387, 423, 495, 497, 540, 1047, 1182
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 728
BsaBI GATNNNNATC 4 cut(s) 189, 195, 201, 369
BsaHI GRCGYC 2 cut(s) 266, 932
BsaJI CCNNGG 1 cut(s) 768
BsaWI WCCGGW 4 cut(s) 151, 307, 329, 529
BsaXI ACNNNNNCTCC 4 cut(s) 849, 879, 1020, 1050
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 336, 518, 941
Bse118I RCCGGY 2 cut(s) 301, 329
Bse1I ACTGG 3 cut(s) 218, 1030, 1244
Bse3DI GCAATG 1 cut(s) 1061
Bse8I GATNNNNATC 4 cut(s) 189, 195, 201, 369
BseBI CCWGG 5 cut(s) 519, 769, 776, 1001, 1161
BseDI CCNNGG 1 cut(s) 768
BseGI GGATG 4 cut(s) 990, 1129, 1141, 1249
BseJI GATNNNNATC 4 cut(s) 189, 195, 201, 369
BseLI CCNNNNNNNGG 4 cut(s) 110, 336, 518, 941
BseMI GCAATG 1 cut(s) 1061
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 3 cut(s) 218, 1030, 1244
BseRI GAGGAG 1 cut(s) 1024
BseXI GCAGC 3 cut(s) 611, 660, 983
BsgI GTGCAG 2 cut(s) 398, 667
BshTI ACCGGT 1 cut(s) 329
BsiSI CCGG 8 cut(s) 137, 152, 269, 302, 308, 330, 530, 1067
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 4 cut(s) 110, 336, 518, 941
BsmFI GGGAC 1 cut(s) 785
BsmI GAATGC 1 cut(s) 866
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 538, 804, 1111
BspACI CCGC 2 cut(s) 23, 170
BspCNI CTCAG 1 cut(s) 475
BspLI GGNNCC 6 cut(s) 273, 306, 366, 540, 773, 873
BspMAI CTGCAG 1 cut(s) 760
BspPI GGATC 9 cut(s) 95, 179, 185, 191, 359, 372, 533, 546, 1119
BspQI GCTCTTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 1061
BsrFI RCCGGY 2 cut(s) 301, 329
BsrI ACTGG 3 cut(s) 218, 1030, 1244
BssAI RCCGGY 2 cut(s) 301, 329
BssECI CCNNGG 1 cut(s) 768
BssMI GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 538, 804, 1111
BssNI GRCGYC 2 cut(s) 266, 932
Bst2UI CCWGG 5 cut(s) 519, 769, 776, 1001, 1161
Bst4CI ACNGT 2 cut(s) 293, 967
Bst6I CTCTTC 2 cut(s) 44, 528
BstACI GRCGYC 2 cut(s) 266, 932
BstBAI YACGTR 1 cut(s) 728
BstC8I GCNNGC 2 cut(s) 670, 866
BstDEI CTNAG 3 cut(s) 213, 483, 573
BstF5I GGATG 4 cut(s) 990, 1129, 1141, 1249
BstHHI GCGC 1 cut(s) 1023
BstKTI GATC 9 cut(s) 96, 103, 187, 193, 199, 367, 541, 807, 1114
BstMBI GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 538, 804, 1111
BstMWI GCNNNNNNNGC 2 cut(s) 79, 678
BstNI CCWGG 5 cut(s) 519, 769, 776, 1001, 1161
BstSCI CCNGG 6 cut(s) 136, 517, 767, 774, 999, 1159
BstSFI CTRYAG 1 cut(s) 756
BstV1I GCAGC 3 cut(s) 611, 660, 983
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 2 cut(s) 364, 538
BstXI CCANNNNNNTGG 1 cut(s) 775
BstYI RGATCY 2 cut(s) 364, 538
BtgZI GCGATG 1 cut(s) 642
BtsCI GGATG 4 cut(s) 990, 1129, 1141, 1249
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 4 cut(s) 103, 972, 1023, 1155
Cac8I GCNNGC 2 cut(s) 670, 866
CaiI CAGNNNCTG 4 cut(s) 410, 446, 518, 1085
CfoI GCGC 1 cut(s) 1023
Cfr10I RCCGGY 2 cut(s) 301, 329
Cfr13I GGNCC 4 cut(s) 314, 715, 772, 871
CseI GACGC 2 cut(s) 274, 940
CsiI ACCWGGT 1 cut(s) 774
Csp6I GTAC 3 cut(s) 294, 725, 839
CspAI ACCGGT 1 cut(s) 329
CspCI CAANNNNNGTGG 2 cut(s) 1071, 1106
CviAII CATG 1 cut(s) 901
CviQI GTAC 3 cut(s) 294, 725, 839
DdeI CTNAG 3 cut(s) 213, 483, 573
DpnI GATC 9 cut(s) 95, 102, 186, 192, 198, 366, 540, 806, 1113
DpnII GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 538, 804, 1111
Eam1104I CTCTTC 2 cut(s) 44, 528
EarI CTCTTC 2 cut(s) 44, 528
EciI GGCGGA 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 248
Eco47I GGWCC 4 cut(s) 314, 715, 772, 871
Eco57I CTGAAG 2 cut(s) 906, 1062
EcoO109I RGGNCCY 1 cut(s) 772
EcoRII CCWGG 5 cut(s) 517, 767, 774, 999, 1159
EcoT38I GRGCYC 1 cut(s) 248
FaeI CATG 1 cut(s) 904
FaiI YATR 9 cut(s) 84, 662, 798, 816, 818, 902, 918, 949, 1184
FaqI GGGAC 1 cut(s) 785
FatI CATG 1 cut(s) 900
FauNDI CATATG 1 cut(s) 816
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 625, 649, 997
FokI GGATG 3 cut(s) 997, 1136, 1148
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 3 cut(s) 625, 649, 997
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 1022
GluI GCNGC 3 cut(s) 625, 649, 997
GsuI CTGGAG 7 cut(s) 387, 423, 495, 497, 540, 1047, 1182
HapII CCGG 8 cut(s) 137, 152, 269, 302, 308, 330, 530, 1067
HgaI GACGC 2 cut(s) 274, 940
HhaI GCGC 1 cut(s) 1023
Hin1I GRCGYC 2 cut(s) 266, 932
Hin1II CATG 1 cut(s) 904
Hin6I GCGC 1 cut(s) 1021
HinP1I GCGC 1 cut(s) 1021
HinfI GANTC 9 cut(s) 146, 160, 430, 466, 479, 502, 553, 692, 1070
HpaII CCGG 8 cut(s) 137, 152, 269, 302, 308, 330, 530, 1067
HphI GGTGA 5 cut(s) 49, 67, 169, 790, 1149
Hpy166II GTNNAC 2 cut(s) 164, 317
Hpy188I TCNGA 5 cut(s) 52, 108, 121, 484, 886
Hpy8I GTNNAC 2 cut(s) 164, 317
HpyAV CCTTC 9 cut(s) 103, 183, 382, 418, 454, 490, 881, 921, 1097
HpyCH4III ACNGT 2 cut(s) 293, 967
HpyCH4IV ACGT 1 cut(s) 727
HpyCH4V TGCA 8 cut(s) 379, 548, 648, 672, 758, 947, 1148, 1205
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 678
HpyF3I CTNAG 3 cut(s) 213, 483, 573
HpySE526I ACGT 1 cut(s) 727
Hsp92I GRCGYC 2 cut(s) 266, 932
Hsp92II CATG 1 cut(s) 904
HspAI GCGC 1 cut(s) 1021
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 538, 804, 1111
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 3 cut(s) 271, 310, 816
Lsp1109I GCAGC 3 cut(s) 611, 660, 983
LweI GCATC 2 cut(s) 60, 1177
MabI ACCWGGT 1 cut(s) 774
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 727
MaeIII GTNAC 7 cut(s) 55, 592, 728, 928, 961, 1093, 1155
MalI GATC 9 cut(s) 95, 102, 186, 192, 198, 366, 540, 806, 1113
MboI GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 538, 804, 1111
MboII GAAGA 6 cut(s) 31, 244, 352, 545, 580, 773
MflI RGATCY 2 cut(s) 364, 538
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 1 cut(s) 972
MlyI GAGTC 3 cut(s) 169, 488, 547
MmeI TCCRAC 3 cut(s) 458, 494, 530
MnlI CCTC 9 cut(s) 114, 177, 268, 529, 974, 1002, 1005, 1022, 1157
MroXI GAANNNNTTC 1 cut(s) 751
MseI TTAA 1 cut(s) 675
MspI CCGG 8 cut(s) 137, 152, 269, 302, 308, 330, 530, 1067
MspR9I CCNGG 6 cut(s) 138, 519, 769, 776, 1001, 1161
Mva1269I GAATGC 1 cut(s) 866
MvaI CCWGG 5 cut(s) 519, 769, 776, 1001, 1161
MwoI GCNNNNNNNGC 2 cut(s) 79, 678
NciI CCSGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 816
NdeII GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 538, 804, 1111
NlaIII CATG 1 cut(s) 904
NlaIV GGNNCC 6 cut(s) 273, 306, 366, 540, 773, 873
NmuCI GTSAC 5 cut(s) 55, 592, 728, 928, 1155
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PctI GAATGC 1 cut(s) 866
PdmI GAANNNNTTC 1 cut(s) 751
PfeI GAWTC 6 cut(s) 146, 430, 466, 502, 692, 1070
PflMI CCANNNNNTGG 2 cut(s) 518, 941
PinAI ACCGGT 1 cut(s) 329
PkrI GCNGC 3 cut(s) 626, 650, 998
PleI GAGTC 3 cut(s) 168, 487, 547
PpsI GAGTC 3 cut(s) 168, 487, 547
Ppu21I YACGTR 1 cut(s) 728
PpuMI RGGWCCY 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 5 cut(s) 517, 767, 774, 999, 1159
PspGI CCWGG 5 cut(s) 517, 767, 774, 999, 1159
PspN4I GGNNCC 6 cut(s) 273, 306, 366, 540, 773, 873
PspPI GGNCC 4 cut(s) 314, 715, 772, 871
PspPPI RGGWCCY 1 cut(s) 772
PstI CTGCAG 1 cut(s) 760
PstNI CAGNNNCTG 4 cut(s) 410, 446, 518, 1085
PsuI RGATCY 2 cut(s) 364, 538
RsaI GTAC 3 cut(s) 295, 726, 840
RsaNI GTAC 3 cut(s) 294, 725, 839
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 3 cut(s) 625, 649, 997
Sau3AI GATC 9 cut(s) 93, 100, 184, 190, 196, 364, 538, 804, 1111
Sau96I GGNCC 4 cut(s) 314, 715, 772, 871
ScaI AGTACT 2 cut(s) 295, 840
SchI GAGTC 3 cut(s) 169, 488, 547
ScrFI CCNGG 6 cut(s) 138, 519, 769, 776, 1001, 1161
SduI GDGCHC 1 cut(s) 248
SexAI ACCWGGT 1 cut(s) 774
SfaNI GCATC 2 cut(s) 60, 1177
SfcI CTRYAG 1 cut(s) 756
SinI GGWCC 4 cut(s) 314, 715, 772, 871
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 1 cut(s) 972
SsiI CCGC 2 cut(s) 23, 170
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 6 cut(s) 136, 517, 767, 774, 999, 1159
TaaI ACNGT 2 cut(s) 293, 967
TaiI ACGT 1 cut(s) 730
TaqI TCGA 1 cut(s) 68
TasI AATT 1 cut(s) 972
TatI WGTACW 2 cut(s) 293, 838
TfiI GAWTC 6 cut(s) 146, 430, 466, 502, 692, 1070
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 4 cut(s) 103, 972, 1030, 1155
TseFI GTSAC 5 cut(s) 55, 592, 728, 928, 1155
TseI GCWGC 3 cut(s) 624, 648, 996
Tsp45I GTSAC 5 cut(s) 55, 592, 728, 928, 1155
TspDTI ATGAA 2 cut(s) 31, 889
TspGWI ACGGA 2 cut(s) 671, 759
TspRI CASTG 4 cut(s) 103, 972, 1030, 1155
Van91I CCANNNNNTGG 2 cut(s) 518, 941
VpaK11BI GGWCC 4 cut(s) 314, 715, 772, 871
XmnI GAANNNNTTC 1 cut(s) 751
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 2 cut(s) 295, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.